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Sample GSM999435

Query DataSets for GSM999435

Status

Public on Sep 07, 2012

Title

HudsonAlpha_MethylArray_HRCEpiC_Methyl27

Sample type

genomic

Source name

HRCEpiC

Organism

Homo sapiens

Characteristics

lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: MethylArray
datatype description: DNA Methylation Array
cell: HRCEpiC
cell organism: human
cell description: renal cortical epithelial cells
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
treatment: None
treatment description: No special treatment or protocol applies
labversion: Methyl27
obtainedby: UW
obtainedby description: Stamatoyannopoulous - University of Washington
replicate: 2

Biomaterial provider

Lonza

Treatment protocol

None

Extracted molecule

genomic DNA

Extraction protocol

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Label

Cy3 or Cy5

Label protocol

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Hybridization protocol

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Scan protocol

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Description

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Data processing

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Score in the bed files is beta value x 1000

Submission date

Sep 07, 2012

Last update date

Apr 23, 2013

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL8490

Series (1)

GSE40700

CpG Methylation by Illumina Methyl27 Bead Arrays from ENCODE/HAIB

Supplementary file	Size	Download	File type/resource
GSM999435_hg19_wgEncodeHaibMethylArrayHrceUwSitesRep2.bed.gz	490.5 Kb	(ftp)(http)	BED
Processed data provided as supplementary file