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Croceivirga radicis strain HSG9 contig19, whole genome shotgun sequence

NCBI Reference Sequence: NZ_MTBC01000019.1

FASTA Graphics 

LOCUS       NZ_MTBC01000019         2099 bp    DNA     linear   CON 23-OCT-2024
DEFINITION  Croceivirga radicis strain HSG9 contig19, whole genome shotgun
            sequence.
ACCESSION   NZ_MTBC01000019 NZ_MTBC01000000
VERSION     NZ_MTBC01000019.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06174226
            Assembly: GCF_002072105.2
KEYWORDS    WGS; RefSeq.
SOURCE      Croceivirga radicis
  ORGANISM  Croceivirga radicis
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Croceivirga.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Hu,D., Wang,L. and Shao,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2016) The Third Institute of Oceanography, Key
            Laboratory of Marine Biogenetic Resources, State of Oceanic
            Administration, Room 116, Daxue Road 178, Xiamen, Fujian 361005,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MTBC01000019.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.0
            Genome Coverage       :: 100
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002072105.2-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:15:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,140
            CDSs (total)                      :: 3,095
            Genes (coding)                    :: 3,077
            CDSs (with protein)               :: 3,077
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 1 of 18
            Pseudo Genes (incomplete)         :: 15 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Croceivirga radicis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig19"
                     /strain="HSG9"
                     /isolation_source="rot root of tropical mangrove"
                     /type_material="type strain of Croceivirga radicis"
                     /db_xref="taxon:1929488"
                     /geo_loc_name="China: Hainan Province"
                     /collection_date="2010-05"
     gene            24..1475
                     /locus_tag="BUL40_RS15625"
                     /old_locus_tag="BUL40_15665"
     CDS             24..1475
                     /locus_tag="BUL40_RS15625"
                     /old_locus_tag="BUL40_15665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010517024.1"
                     /GO_function="GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /GO_process="GO:0055085 - transmembrane transport
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="WP_080320000.1"
                     /translation="MKPDSNRISVKEKVGYALGDLSANLVFQTILTYLAYFYTDIYGL
                     KTGDASLVIFTVGTVAAFLFNPLIGALADRTHSKWGKFRPWILFTAVPLGVVALLAFT
                     TPDFSYKGKLIYASVTYTLLLLLYAANNLPYAALSGVITGSMQERNSISAYRFVAVMF
                     AQFFVQVFMLPIIQAAGGGDKAAGIETVMTYLAIIGTLMLLATFVATKERIVPKPEQR
                     SSFLQDIKDLSKNRPWVIMLLLTTLVFVTLAMKGGSYVYYFENFVDQPHLASFLAPIL
                     DALSAAGMDFFGDNAAAAGFGLFNAGGIIFMMVGIGFSKKLADRYGKRDVFALALFVS
                     TLFIIVFYFFGPKDVAYMFLAQVLHGFSYGVTIPLLWAMIADVADYSEWRNDRRATAI
                     IFSAMMIGLKLGLSIGGALVTYILGAHGYLAKVVGNTAAQQPQSALQGIKLLVSLYPA
                     VPFLLGIGLLFFYVINKDMENTIENDLKTRRKN"
     gene            1675..>2099
                     /locus_tag="BUL40_RS15630"
                     /old_locus_tag="BUL40_15670"
     CDS             1675..>2099
                     /locus_tag="BUL40_RS15630"
                     /old_locus_tag="BUL40_15670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549673.1"
                     /GO_function="GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /GO_process="GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="WP_317044027.1"
                     /translation="MEDYHVLSMDHVGAPAKDHGVALHVDDVPWAKQQMWAPDAAHKN
                     GTYYLFFPAKDHQGIFRIGVALSGSPTGPFTPRPNAIKGSFSIDPAVFEDTDGTHYMY
                     FGGLWGGQLQRWRNGSFDASSPESPTAHLPQDHEPALLP"
CONTIG      join(MTBC01000019.1:1..2099)
//
24..1475
/locus_tag="BUL40_RS15625"
/old_locus_tag="BUL40_15665"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010517024.1"
activity [Evidence IEA]"
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="MFS transporter"
/protein_id="WP_080320000.1"
/translation="MKPDSNRISVKEKVGYALGDLSANLVFQTILTYLAYFYTDIYGL
KTGDASLVIFTVGTVAAFLFNPLIGALADRTHSKWGKFRPWILFTAVPLGVVALLAFT
TPDFSYKGKLIYASVTYTLLLLLYAANNLPYAALSGVITGSMQERNSISAYRFVAVMF
AQFFVQVFMLPIIQAAGGGDKAAGIETVMTYLAIIGTLMLLATFVATKERIVPKPEQR
SSFLQDIKDLSKNRPWVIMLLLTTLVFVTLAMKGGSYVYYFENFVDQPHLASFLAPIL
DALSAAGMDFFGDNAAAAGFGLFNAGGIIFMMVGIGFSKKLADRYGKRDVFALALFVS
TLFIIVFYFFGPKDVAYMFLAQVLHGFSYGVTIPLLWAMIADVADYSEWRNDRRATAI
IFSAMMIGLKLGLSIGGALVTYILGAHGYLAKVVGNTAAQQPQSALQGIKLLVSLYPA
VPFLLGIGLLFFYVINKDMENTIENDLKTRRKN"
Warning: Cannot highlight feature because no sequence is shown. Show the sequence
Feature NZ_MTBC01000019 : 1 segment
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