NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss162138746           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA07022_36_chr6_25957599
RefSNP(rs#)rs942379
Submitted Batch IDNA07022_snpassay_chr6
Submitted DateSep 28, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 28 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162138746|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 CTGTGTGGTT TCAGTTTCAA AGACAGCAAT CACTATTTAG TTCTTTGCTT GAGAATGAAC
 CAGGCTTTAG GTCACCAAAG AAATGATTCT ATATTTTTCT TTAGCAGGTT CATCTTAATG
 ACAAATTACC CAAAATTTAA CTTTATTTTT CAGTCTTTGA ATACATGCTA TCACCTTTAT
 AAGTGGATTT AGCAGAGCAT CTTTGGAGTC CTTCATGACA AAAAAATTGT ACCTGACTAA
 GAAGAAATCC
 R
 CTGACAGTGG GTACAATGAC AGGTGCTATG CTCGAAAATC CTCTTGATGC TCCCATGAGA
 AAACTGGAAT ACCTGTGGGT GACAGGAATG TTCCGGTCTA GATCCAGAGA TGTTTGACAG
 TATCCTTCAG CCCTGATCCA TGTATGAATC TATAACTCAA TTATATTTCA CAATTATATA
 TAATTATAAT TAGACAATTA TATCAAAAAG GACTTGCACT ATGTATATTC AATGAGAGGG
 ATGAGGACAA

  Submitted Frequency for ss162138746 back to top
There is no frequency submission for ss162138746.


  dbSNP summary of Genotypes for ss162138746 back to top
No sufficient data to compute Hardy-weinberg probability for ss162138746.


  Submitted individual genotype for ss162138746 back to top
There is no individual genotype data for ss162138746.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement