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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_179664.2

Identical Proteins FASTA Graphics 

LOCUS       NP_179664                299 aa            linear   PLN 20-OCT-2022
DEFINITION  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis
            thaliana].
ACCESSION   NP_179664
VERSION     NP_179664.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_127636.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 299)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 299)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 299)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 299)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEC07061.
            
            On May 13, 2003 this sequence version replaced NP_179664.1.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..299
                     /product="Pentatricopeptide repeat (PPR) superfamily
                     protein"
                     /calculated_mol_wt=34356
     Region          104..131
                     /region_name="PPR repeat"
                     /note="PPR repeat [structural motif]"
                     /db_xref="CDD:276811"
     Region          137..162
                     /region_name="PPR repeat"
                     /note="PPR repeat [structural motif]"
                     /db_xref="CDD:276811"
     CDS             1..299
                     /locus_tag="AT2G20720"
                     /gene_synonym="F5H14.31; F5H14_31"
                     /coded_by="NM_127636.3:1135..2034"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AI996845.1,INSD:ES047432.1,INSD:ES144649.1,
                     INSD:AV817496.1,INSD:EH924242.1,INSD:AV831705.1,
                     INSD:EL196602.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY140043.1,INSD:BT006328.1"
                     /note="Pentatricopeptide repeat (PPR) superfamily protein;
                     BEST Arabidopsis thaliana protein match is:
                     Tetratricopeptide repeat (TPR)-like superfamily protein
                     (TAIR:AT2G20710.1); Has 205 Blast hits to 205 proteins in
                     11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
                     0; Plants - 204; Viruses - 0; Other Eukaryotes - 1
                     (source: NCBI BLink)."
                     /db_xref="Araport:AT2G20720"
                     /db_xref="GeneID:816600"
                     /db_xref="TAIR:AT2G20720"
ORIGIN      
        1 mlclyhqaed hdmvvkllge mdekkmqpqg lcfvklltsy smasvvdvqg vekflskwev
       61 miqdkwttfy fpglvyirag fmekglallr rsetfvddgc reiiygclmt vycnenlted
      121 vyrlwnlakd ygisfdssrc sdivkaftkk gdldgvmeew necpnldlmd fglqhrcvke
      181 eaekvvdmlg kkeskwesla hkvntlvede dakeeerrkr vaeamegrlh drwnpknsma
      241 lsafacvqyv egrrdmesta dilrllnkre qvshamdknr lslkmveamr gggyvggdd
//
1..299
/locus_tag="AT2G20720"
/gene_synonym="F5H14.31; F5H14_31"
/coded_by="NM_127636.3:1135..2034"
/inference="Similar to RNA sequence,
EST:INSD:AI996845.1,INSD:ES047432.1,INSD:ES144649.1,
INSD:AV817496.1,INSD:EH924242.1,INSD:AV831705.1,
INSD:EL196602.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY140043.1,INSD:BT006328.1"
/note="Pentatricopeptide repeat (PPR) superfamily protein;
BEST Arabidopsis thaliana protein match is:
Tetratricopeptide repeat (TPR)-like superfamily protein
(TAIR:AT2G20710.1); Has 205 Blast hits to 205 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 204; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink)."
/db_xref="Araport:AT2G20720"
/db_xref="GeneID:816600"
/db_xref="TAIR:AT2G20720"
Feature NP_179664 : 1 segment
Display: FASTA GenBank Help
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Protein clusters for NP_179664.2

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT2G20720 gene (NM_127636.3).

More about the AT2G20720 gene

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