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GenBank: KYK21846.1
Identical Proteins FASTA Graphics
LOCUS KYK21846 333 aa linear ENV 22-MAR-2016 DEFINITION MAG: hypothetical protein AYK24_08635 [Thermoplasmatales archaeon SG8-52-4]. ACCESSION KYK21846 VERSION KYK21846.1 DBLINK BioProject: PRJNA270657 BioSample: SAMN04495913 DBSOURCE accession LSSF01000052.1 KEYWORDS ENV; Metagenome Assembled Genome; MAG. SOURCE Thermoplasmatales archaeon SG8-52-4 (sediment metagenome) ORGANISM Thermoplasmatales archaeon SG8-52-4 Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata; Thermoplasmatales. REFERENCE 1 (residues 1 to 333) AUTHORS Baker,B.J., Lazar,C.S., Teske,A.P. and Dick,G.J. TITLE Direct Submission JOURNAL Submitted (18-FEB-2016) Marine Science, University of Texas at Austin, 750 Channel View, Port Aransas, TX 78373, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 2014 Assembly Method :: IDBA v. UD Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 120.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 02/18/2016 17:17:53 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.1 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,162 CDS (total) :: 2,119 Genes (coding) :: 2,036 CDS (coding) :: 2,036 Genes (RNA) :: 43 rRNAs :: 1 (16S) partial rRNAs :: 1 (16S) tRNAs :: 38 ncRNAs :: 4 Pseudo Genes (total) :: 83 Pseudo Genes (ambiguous residues) :: 0 of 83 Pseudo Genes (frameshifted) :: 2 of 83 Pseudo Genes (incomplete) :: 79 of 83 Pseudo Genes (internal stop) :: 2 of 83 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..333 /organism="Thermoplasmatales archaeon SG8-52-4" /isolate="SG8-52-4" /isolation_source="Sulfate-rich zone estuary sediments 8-12 cm" /db_xref="taxon:1803819" /environmental_sample /geo_loc_name="USA: White Oak River Estuary North Carolina" /lat_lon="34.7414 N 77.1234 W" /collection_date="Oct-2010" /metagenome_source="sediment metagenome" /note="metagenomic" Protein 1..333 /product="hypothetical protein" Region 2..>201 /region_name="UbiA" /note="4-hydroxybenzoate polyprenyltransferase [Coenzyme transport and metabolism]; COG0382" /db_xref="CDD:440151" CDS 1..333 /locus_tag="AYK24_08635" /coded_by="LSSF01000052.1:2816..3817" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /transl_table=11 ORIGIN 1 mklylklirp ygmlfigftp ffgaiangey rllpltilvi igmlahiftf vqndyydtei 61 dkkskyvsnr plvtdgisik taiviflssf ifsiilnmif lfsiysflml lfsflcmtly 121 nkyskrffgm eyvlaigvfs ygifgtltvs nsisnlaiii ssigfmhwlf svgvsanlkd 181 vefdtklgir ttpavfgvya kdkrlvipis fqiyayfiki ihifiatlpf ifgytsilvy 241 dfpipgicfl lialpllflt qkilytplsk rdnmliyigl qeglalllvp ialisilids 301 isllltflli lllifwplfw frtlfgkkmi ple //
Whole sequence Selected region from: to:
Conserved Domains
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