PMC Links for GEO Profiles (Select 27546635) - PMC

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Items: 13

Select item 114078991.

Ythdf m⁶A Readers Function Redundantly during Zebrafish Development

Cassandra Kontur, Minsun Jeong, Daniel Cifuentes, Antonio J. Giraldez

Cell Rep. Author manuscript; available in PMC 2024 Sep 17.

Published in final edited form as: Cell Rep. 2020 Dec 29; 33(13): 108598. doi: 10.1016/j.celrep.2020.108598

PMCID:: PMC11407899

Abstract Article PDF–2.6M

Select item 109546572.

METTL3-dependent m⁶A modification of PSEN1 mRNA regulates craniofacial development through the Wnt/β-catenin signaling pathway

Lan Ma, Xi Zhou, Siyue Yao, Xinyu Zhang, Ji Mao, Barbara Vona, Liwen Fan, Shu Lou, Dandan Li, Lin Wang, Yongchu Pan

Cell Death Dis. 2024 Mar; 15(3): 229. Published online 2024 Mar 20. doi: 10.1038/s41419-024-06606-9

PMCID:: PMC10954657

Abstract Article PDF–6.6M

Select item 100501183.

Nuclear Receptor Nr5a2 Promotes Diverse Connective Tissue Fates in the Jaw

Hung-Jhen Chen, Lindsey Barske, Jared C. Talbot, Olivia M. Dinwoodie, Ryan R. Roberts, D’Juan T. Farmer, Christian Jimenez, Amy E. Merrill, Abigail S. Tucker, J. Gage Crump

Dev Cell. Author manuscript; available in PMC 2024 Mar 27.

Published in final edited form as: Dev Cell. 2023 Mar 27; 58(6): 461–473.e7. Published online 2023 Mar 10. doi: 10.1016/j.devcel.2023.02.011

PMCID:: PMC10050118

Abstract Article PDF–3.1M

Select item 83831154.

A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos

Shimon M. Rosenthal, Tvisha Misra, Hala Abdouni, Tess C. Branon, Alice Y. Ting, Ian C. Scott, Anne-Claude Gingras

Mol Cell Proteomics. 2021; 20: 100128. Published online 2021 Jul 29. doi: 10.1016/j.mcpro.2021.100128

PMCID:: PMC8383115

Abstract Article PDF–2.4M

Select item 66332595.

Genome wide analysis of 3′ UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish

Charles E. Vejnar, Mario Abdel Messih, Carter M. Takacs, Valeria Yartseva, Panos Oikonomou, Romain Christiano, Marlon Stoeckius, Stephanie Lau, Miler T. Lee, Jean-Denis Beaudoin, Damir Musaev, Hiba Darwich-Codore, Tobias C. Walther, Saeed Tavazoie, Daniel Cifuentes, Antonio J. Giraldez

Genome Res. 2019 Jul; 29(7): 1100–1114. doi: 10.1101/gr.245159.118

PMCID:: PMC6633259

Abstract Article PDF–3.9M

Select item 54950706.

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

Vladimir Despic, Mario Dejung, Mengting Gu, Jayanth Krishnan, Jing Zhang, Lydia Herzel, Korinna Straube, Mark B. Gerstein, Falk Butter, Karla M. Neugebauer

Genome Res. 2017 Jul; 27(7): 1184–1194. doi: 10.1101/gr.215954.116

PMCID:: PMC5495070

Abstract Article PDF–521K

Select item 48707327.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 46341378.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 286554810.

Concomitant Duplications of Opioid Peptide and Receptor Genes before the Origin of Jawed Vertebrates

Görel Sundström, Susanne Dreborg, Dan Larhammar

PLoS One. 2010; 5(5): e10512. Published online 2010 May 6. doi: 10.1371/journal.pone.0010512

PMCID:: PMC2865548

Abstract Article PDF–2.9M

Select item 119954611.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305

PMCID:: PMC1199546

Abstract Article PDF–595K

Select item 52895912.

Hematopoietic gene expression profile in zebrafish kidney marrow

Huai-Dong Song, Xiao-Jian Sun, Min Deng, Guo-Wei Zhang, Yi Zhou, Xin-Yan Wu, Yan Sheng, Yi Chen, Zheng Ruan, Chun-Lei Jiang, Hui-Yong Fan, Leonard I. Zon, John P. Kanki, Ting Xi Liu, A. Thomas Look, Zhu Chen

Proc Natl Acad Sci U S A. 2004 Nov 16; 101(46): 16240–16245. Published online 2004 Nov 1. doi: 10.1073/pnas.0407241101