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Sample GSM999446 Query DataSets for GSM999446
Status Public on Sep 07, 2012
Title HudsonAlpha_MethylArray_NB4_Methyl27
Sample type genomic
 
Source name NB4
Organism Homo sapiens
Characteristics lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: MethylArray
datatype description: DNA Methylation Array
cell: NB4
cell organism: human
cell description: acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: U
treatment: None
treatment description: No special treatment or protocol applies
labversion: Methyl27
obtainedby: UW
obtainedby description: Stamatoyannopoulous - University of Washington
replicate: 2
Biomaterial provider Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/
Treatment protocol None
Growth protocol NB4_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Label Cy3 or Cy5
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Score in the bed files is beta value x 1000
 
Submission date Sep 07, 2012
Last update date Apr 23, 2013
Contact name ENCODE DCC
E-mail(s) [email protected]
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL8490
Series (1)
GSE40700 CpG Methylation by Illumina Methyl27 Bead Arrays from ENCODE/HAIB

Supplementary file Size Download File type/resource
GSM999446_hg19_wgEncodeHaibMethylArrayNb4UwSitesRep2.bed.gz 490.5 Kb (ftp)(http) BED
Processed data provided as supplementary file
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