LOCUS NP_179664 299 aa linear PLN 20-OCT-2022
DEFINITION Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis
thaliana].
ACCESSION NP_179664
VERSION NP_179664.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_127636.3
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 299)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 299)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 299)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 299)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEC07061.
On May 13, 2003 this sequence version replaced NP_179664.1.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..299
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..299
/product="Pentatricopeptide repeat (PPR) superfamily
protein"
/calculated_mol_wt=34356
Region 104..131
/region_name="PPR repeat"
/note="PPR repeat [structural motif]"
/db_xref="CDD:276811"
Region 137..162
/region_name="PPR repeat"
/note="PPR repeat [structural motif]"
/db_xref="CDD:276811"
CDS 1..299
/locus_tag="AT2G20720"
/gene_synonym="F5H14.31; F5H14_31"
/coded_by="NM_127636.3:1135..2034"
/inference="Similar to RNA sequence,
EST:INSD:AI996845.1,INSD:ES047432.1,INSD:ES144649.1,
INSD:AV817496.1,INSD:EH924242.1,INSD:AV831705.1,
INSD:EL196602.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY140043.1,INSD:BT006328.1"
/note="Pentatricopeptide repeat (PPR) superfamily protein;
BEST Arabidopsis thaliana protein match is:
Tetratricopeptide repeat (TPR)-like superfamily protein
(TAIR:AT2G20710.1); Has 205 Blast hits to 205 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 204; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink)."
/db_xref="Araport:AT2G20720"
/db_xref="GeneID:816600"
/db_xref="TAIR:AT2G20720"
ORIGIN
1 mlclyhqaed hdmvvkllge mdekkmqpqg lcfvklltsy smasvvdvqg vekflskwev
61 miqdkwttfy fpglvyirag fmekglallr rsetfvddgc reiiygclmt vycnenlted
121 vyrlwnlakd ygisfdssrc sdivkaftkk gdldgvmeew necpnldlmd fglqhrcvke
181 eaekvvdmlg kkeskwesla hkvntlvede dakeeerrkr vaeamegrlh drwnpknsma
241 lsafacvqyv egrrdmesta dilrllnkre qvshamdknr lslkmveamr gggyvggdd
//