NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss167616284           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA07022_36_chr16_20838
RefSNP(rs#)rs2541678
Submitted Batch IDNA07022_snpassay_chr16
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss167616284|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 TATGGCCAGC AGACCTGGAT CCTTCTGTGG GGCCACAGGA GGCCCCCGCC TCCAAAAGGA
 AGCTGTTCCC TTGGTGGGAC CAGGAGCCTC CATCCCATGC ATCACACACA CAACACCCTC
 CATCACTGCA GTGCTCCCTG GAGACCAACC TATGGCACCA GATCCTCACC CGCGGGTCTA
 AATAACCCGT GGCAGGTGTC CTAGTTCTCT AGGGAACAGC TGGTGCCCGC AACAGGATGA
 CAGTCCAGGG
 R
 ACAGTCACAA TCTGACCTGC TCAGCCTTGT CGTCAGCTGC CCAGACTCCT GACAGTCACA
 TCTACCACCT TGGGGAAAGA GGGAGACTCT GCCAAGAGCC AGATGCCCGG TTCATGGTTC
 AAATTATATT TTTGGACAAA AATCTTGAAA ACTAGGCTCC TCATTGAGAG AGAAAAGGAT
 TTTTCTGCAT AGTAAGCTGG AGCCACAGTG TGAAGGGGAC AGGGAGGGAA GATTCTGGAG
 AAGAGTGGTC

  Submitted Frequency for ss167616284 back to top
There is no frequency submission for ss167616284.


  dbSNP summary of Genotypes for ss167616284 back to top
No sufficient data to compute Hardy-weinberg probability for ss167616284.


  Submitted individual genotype for ss167616284 back to top
There is no individual genotype data for ss167616284.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement