U.S. flag

An official website of the United States government

type III secretion system invasion protein IagB [Enterobacter bugandensis]

GenBank: THE56798.1

Identical Proteins FASTA Graphics 

LOCUS       THE56798                 146 aa            linear   BCT 18-APR-2019
DEFINITION  type III secretion system invasion protein IagB [Enterobacter
            bugandensis].
ACCESSION   THE56798
VERSION     THE56798.1
DBLINK      BioProject: PRJNA497272
            BioSample: SAMN10252912
DBSOURCE    accession RDOI01000001.1
KEYWORDS    .
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (residues 1 to 146)
  AUTHORS   Matteoli,F.P.
  TITLE     E. bugandensis sequencing
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 146)
  AUTHORS   Matteoli,F.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2018) LQFPP, UENF, Avenida Alberto Lamego, Campos
            dos Goytacazes, Rio de Janeiro 28013600, Brazil
COMMENT     Bacteria and source DNA available from Fabio Olivares.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 16-OCT-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 360.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/19/2018 16:56:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,630
            CDS (total)                       :: 4,539
            Genes (coding)                    :: 4,447
            CDS (coding)                      :: 4,447
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 47 of 92
            Pseudo Genes (incomplete)         :: 36 of 92
            Pseudo Genes (internal stop)      :: 32 of 92
            Pseudo Genes (multiple problems)  :: 20 of 92
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..146
                     /organism="Enterobacter bugandensis"
                     /strain="UENF-21GII"
                     /isolation_source="Vermicompost"
                     /db_xref="taxon:881260"
                     /geo_loc_name="Brazil: Campos dos Goytacazes"
                     /lat_lon="21.46 S 41.18 W"
                     /collection_date="2014-04-10"
                     /collected_by="Nudiba-UENF"
     Protein         1..146
                     /product="type III secretion system invasion protein IagB"
     Region          1..146
                     /region_name="Lyz-like"
                     /note="lysozyme-like domains; cl00222"
                     /db_xref="CDD:469668"
     Site            order(41,63..65,68,96,114..115)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:381603"
     CDS             1..146
                     /gene="iagB"
                     /locus_tag="EAI35_03025"
                     /coded_by="RDOI01000001.1:621735..622175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006809423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mkkfilllli ishgalancw nnaahyyhvd pyllyaianv esgmnpyavg qnhdgtrdvg
       61 lmqinsshft elerkgidey rlmaepctsi mvgasilsnm ikvygynwea vgaynaglkr
      121 enypqrmmya hkvwkkyqel klaary
//
1..146
/gene="iagB"
/locus_tag="EAI35_03025"
/coded_by="RDOI01000001.1:621735..622175"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006809423.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
Feature THE56798 : 1 segment
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

  • RefSeq protein
    See the reference protein sequence for MULTISPECIES: type III secretion system invasion protein IagB (WP_048959679.1).

More about the gene iagB

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.