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DUF1190 family protein [Enterobacter roggenkampii]

GenBank: TWY22862.1

Identical Proteins FASTA Graphics 

LOCUS       TWY22862                 221 aa            linear   BCT 10-AUG-2019
DEFINITION  DUF1190 family protein [Enterobacter roggenkampii].
ACCESSION   TWY22862
VERSION     TWY22862.1
DBLINK      BioProject: PRJNA558366
            BioSample: SAMN12438177
DBSOURCE    accession VOMK01000008.1
KEYWORDS    .
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (residues 1 to 221)
  AUTHORS   Jeong,K.C.
  TITLE     Enterobacter cloacae from clinical samples
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 221)
  AUTHORS   Jeong,K.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2019) Animal Sciences at the Emerging Pathogens
            Institute, University of Florida, 2055 Mowry Rd, Gainesville, FL
            32611, USA
COMMENT     Bacteria and source DNA available from Emerging Pathogens
            Institute.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/05/2019 18:12:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,078
            CDSs (total)                      :: 4,971
            Genes (coding)                    :: 4,796
            CDSs (with protein)               :: 4,796
            Genes (RNA)                       :: 107
            rRNAs                             :: 9, 8, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 2, 8, 6 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 66 of 175
            Pseudo Genes (incomplete)         :: 102 of 175
            Pseudo Genes (internal stop)      :: 32 of 175
            Pseudo Genes (multiple problems)  :: 22 of 175
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Enterobacter roggenkampii"
                     /strain="KCJ3K345"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="USA"
                     /lat_lon="29.6436 N 82.3549 W"
                     /collection_date="Mar-2018"
                     /collected_by="Emerging Pathogens Institute"
     Protein         1..221
                     /product="DUF1190 family protein"
     Region          1..221
                     /region_name="PRK11653"
                     /note="DUF1190 family protein"
                     /db_xref="CDD:236948"
     CDS             1..221
                     /locus_tag="FR969_05440"
                     /coded_by="VOMK01000008.1:97412..98077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_457579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mkrtktinha sfrkswnarh ltpvalavta vfmlagcekn detvslyqna ddcsaatgka
       61 aecktaytna lkeaertapk yasredcvae fgegqcqqap aqagtapenq aqaqssgsfw
      121 mplmagymmg rlmgggagyq qqplfssknp aspaygqytd asgkgygaat pgrtvtvpkt
      181 amapkpatts titrggfges vakqtsmqrs asgtstrsmg g
//
1..221
/locus_tag="FR969_05440"
/coded_by="VOMK01000008.1:97412..98077"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_457579.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
Feature TWY22862 : 1 segment
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for MULTISPECIES: DUF1190 family protein (WP_008502972.1).

More about the gene BFV67_RS18675

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