GEO help: Mouse over screen elements for information.
Status
Public on Mar 08, 2006
Title
brain, Right Cerebellum: Extract53_le2
Sample type
RNA
Source name
brain, Right Cerebellum
Organism
Homo sapiens Characteristics
tissue: brain, Right Cerebellum
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4200.6807
P
0.006187
AFFX-BioB-M_at
8438.067
P
0.000225
AFFX-BioB-3_at
3499.5806
P
0.004484
AFFX-BioC-5_at
10054.14
P
0.000169
AFFX-BioC-3_at
8652.745
P
0.000258
AFFX-BioDn-5_at
8080.9087
P
0.000169
AFFX-BioDn-3_at
58201.555
P
0.000169
AFFX-CreX-5_at
104700.336
P
0.000044
AFFX-CreX-3_at
161957.02
P
0.000044
AFFX-DapX-5_at
418.58243
A
0.287743
AFFX-DapX-M_at
704.16144
A
0.275146
AFFX-DapX-3_at
404.08734
A
0.804734
AFFX-LysX-5_at
172.38959
A
0.455413
AFFX-LysX-M_at
130.85553
A
0.712257
AFFX-LysX-3_at
384.7831
A
0.440646
AFFX-PheX-5_at
26.818249
A
0.910522
AFFX-PheX-M_at
89.45023
A
0.916408
AFFX-PheX-3_at
545.45996
A
0.425962
AFFX-ThrX-5_at
80.69095
A
0.921998
AFFX-ThrX-M_at
92.3382
A
0.699394
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99593.CEL.gz
3.3 Mb
(ftp) (http) CEL
