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Status
Public on Mar 08, 2006
Title
brain, Right Temporal Lobe: Extract81_le1
Sample type
RNA
Source name
brain, Right Temporal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Temporal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326674 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1719.4392
P
0.003595
AFFX-BioB-M_at
2657.4153
P
0.000340
AFFX-BioB-3_at
1377.3444
P
0.005565
AFFX-BioC-5_at
5176.5664
P
0.000169
AFFX-BioC-3_at
3631.7715
P
0.000081
AFFX-BioDn-5_at
3178.549
P
0.000081
AFFX-BioDn-3_at
24474.287
P
0.000127
AFFX-CreX-5_at
35103.027
P
0.000044
AFFX-CreX-3_at
53278.754
P
0.000044
AFFX-DapX-5_at
116.916405
A
0.275146
AFFX-DapX-M_at
288.13797
A
0.123572
AFFX-DapX-3_at
39.09121
A
0.852061
AFFX-LysX-5_at
14.656881
A
0.843268
AFFX-LysX-M_at
121.88017
A
0.455413
AFFX-LysX-3_at
45.489613
A
0.737173
AFFX-PheX-5_at
19.375881
A
0.910522
AFFX-PheX-M_at
34.870655
A
0.860518
AFFX-PheX-3_at
381.63712
A
0.455413
AFFX-ThrX-5_at
56.04682
A
0.645547
AFFX-ThrX-M_at
113.24797
A
0.425962
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99478.CEL.gz
3.5 Mb
(ftp) (http) CEL
