GTR Test Accession:
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GTR000603550.1
NYS CLEP
Registered in GTR:
2022-11-18
View version history
GTR000603550.1,
registered in GTR:
2022-11-18
Last annual review date for the lab: 2024-12-18
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At a Glance
Test purpose:
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Diagnosis;
Mutation Confirmation;
Pre-symptomatic; ...
Conditions (1):
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Hereditary breast ovarian cancer syndrome
Genes (2):
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BRCA1 (17q21.31);
BRCA2 (13q13.1)
Methods (1):
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Molecular Genetics - Sequence analysis of select exons: Bi-directional Sanger Sequence Analysis
Target population: Help
Not provided
Clinical validity:
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Not provided
Clinical utility:
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Not provided
Ordering Information
Offered by:
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Specimen Source:
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- Fibroblasts
- Peripheral (whole) blood
- Saliva
Who can order: Help
- Genetic Counselor
- Health Care Provider
- Licensed Physician
- Nurse Practitioner
- Physician Assistant
- Registered Nurse
Contact Policy:
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Post-test email/phone consultation regarding genetic test results and interpretation is provided to patients/families.
Pre-test email/phone consultation regarding genetic test results and interpretation is provided to patients/families.
Pre-test email/phone consultation regarding genetic test results and interpretation is provided to patients/families.
How to Order:
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Licensure is state dependant. All healthcare providers who are licenced to order genetic testing in their state may order this testing.
Order URL
Order URL
Test service:
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Clinical Testing/Confirmation of Mutations Identified Previously
Confirmation of research findings
Confirmation of research findings
Test development:
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Test developed by laboratory (no manufacturer test name)
Informed consent required:
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Decline to answer
Pre-test genetic counseling required:
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Decline to answer
Post-test genetic counseling required:
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Decline to answer
Recommended fields not provided:
Test Order Code,
Lab contact for this test,
Test strategy
Conditions
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Total conditions: 1
Condition/Phenotype | Identifier |
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Test Targets
Genes
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Total genes: 2
Gene | Associated Condition | Germline or Somatic | Allele (Lab-provided) | Variant in NCBI |
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Methodology
Total methods: 1
Method Category
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Test method
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Instrument *
Sequence analysis of select exons
Bi-directional Sanger Sequence Analysis
* Instrument: Not provided
Clinical Information
Test purpose:
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Diagnosis;
Mutation Confirmation;
Pre-symptomatic;
Risk Assessment
Variant Interpretation:
What is the protocol for interpreting a variation as a VUS?
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Classifications are determined by committee decision.
Classifications are determined by committee decision.
Are family members with defined clinical status recruited to assess significance of VUS without charge?
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Yes.
Yes.
Will the lab re-contact the ordering physician if variant interpretation changes?
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Yes. Amended reports are sent to ordering/recieving provider at the time of reclassification.
Yes. Amended reports are sent to ordering/recieving provider at the time of reclassification.
Recommended fields not provided:
Clinical validity,
Clinical utility,
Target population,
Is research allowed on the sample after clinical testing is complete?,
Sample negative report,
Sample positive report
Technical Information
Test Procedure:
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All potential clinically significant variants are independently confirmed by repeated PCR amplification of the indicated gene region(s) and sequencing or deletion/duplication testing, depending on the mutation.
Test Confirmation:
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All potential clinically significant variants are independently confirmed by repeated PCR amplification of the indicated gene region(s) and sequencing or deletion/duplication testing, depending on the mutation.
Test Comments:
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Previousy registered in GTR as GTR000503369
Availability:
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Tests performed
Entire test performed in-house
Entire test performed in-house
Analytical Validity:
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Analytical specificity: The incidence of a false report of a genetic variant or mutation resulting from technical error is considered negligible because of independent confirmation of all genetic variants. The incidence of a false report of a genetic variant or mutation resulting from errors in specimen handling and tracking is …
View more
View citations (2)
- https://new.myriadpro.com/documents-and-forms/technical-specifications/
- https://new.myriadpro.com/documents-and-forms/technical-specifications/
Assay limitations:
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Limitations of method: There may be limited portions of either BRCA1 or BRCA2 for which sequence determination can be performed only in the forward or reverse direction. Unequal allele amplification may result from rare polymorphisms under primer sites. Comprehensive BRACAnalysis includes testing for only the five specific large genomic rearrangements …
View more
View citations (2)
- https://new.myriadpro.com/documents-and-forms/technical-specifications/
- https://new.myriadpro.com/documents-and-forms/technical-specifications/
Proficiency testing (PT):
Is proficiency testing performed for this test?
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Yes
Method used for proficiency testing: Help
Formal PT program
PT Provider: Help
College of American Pathologists
Description of internal test validation method: Help
Blinded internal proficiency testing
Yes
Method used for proficiency testing: Help
Formal PT program
PT Provider: Help
College of American Pathologists
Description of internal test validation method: Help
Blinded internal proficiency testing
VUS:
Software used to interpret novel variations
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In house developed analytical tools.
Laboratory's policy on reporting novel variations Help
All non-polymophism variations are reported.
In house developed analytical tools.
Laboratory's policy on reporting novel variations Help
All non-polymophism variations are reported.
Recommended fields not provided:
Citations to support internal test validation method,
Description of PT method,
Major CAP category, CAP category, CAP test list
Regulatory Approval
FDA Review:
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Category:
FDA exercises enforcement discretion
NYS CLEP Approval:
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Number:
5414
Status: Approved
Status: Approved
Additional Information
Suggested reading:
Clinical resources:
Molecular resources:
Practice guidelines:
Consumer resources:
IMPORTANT NOTE:
NIH does not independently verify information submitted to GTR; it relies on submitters to provide information that is accurate and not misleading.
NIH makes no endorsements of tests or laboratories listed in GTR. GTR is not a substitute for medical advice.
Patients and consumers
with specific questions about a genetic test should contact a health care provider or a genetics professional.