GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM999449
Query DataSets for GSM999449
Status
Public on Sep 07, 2012
Title
HudsonAlpha_MethylArray_BC_Skin_01-11002_Methyl27
Sample type
genomic
Source name
BC_Skin_01-11002
Organism
Homo sapiens
Characteristics
lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: MethylArray
datatype description: DNA Methylation Array
cell: BC_Skin_01-11002
cell organism: human
cell description: skin, donor 01-11002, age 83, caucasian, DNA extract
cell karyotype: normal
cell lineage: ectoderm, mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labversion: Methyl27
obtainedby: BioChain
obtainedby description: The BioChain subset of HudsonAlpha
replicate: 1
Biomaterial provider
BioChain
Treatment protocol
None
Growth protocol
Myers_BioChain_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Label
Cy3 or Cy5
Label protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Hybridization protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Scan protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Description
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Score in the bed files is beta value x 1000
Submission date
Sep 07, 2012
Last update date
Apr 23, 2013
Contact name
ENCODE DCC
E-mail(s)
[email protected]
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL8490
Series (1)
GSE40700
CpG Methylation by Illumina Methyl27 Bead Arrays from ENCODE/HAIB
Supplementary file
Size
Download
File type/resource
GSM999449_hg19_wgEncodeHaibMethylArrayBcskin0111002BiochainSitesRep1.bed.gz
491.6 Kb
(ftp)
(http)
BED
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
