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Sample GSM99542

Query DataSets for GSM99542

Status

Public on Mar 08, 2006

Title

brain, Left frontal Lobe: Extract27_le1

Sample type

RNA

Source name

brain, Left frontal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Left frontal Lobe
histology: GBM
tumor number (as appears in figure 3): 1406
age: 29
gender: MALE
grade: 4
living: DECEASED
survival time: 236
survival cluster: SC2
hc_85_samples: HC2B
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

[email protected]

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1734.3774	P	0.001248
AFFX-BioB-M_at	4571.004	P	0.000509
AFFX-BioB-3_at	1819.4911	P	0.004017
AFFX-BioC-5_at	5879.6777	P	0.000070
AFFX-BioC-3_at	4203.7773	P	0.000060
AFFX-BioDn-5_at	5330.754	P	0.000060
AFFX-BioDn-3_at	31874.312	P	0.000060
AFFX-CreX-5_at	50659.65	P	0.000044
AFFX-CreX-3_at	81646.32	P	0.000044
AFFX-DapX-5_at	118.56705	A	0.368438
AFFX-DapX-M_at	230.35478	A	0.603080
AFFX-DapX-3_at	20.824091	A	0.966323
AFFX-LysX-5_at	182.49345	A	0.382599
AFFX-LysX-M_at	296.23795	A	0.396920
AFFX-LysX-3_at	118.30123	A	0.559354
AFFX-PheX-5_at	19.935684	A	0.868639
AFFX-PheX-M_at	46.98953	A	0.860538
AFFX-PheX-3_at	318.59885	A	0.588620
AFFX-ThrX-5_at	52.891735	A	0.804734
AFFX-ThrX-M_at	82.45839	A	0.659339

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99542.CEL.gz	3.4 Mb	(ftp)(http)	CEL