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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract57_le2
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3629.113
P
0.003595
AFFX-BioB-M_at
8689.163
P
0.000195
AFFX-BioB-3_at
3520.2932
P
0.001796
AFFX-BioC-5_at
10232.022
P
0.000147
AFFX-BioC-3_at
7267.283
P
0.000169
AFFX-BioDn-5_at
8171.219
P
0.000044
AFFX-BioDn-3_at
59286.633
P
0.000127
AFFX-CreX-5_at
67020.305
P
0.000044
AFFX-CreX-3_at
131527.5
P
0.000052
AFFX-DapX-5_at
66.08096
A
0.814869
AFFX-DapX-M_at
316.5584
A
0.425962
AFFX-DapX-3_at
72.951584
A
0.976071
AFFX-LysX-5_at
354.0168
A
0.368438
AFFX-LysX-M_at
371.24744
A
0.559354
AFFX-LysX-3_at
409.1634
A
0.216524
AFFX-PheX-5_at
53.965008
A
0.834139
AFFX-PheX-M_at
51.549717
A
0.966323
AFFX-PheX-3_at
148.26064
A
0.794268
AFFX-ThrX-5_at
59.129444
A
0.910522
AFFX-ThrX-M_at
63.79412
A
0.737173
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99601.CEL.gz
3.2 Mb
(ftp) (http) CEL
