GEO help: Mouse over screen elements for information.
Status
Public on Mar 08, 2006
Title
brain, Right Temporal Parietal: Extract83_le2
Sample type
RNA
Source name
brain, Right Temporal Parietal
Organism
Homo sapiens Characteristics
tissue: brain, Right Temporal Parietal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
5426.7837
P
0.036569
AFFX-BioB-M_at
7881.4043
P
0.000754
AFFX-BioB-3_at
2781.305
P
0.030976
AFFX-BioC-5_at
11049.265
P
0.000258
AFFX-BioC-3_at
9585.69
P
0.000297
AFFX-BioDn-5_at
7421.23
P
0.000662
AFFX-BioDn-3_at
74017.99
P
0.000225
AFFX-CreX-5_at
99074.26
P
0.000044
AFFX-CreX-3_at
181273.98
P
0.000044
AFFX-DapX-5_at
252.49368
A
0.603080
AFFX-DapX-M_at
630.275
A
0.411380
AFFX-DapX-3_at
91.07172
A
0.973889
AFFX-LysX-5_at
911.75555
A
0.108979
AFFX-LysX-M_at
557.03546
A
0.617401
AFFX-LysX-3_at
386.03644
A
0.485110
AFFX-PheX-5_at
123.18788
A
0.783476
AFFX-PheX-M_at
104.61031
A
0.957038
AFFX-PheX-3_at
930.11096
A
0.544587
AFFX-ThrX-5_at
197.02081
A
0.686277
AFFX-ThrX-M_at
336.1046
A
0.631562
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99483.CEL.gz
3.3 Mb
(ftp) (http) CEL
