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Resources:
Retroviruses
Reference sets:
Retroviruses
Hepatitis B
Hepatitis C
Poliovirus
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Tools:
Genotyping
External links:
Division of AIDS at NIAID
LANL HIV Sequence Database
Stanford HIV RT and Protease Gene Database
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HIV-1 (2004) & CFRs, HIV-2, HTLV-1, HTLV-2, HIV-1 (2005), HIV-1 (2005) & CFRs, HIV-1 (2007), HIV-1 (2009)
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HIV-1 (2004) & CFRs:
| Accession |
GI |
Title |
Length |
|
| Subtype: A1 |
| M62320 |
328902 |
Human immunodeficiency virus type 1 Ugandan isolate U455, complete proviral genome. |
9178 |
| U51190 |
2570232 |
HIV-1 clone 92ug037 from Uganda, complete genome |
8999 |
| AF004885 |
2745742 |
HIV-1 isolate Q23-17 from Kenya, complete genome |
9160 |
| AF069670 |
3808250 |
HIV-1 isolate SE7253 from Somalia, gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, com |
8813 |
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| Subtype: A2 |
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| Subtype: B |
| M17451 |
328565 |
Human immunodeficiency virus type 1, isolate RF (HAT-3), complete genome. |
9128 |
| U63632 |
1465777 |
HIV-1 isolate JRFL (USA) gag, pol, vif, vpr, tat, rev and env genes, complete cds. |
8896 |
| U21135 |
1772624 |
Human immunodeficiency virus type 1 clone WEAU 1.60, complete genome. |
9720 |
| K03455 |
1906382 |
Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome. |
9719 |
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| Subtype: C |
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| Subtype: D |
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| Subtype: F1 |
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| Subtype: F2 |
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| Subtype: G |
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| Subtype: H |
| AF005496 |
3114562 |
HIV-1 isolate 90CR056 from Central African Republic, complete genome |
8953 |
| AF190127 |
6580983 |
HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. |
9056 |
| AF190128 |
6580993 |
HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. |
8955 |
|
| Subtype: J |
| AF082394 |
4336328 |
HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
8943 |
| AF082395 |
4336329 |
HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
8953 |
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| Subtype: K |
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| Subtype: N |
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| Subtype: O |
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| Subtype: U |
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| Subtype: CRF01 |
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| Subtype: CRF02 |
| L39106 |
1478056 |
Human immunodeficiency virus type 1 gag polyprotein (gag), pol polyprotein (pol), vpr protein (vpr), vif protein (vif), rev protein (rev), vpu protein (vpu), env polyprotein (env), and nef protein (nef) genes, complete cds. |
9201 |
| AF063224 |
3132810 |
HIV-1 isolate DJ264 from Djibouti, complete genome |
8961 |
| AF107770 |
5733940 |
HIV-1 isolate SE7812 from Sweden, complete genome |
9063 |
| AJ286133 |
7657888 |
Human immunodeficiency virus type 1 proviral gag gene (partial), pol gene, vif gene, vpr gene, vpu gene, env gene, nef gene, tat gene and rev gene, isolate 97CM.MP807 |
8801 |
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| Subtype: CRF03 |
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| Subtype: CRF04 |
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| Subtype: CRF05 |
| AF076998 |
5668954 |
HIV-1 isolate VI961 from Democratic Republic of the Congo, complete genome. |
8990 |
| AF193253 |
6651454 |
HIV-1 subtype F/D isolate VI1310 from Belgium gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
9083 |
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| Subtype: CRF06 |
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| Subtype: CRF07 |
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| Subtype: CRF08 |
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| Subtype: CRF09 |
| AY093603 |
29409294 |
HIV-1 isolate 95SN1795 from Senegal, complete genome |
8803 |
| AY093604 |
29409304 |
HIV-1 isolate 95SN7808 from Senegal, complete genome |
8777 |
| AY093605 |
29409314 |
HIV-1 isolate 96GH2911, complete genome |
9039 |
| AY093607 |
29409325 |
HIV-1 isolate 99DE4057, gag protein (gag) and pol protein genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, p |
8389 |
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| Subtype: CRF10 |
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| Subtype: CRF11 |
| AF179368 |
8886632 |
HIV-1 strain GR17 from Greece complete genome |
8935 |
| AJ291719 |
15209251 |
Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129 |
9737 |
| AJ291718 |
18073400 |
Human immunodeficiency virus type 1 complete genome, Cameroon strain 97CM-MP818 |
9711 |
| AJ291720 |
18073410 |
Human immunodeficiency virus type 1 complete genome, strain 99FR-MP1307 |
9769 |
| AF492623 |
22532281 |
HIV-1 isolate 96CM-4496 from Cameroon, complete genome |
8819 |
| AF492624 |
22532291 |
HIV-1 isolate 95CM-1816 from Cameroon, complete genome |
9017 |
| AY371149 |
38491733 |
HIV-1 isolate 01CM.0186ND from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef |
8409 |
| AY371150 |
38491743 |
HIV-1 isolate 01CM.4041HAN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8414 |
| AY371151 |
38491753 |
HIV-1 isolate 02CM.2190SA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef |
8384 |
| AY371152 |
38491763 |
HIV-1 isolate 02CM.1710LE from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; non |
8394 |
| AY371153 |
38491770 |
HIV-1 isolate 02CM.4118STN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8396 |
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| Subtype: CRF12 |
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| Subtype: CRF13 |
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| Subtype: CRF14 |
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| Subtype: CRF15 |
| AF516184 |
23194114 |
HIV-1 isolate CRF01_AE/B from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef prote |
8999 |
| AF529573 |
33328187 |
HIV-1 isolate 02TH.OUR1332 subtype CRF15_01B from Thailand, complete genome |
8867 |
| AF529572 |
33328197 |
HIV-1 isolate 02TH.OUR1331 subtype CRF15_01B from Thailand, complete genome |
8842 |
| AF530576 |
33328319 |
HIV-1 isolate 99TH.R2399 subtype CRF15_01B from Thailand, complete genome |
9017 |
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| Subtype: CRF16 |
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| Subtype: CPZ |
| X52154 |
58866 |
Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome |
9811 |
| AF103818 |
4336706 |
Simian immunodeficiency virus strain US, complete genome |
9788 |
| AF115393 |
6594657 |
Simian immunodeficiency virus strain SIVcpz, complete genome |
9170 |
| AJ271369 |
8920373 |
Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 |
9261 |
| U42720 |
9828659 |
Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, com |
9068 |
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HIV-2:
| Accession |
GI |
Title |
Length |
|
| Subtype: H2A |
| J04542 |
325654 |
Human immunodeficiency virus type 2 (HIV-2), complete proviral genome. |
9472 |
| M30895 |
325709 |
Human immunodeficiency virus type 2 (isolate GH-1) proviral DNA complete genome, clone 8. |
9480 |
| Z48731 |
732718 |
Human immunodeficiency virus type 2 gag, pol, vif, vpx, vpr, tat, rev, nef and env genes. |
9525 |
| U22047 |
747644 |
Human immunodeficiency virus type 2, complete genome. |
10172 |
| M30502 |
1332355 |
Human immunodeficiency virus 2 isolate BEN, complete genome |
10359 |
| J04498 |
1332357 |
Human immunodeficiency virus type 2, isolate SBLISY, complete genome. |
9636 |
| J03654 |
1332359 |
Human immunodeficiency virus type 2, isolate HIV2FG. |
9431 |
| M15390 |
1332361 |
Human immunodeficiency virus type 2, isolate ROD, complete proviral genome. |
9671 |
| M31113 |
1339798 |
Human immunodeficiency virus type 2 (HIV-2), complete proviral genome. |
9672 |
| U38293 |
1845204 |
Human immunodeficiency virus type 2, complete proviral genome. |
10312 |
| D00835 |
3153166 |
Human immunodeficiency virus type 2 proviral DNA, complete genome. |
11443 |
| AF082339 |
4007991 |
HIV-2 isolate ALI from Guinea-Bissau, complete genome |
10353 |
|
| Subtype: H2B |
|
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| Subtype: H2G |
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HTLV-1:
| Accession |
GI |
Title |
Length |
|
| Subtype: A |
|
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| Subtype: B |
|
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| Subtype: C |
|
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| Subtype: D |
|
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| Subtype: E |
|
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| Subtype: F |
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HTLV-2:
| Accession |
GI |
Title |
Length |
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| Subtype: A |
|
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| Subtype: B |
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| Subtype: D |
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HIV-1 (2005):
| Accession |
GI |
Title |
Length |
|
| Subtype: A1 |
| U51190 |
2570232 |
HIV-1 clone 92ug037 from Uganda, complete genome |
8999 |
| AF004885 |
2745742 |
HIV-1 isolate Q23-17 from Kenya, complete genome |
9160 |
| AF069670 |
3808250 |
HIV-1 isolate SE7253 from Somalia, gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, com |
8813 |
| AF484509 |
25166940 |
HIV-1 isolate 98UG57136 from Uganda, partial genome |
8807 |
|
| Subtype: A2 |
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| Subtype: B |
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| Subtype: C |
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| Subtype: CPZ |
| X52154 |
58866 |
Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome |
9811 |
| AJ271369 |
8920373 |
Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 |
9261 |
| U42720 |
9828659 |
Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, com |
9068 |
| AF447763 |
27448793 |
Simian immunodeficiency virus isolate SIVcpzTAN1, complete genome |
9326 |
|
| Subtype: D |
| K03454 |
326675 |
Human immunodeficiency virus type 1, isolate ELI, complete genome. |
9176 |
| U88824 |
2570307 |
HIV-1 isolate 94UG114 from Uganda complete genome |
8952 |
| AY253311 |
37682490 |
HIV-1 isolate 01TZA280 from Tanzania truncated gag protein (gag) gene, partial cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycopr |
8775 |
| AY371157 |
38491810 |
HIV-1 isolate 01CM.4412HAL from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8379 |
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| Subtype: F1 |
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| Subtype: F2 |
| AJ249236 |
6093141 |
Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 |
8555 |
| AJ249237 |
6093146 |
Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 |
8589 |
| AF377956 |
14290001 |
HIV-1 isolate CM53657 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds. |
8782 |
| AY371158 |
38491820 |
HIV-1 isolate 02CM.0016BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8349 |
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| Subtype: G |
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| Subtype: H |
| AF005496 |
3114562 |
HIV-1 isolate 90CR056 from Central African Republic, complete genome |
8953 |
| AF190127 |
6580983 |
HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. |
9056 |
| AF190128 |
6580993 |
HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. |
8955 |
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| Subtype: J |
| AF082394 |
4336328 |
HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
8943 |
| AF082395 |
4336329 |
HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
8953 |
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| Subtype: K |
|
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| Subtype: N |
|
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| Subtype: O |
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HIV-1 (2005) & CFRs:
| Accession |
GI |
Title |
Length |
|
| Subtype: 01_AE |
|
|
| Subtype: 02_AG |
| L39106 |
1478056 |
Human immunodeficiency virus type 1 gag polyprotein (gag), pol polyprotein (pol), vpr protein (vpr), vif protein (vif), rev protein (rev), vpu protein (vpu), env polyprotein (env), and nef protein (nef) genes, complete cds. |
9201 |
| AF063224 |
3132810 |
HIV-1 isolate DJ264 from Djibouti, complete genome |
8961 |
| AF107770 |
5733940 |
HIV-1 isolate SE7812 from Sweden, complete genome |
9063 |
| AJ286133 |
7657888 |
Human immunodeficiency virus type 1 proviral gag gene (partial), pol gene, vif gene, vpr gene, vpu gene, env gene, nef gene, tat gene and rev gene, isolate 97CM.MP807 |
8801 |
|
| Subtype: 03_AB |
|
|
| Subtype: 04_CPX |
|
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| Subtype: 05_DF |
| AF076998 |
5668954 |
HIV-1 isolate VI961 from Democratic Republic of the Congo, complete genome. |
8990 |
| AF193253 |
6651454 |
HIV-1 subtype F/D isolate VI1310 from Belgium gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
9083 |
|
| Subtype: 06_CPX |
|
|
| Subtype: 07_BC |
|
|
| Subtype: 08_BC |
|
|
| Subtype: 09_CPX |
| AY093603 |
29409294 |
HIV-1 isolate 95SN1795 from Senegal, complete genome |
8803 |
| AY093604 |
29409304 |
HIV-1 isolate 95SN7808 from Senegal, complete genome |
8777 |
| AY093605 |
29409314 |
HIV-1 isolate 96GH2911, complete genome |
9039 |
| AY093607 |
29409325 |
HIV-1 isolate 99DE4057, gag protein (gag) and pol protein genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, p |
8389 |
|
| Subtype: 10_CD |
|
|
| Subtype: 11_CPX |
| AF179368 |
8886632 |
HIV-1 strain GR17 from Greece complete genome |
8935 |
| AJ291719 |
15209251 |
Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129 |
9737 |
| AJ291718 |
18073400 |
Human immunodeficiency virus type 1 complete genome, Cameroon strain 97CM-MP818 |
9711 |
| AJ291720 |
18073410 |
Human immunodeficiency virus type 1 complete genome, strain 99FR-MP1307 |
9769 |
| AF492623 |
22532281 |
HIV-1 isolate 96CM-4496 from Cameroon, complete genome |
8819 |
| AF492624 |
22532291 |
HIV-1 isolate 95CM-1816 from Cameroon, complete genome |
9017 |
| AY371149 |
38491733 |
HIV-1 isolate 01CM.0186ND from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef |
8409 |
| AY371150 |
38491743 |
HIV-1 isolate 01CM.4041HAN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8414 |
| AY371151 |
38491753 |
HIV-1 isolate 02CM.2190SA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef |
8384 |
| AY371152 |
38491763 |
HIV-1 isolate 02CM.1710LE from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; non |
8394 |
| AY371153 |
38491770 |
HIV-1 isolate 02CM.4118STN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8396 |
|
| Subtype: 12_BF |
|
|
| Subtype: 13_CPX |
|
|
| Subtype: 14_BG |
|
|
| Subtype: 15_01B |
| AF516184 |
23194114 |
HIV-1 isolate CRF01_AE/B from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef prote |
8999 |
| AF529573 |
33328187 |
HIV-1 isolate 02TH.OUR1332 subtype CRF15_01B from Thailand, complete genome |
8867 |
| AF529572 |
33328197 |
HIV-1 isolate 02TH.OUR1331 subtype CRF15_01B from Thailand, complete genome |
8842 |
| AF530576 |
33328319 |
HIV-1 isolate 99TH.R2399 subtype CRF15_01B from Thailand, complete genome |
9017 |
|
| Subtype: 16_A2D |
|
|
| Subtype: 18_CPX |
|
|
| Subtype: 19_CPX |
|
|
| Subtype: A1 |
| U51190 |
2570232 |
HIV-1 clone 92ug037 from Uganda, complete genome |
8999 |
| AF004885 |
2745742 |
HIV-1 isolate Q23-17 from Kenya, complete genome |
9160 |
| AF069670 |
3808250 |
HIV-1 isolate SE7253 from Somalia, gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, com |
8813 |
| AF484509 |
25166940 |
HIV-1 isolate 98UG57136 from Uganda, partial genome |
8807 |
|
| Subtype: A2 |
|
|
| Subtype: B |
|
|
| Subtype: C |
|
|
| Subtype: CPZ |
| X52154 |
58866 |
Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome |
9811 |
| AJ271369 |
8920373 |
Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 |
9261 |
| U42720 |
9828659 |
Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, com |
9068 |
| AF447763 |
27448793 |
Simian immunodeficiency virus isolate SIVcpzTAN1, complete genome |
9326 |
|
| Subtype: D |
| K03454 |
326675 |
Human immunodeficiency virus type 1, isolate ELI, complete genome. |
9176 |
| U88824 |
2570307 |
HIV-1 isolate 94UG114 from Uganda complete genome |
8952 |
| AY253311 |
37682490 |
HIV-1 isolate 01TZA280 from Tanzania truncated gag protein (gag) gene, partial cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycopr |
8775 |
| AY371157 |
38491810 |
HIV-1 isolate 01CM.4412HAL from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8379 |
|
| Subtype: F1 |
|
|
| Subtype: F2 |
| AJ249236 |
6093141 |
Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 |
8555 |
| AJ249237 |
6093146 |
Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 |
8589 |
| AF377956 |
14290001 |
HIV-1 isolate CM53657 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds. |
8782 |
| AY371158 |
38491820 |
HIV-1 isolate 02CM.0016BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne |
8349 |
|
| Subtype: G |
|
|
| Subtype: H |
| AF005496 |
3114562 |
HIV-1 isolate 90CR056 from Central African Republic, complete genome |
8953 |
| AF190127 |
6580983 |
HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. |
9056 |
| AF190128 |
6580993 |
HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. |
8955 |
|
| Subtype: J |
| AF082394 |
4336328 |
HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
8943 |
| AF082395 |
4336329 |
HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. |
8953 |
|
| Subtype: K |
|
|
| Subtype: N |
|
|
| Subtype: O |
|
|
|
Return to page contents
|
|
HIV-1 (2007):
| Accession |
GI |
Title |
Length |
|
| Subtype: 01_AE |
|
|
| Subtype: 02_AG |
|
|
| Subtype: 03_AB |
|
|
| Subtype: 04_cpx |
|
|
| Subtype: 05_DF |
|
|
| Subtype: 06_cpx |
|
|
| Subtype: 07_BC |
|
|
| Subtype: 08_BC |
|
|
| Subtype: 09_cpx |
|
|
| Subtype: 10_CD |
|
|
| Subtype: 11_cpx |
|
|
| Subtype: 12_BF |
|
|
| Subtype: 13_cpx |
|
|
| Subtype: 14_BG |
|
|
| Subtype: 15_01B |
|
|
| Subtype: 16_A2D |
|
|
| Subtype: 18_cpx |
|
|
| Subtype: 19_cpx |
|
|
| Subtype: 20_BG |
|
|
| Subtype: 21_A2D |
|
|
| Subtype: 23_BG |
|
|
| Subtype: 24_BG |
|
|
| Subtype: 25_cpx |
|
|
| Subtype: 27_cpx |
|
|
| Subtype: 28_BF |
|
|
| Subtype: 29_BF |
|
|
| Subtype: 31_BC |
|
|
| Subtype: 33_01B |
|
|
| Subtype: 34_01B |
|
|
| Subtype: 35_AD |
|
|
| Subtype: 36_cpx |
|
|
| Subtype: 37_cpx |
|
|
| Subtype: 42_BF |
|
|
| Subtype: A1 |
|
|
| Subtype: A2 |
|
|
| Subtype: B |
|
|
| Subtype: C |
|
|
| Subtype: CPZ |
| AF103818 |
4336706 |
Simian immunodeficiency virus strain US, complete genome |
9788 |
| U42720 |
9828659 |
Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, complete cds |
9068 |
| DQ373066 |
87083840 |
Simian immunodeficiency virus isolate SIVcpzMT145, complete genome |
9208 |
|
| Subtype: D |
| K03454 |
326675 |
Human immunodeficiency virus type 1, isolate ELI, complete genome |
9176 |
| U88824 |
2570307 |
HIV-1 isolate 94UG114 from Uganda complete genome |
8952 |
| AY253311 |
37682490 |
HIV-1 isolate 01TZA280 from Tanzania truncated gag protein (gag) gene, partial cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8775 |
| AY371157 |
38491810 |
HIV-1 isolate 01CM.4412HAL from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8379 |
|
| Subtype: F1 |
|
|
| Subtype: F2 |
| AJ249236 |
6093141 |
Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 |
8555 |
| AJ249237 |
6093146 |
Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 |
8589 |
| AF377956 |
14290001 |
HIV-1 isolate CM53657 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds |
8782 |
| AY371158 |
38491820 |
HIV-1 isolate 02CM.0016BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8349 |
|
| Subtype: G |
|
|
| Subtype: H |
| AF005496 |
3114562 |
HIV-1 isolate 90CR056 from Central African Republic, complete genome |
8953 |
| AF190127 |
6580983 |
HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds |
9056 |
| AF190128 |
6580993 |
HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds |
8955 |
|
| Subtype: J |
| AF082394 |
4336328 |
HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8943 |
| AF082395 |
4336329 |
HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8953 |
| EF614151 |
149126362 |
HIV-1 isolate J_97DC.KTB147 from Democratic Republic of the Congo nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8739 |
|
| Subtype: K |
|
|
| Subtype: N |
|
|
| Subtype: O |
|
|
|
Return to page contents
|
|
HIV-1 (2009):
| Accession |
GI |
Title |
Length |
|
| Subtype: 01_AE |
|
|
| Subtype: 02_AG |
| L39106 |
1478056 |
Human immunodeficiency virus type 1 gag polyprotein (gag), pol polyprotein (pol), vpr protein (vpr), vif protein (vif), rev protein (rev), vpu protein (vpu), env polyprotein (env), and nef protein (nef) genes, complete cds |
9201 |
| AF063224 |
3132810 |
HIV-1 isolate DJ264 from Djibouti, complete genome |
8961 |
| AF107770 |
5733940 |
HIV-1 isolate SE7812 from Sweden, complete genome |
9063 |
| AJ286133 |
7657888 |
Human immunodeficiency virus type 1 proviral gag gene (partial), pol gene, vif gene, vpr gene, vpu gene, env gene, nef gene, tat gene and rev gene, isolate 97CM.MP807 |
8801 |
|
| Subtype: 03_AB |
|
|
| Subtype: 04_CPX |
|
|
| Subtype: 05_DF |
| AF076998 |
5668954 |
HIV-1 isolate VI961 from Democratic Republic of the Congo, complete genome |
8990 |
| AF193253 |
6651454 |
HIV-1 subtype F/D isolate VI1310 from Belgium gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9083 |
|
| Subtype: 06_CPX |
|
|
| Subtype: 07_BC |
|
|
| Subtype: 08_BC |
|
|
| Subtype: 09_CPX |
| AY093603 |
29409294 |
HIV-1 isolate 95SN1795 from Senegal, complete genome |
8803 |
| AY093604 |
29409304 |
HIV-1 isolate 95SN7808 from Senegal, complete genome |
8777 |
| AY093605 |
29409314 |
HIV-1 isolate 96GH2911, complete genome |
9039 |
| AY093607 |
29409325 |
HIV-1 isolate 99DE4057, gag protein (gag) and pol protein genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8389 |
|
| Subtype: 10_CD |
|
|
| Subtype: 11_CPX |
| AF179368 |
8886632 |
HIV-1 strain GR17 from Greece complete genome |
8935 |
| AJ291719 |
15209251 |
Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129 |
9737 |
| AJ291718 |
18073400 |
Human immunodeficiency virus type 1 complete genome, Cameroon strain 97CM-MP818 |
9711 |
| AJ291720 |
18073410 |
Human immunodeficiency virus type 1 complete genome, strain 99FR-MP1307 |
9769 |
| AF492623 |
22532281 |
HIV-1 isolate 96CM-4496 from Cameroon, complete genome |
8819 |
| AF492624 |
22532291 |
HIV-1 isolate 95CM-1816 from Cameroon, complete genome |
9017 |
| AY371149 |
38491733 |
HIV-1 isolate 01CM.0186ND from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8409 |
| AY371150 |
38491743 |
HIV-1 isolate 01CM.4041HAN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8414 |
| AY371151 |
38491753 |
HIV-1 isolate 02CM.2190SA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8384 |
| AY371152 |
38491763 |
HIV-1 isolate 02CM.1710LE from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, partial cds |
8394 |
| AY371153 |
38491770 |
HIV-1 isolate 02CM.4118STN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8396 |
|
| Subtype: 12_BF |
| AF385934 |
14579592 |
HIV-1 isolate URTR23 from Uruguay, complete genome |
9770 |
| AF385935 |
14579602 |
HIV-1 isolate URTR35 from Uruguay, complete genome |
9762 |
| AF385936 |
14579612 |
HIV-1 isolate ARMA159 from Argentina, complete genome |
9704 |
| AF408629 |
15788267 |
HIV-1 isolate A32879 from Argentina, complete genome |
9192 |
| AF408630 |
15788277 |
HIV-1 isolate A32989 from Argentina, complete genome |
9174 |
| AY037279 |
16118359 |
HIV-1 isolate ARMA185 from Argentina nonfunctional gag protein and nonfunctional pol protein genes, partial sequence; nonfunctional vif protein and nonfunctional vpr protein genes, complete sequence; tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; and nonfunctional envelope glycoprotein and nonfunctional nef protein genes, complete sequence |
8760 |
|
| Subtype: 13_CPX |
| AF460972 |
22532130 |
HIV-1 isolate 96CM-1849 from Cameroon, complete genome |
8916 |
| AF460974 |
22532140 |
HIV-1 isolate 96CM-4164 from Cameroon, complete genome |
8854 |
| AY371154 |
38491780 |
HIV-1 isolate 02CM.3226MN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8448 |
|
| Subtype: 14_BG |
|
|
| Subtype: 15_01B |
| AF516184 |
23194114 |
HIV-1 isolate CRF01_AE/B from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8999 |
| AF529573 |
33328187 |
HIV-1 isolate 02TH.OUR1332 subtype CRF15_01B from Thailand, complete genome |
8867 |
| AF529572 |
33328197 |
HIV-1 isolate 02TH.OUR1331 subtype CRF15_01B from Thailand, complete genome |
8842 |
| AF530576 |
33328319 |
HIV-1 isolate 99TH.R2399 subtype CRF15_01B from Thailand, complete genome |
9017 |
|
| Subtype: 16_A2D |
|
|
| Subtype: 17_BF |
| AY037281 |
16118373 |
HIV-1 isolate ARMA038 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8808 |
| EU581825 |
187371915 |
HIV-1 isolate AR02.ARG1139 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), mutant rev protein (rev), vpu protein (vpu), mutant envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8775 |
| EU581826 |
187371924 |
HIV-1 isolate AR02.ARG2233 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; and vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8855 |
| EU581827 |
187371933 |
HIV-1 isolate BO02.BOL119 from Bolivia gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8795 |
| EU581828 |
187371943 |
HIV-1 isolate PE02.PCR0155 from Peru gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8818 |
|
| Subtype: 18_CPX |
|
|
| Subtype: 19_CPX |
|
|
| Subtype: 20_BG |
|
|
| Subtype: 21_A2D |
|
|
| Subtype: 22_01A1 |
| AY037284 |
15982642 |
HIV-1 from Cameroon pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat) and rev protein (rev) genes, partial cds |
5191 |
| AY371159 |
38491830 |
HIV-1 isolate 01CM.0001BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8372 |
|
| Subtype: 23_BG |
|
|
| Subtype: 24_BG |
|
|
| Subtype: 25_CPX |
| AY371169 |
38491925 |
HIV-1 isolate 02CM.1918LE from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8425 |
| DQ826726 |
110809904 |
HIV-1 isolate 101BA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8882 |
|
| Subtype: 26_A5U |
|
|
| Subtype: 27_CPX |
| AJ404325 |
12407072 |
Human immunodeficiency virus type 1 proviral gag gene, pol gene, vif gene, vpr gene, vpu gene, env gene and nef gene |
8936 |
| AM851090 |
157885880 |
Human immunodeficiency virus type 1 02CD.LBR024 proviral gag gene (partial), vif gene, nef gene and env gene |
8825 |
| AM851091 |
157885885 |
Human immunodeficiency virus type 1 04CD.FR.KZS proviral gag gene, pol gene, vif gene, vpr gene, vpu gene, env gene and nef gene |
9745 |
|
| Subtype: 28_BF |
|
|
| Subtype: 29_BF |
|
|
| Subtype: 30_0206 |
|
|
| Subtype: 31_BC |
| AY727526 |
56193074 |
HIV-1 isolate 04BR137 from Brazil gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8795 |
| AY727527 |
56193090 |
HIV-1 isolate 04BR142 from Brazil gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9057 |
| EF091932 |
119370128 |
HIV-1 isolate 110PA from Brazil, complete genome |
8908 |
|
| Subtype: 32_06A1 |
| AY535660 |
46243163 |
HIV-1 isolate EE0369 from Estonia, complete genome |
9229 |
| DQ167215 |
74052532 |
HIV-1 isolate EST2002-1169 from Estonia gag protein (gag) gene, complete cds; aberrant pol protein (pol) gene, partial cds; truncated vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8404 |
|
| Subtype: 33_01B |
|
|
| Subtype: 34_01B |
| EF165539 |
134254987 |
HIV-1 isolate OUR1969P from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8668 |
| EF165540 |
134254997 |
HIV-1 isolate OUR2275P from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8728 |
| EF165541 |
134255007 |
HIV-1 isolate OUR2478P from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8650 |
|
| Subtype: 35_AD |
| EF158040 |
126567728 |
HIV-1 isolate 05AF094 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8775 |
| EF158041 |
126567738 |
HIV-1 isolate 05AF095 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds |
8703 |
| EF158042 |
126567747 |
HIV-1 isolate 05AF104 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8730 |
| EF158043 |
126567757 |
HIV-1 isolate 05AF026 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8727 |
|
| Subtype: 36_CPX |
| EF087994 |
126517815 |
HIV-1 isolate 00CMNYU830 from Cameroon nonfunctional gag protein (gag) gene, partial sequence; pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8410 |
| EF087995 |
126517821 |
HIV-1 isolate 00CMNYU1162 from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; nonfunctional vif protein (vif) gene, complete sequence; vpr protein (vpr), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8412 |
|
| Subtype: 37_CPX |
| AF377957 |
14290010 |
HIV-1 isolate CM53392 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds |
8896 |
| EF116594 |
133711118 |
HIV-1 isolate 00CMNYU926 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, partial cds |
8396 |
|
| Subtype: 38_BF |
|
|
| Subtype: 39_BF |
|
|
| Subtype: 40_BF |
|
|
| Subtype: 42_BF |
|
|
| Subtype: 43_02G |
|
|
| Subtype: 44_BF |
|
|
| Subtype: 45_CPX |
|
|
| Subtype: 46_BF |
|
|
| Subtype: 47_BF |
|
|
| Subtype: 48_01B |
|
|
| Subtype: 49_CPX |
|
|
| Subtype: 50_A1D |
| JN417236 |
350432380 |
HIV-1 isolate 8179 from United Kingdom nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; nonfunctional vif protein (vif) gene, complete sequence; vpr protein (vpr) gene, complete cds; nonfunctional tat protein (tat) gene, complete sequence; rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, complete cds |
8939 |
| JN417237 |
350432387 |
HIV-1 isolate 40534 from United Kingdom gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, complete cds |
8790 |
| JN417239 |
350432408 |
HIV-1 isolate 33365 from United Kingdom gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; rev protein (rev) gene, complete cds; nonfunctional vpu protein (vpu) and nonfunctional env protein (env) genes, complete sequence; and nef protein (nef) gene, complete cds |
8931 |
| JN417240 |
350432431 |
HIV-1 isolate 12792 from United Kingdom nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8978 |
| JN417241 |
350432445 |
HIV-1 isolate 11762 from United Kingdom gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8932 |
|
| Subtype: 51_01B |
| JN029801 |
344922773 |
HIV-1 isolate 11SG.HM021 from Singapore gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8807 |
| JN029802 |
344922783 |
HIV-1 isolate 11SG.HM062 from Singapore nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; nonfunctional vif protein (vif), nonfunctional vpr protein (vpr), nonfunctional tat protein (tat), and nonfunctional rev protein (rev) genes, complete sequence; vpu protein (vpu) gene, complete cds; and nonfunctional env protein (env) and nonfunctional nef protein (nef) genes, complete sequence |
8789 |
| JN029803 |
344922785 |
HIV-1 isolate 11SG.HM091 from Singapore gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8819 |
|
| Subtype: 52_01B |
| AY945734 |
63014607 |
HIV-1 isolate 00TH.R1741 from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8395 |
| DQ366664 |
86371884 |
HIV-1 isolate 03MYKL018.1 from Malaysia, complete genome |
8925 |
| DQ354113 |
86560153 |
HIV-1 isolate M043 subtype CRF01_AE/B from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8796 |
|
| Subtype: 53_01B |
|
|
| Subtype: 54_01B |
|
|
| Subtype: 55_01B |
|
|
| Subtype: 56_CPX |
| JN882655 |
378812683 |
Human immunodeficiency virus strain URF5 gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and env glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8396 |
| KC852172 |
560188043 |
HIV-1 strain 11111583 isolate patient B from France, complete genome |
8781 |
| KC852173 |
560188053 |
HIV-1 strain 11111584 isolate patient D from France, complete genome |
8930 |
| KC852174 |
560188063 |
HIV-1 strain 750820BMZ isolate patient C from France, complete genome |
8923 |
|
| Subtype: 57_BC |
| HM776939 |
314907108 |
HIV-1 clone 341 from China, complete genome |
8939 |
| JX679207 |
408526187 |
Human immunodeficiency virus from China isolate 1439, partial genome |
8929 |
| KC899008 |
512780360 |
HIV-1 isolate 09YNLX19sg from China, complete genome |
8813 |
| KC870044 |
546463996 |
HIV-1 isolate YNFL37 from China gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8980 |
| KF250400 |
558095149 |
HIV-1 isolate DH17 from China gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional vpu protein (vpu) gene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds |
8932 |
|
| Subtype: 58_01B |
| KF425293 |
566893809 |
HIV-1 isolate 10MYPR87 from Malaysia, complete genome |
8931 |
| KC522031 |
568599625 |
HIV-1 isolate 09MYPR37 from Malaysia, complete genome |
8975 |
| KC522032 |
568599635 |
HIV-1 isolate 11MY1ZK731 from Malaysia, complete genome |
8939 |
| KC522033 |
568599645 |
HIV-1 isolate 11MY1RJ704 from Malaysia, complete genome |
8914 |
| KC522034 |
568599655 |
HIV-1 isolate 11MY1EP794 from Malaysia, complete genome |
8902 |
| KC522035 |
568599665 |
HIV-1 isolate 10MYKJ036 from Malaysia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8567 |
|
| Subtype: 59_01B |
|
|
| Subtype: 60_BC |
|
|
| Subtype: 61_BC |
| KC990124 |
485099461 |
HIV-1 isolate JL100010 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9024 |
| KC990125 |
485099470 |
HIV-1 isolate FJ070004 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9087 |
| KC990126 |
485099479 |
HIV-1 isolate JL070009 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9080 |
|
| Subtype: 62_BC |
| KC870034 |
546463826 |
HIV-1 isolate YNFL13 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional vpu protein (vpu) gene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds |
8969 |
| KC870035 |
546463844 |
HIV-1 isolate YNFL15 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nonfunctional nef protein (nef) gene, complete sequence |
9045 |
| KC870037 |
546463876 |
HIV-1 isolate YNFL18 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8956 |
|
| Subtype: 63_02A |
|
|
| Subtype: 64_BC |
| KC870032 |
546463794 |
HIV-1 isolate YNFL10_1 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9090 |
| KC870036 |
546463860 |
HIV-1 isolate YNFL16 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8936 |
| KC870040 |
546463924 |
HIV-1 isolate YNFL22 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8911 |
| KC870042 |
546463960 |
HIV-1 isolate YNFL31 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8969 |
| KC870043 |
546463979 |
HIV-1 isolate YNFL33 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8935 |
|
| Subtype: 65_CPX |
| KC183778 |
451312332 |
HIV-1 isolate 2011.ANHUI.HF104 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8930 |
| KC870027 |
546463715 |
HIV-1 isolate YNFL01 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9038 |
| KC870028 |
546463734 |
HIV-1 isolate YNFL02 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9046 |
| KC870030 |
546463762 |
HIV-1 isolate YNFL05 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9012 |
|
| Subtype: 67_01B |
| KC183779 |
451312342 |
HIV-1 isolate 2011.ANHUI.HF115 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8918 |
| KC183780 |
451312352 |
HIV-1 isolate 2011.ANHUI.MAS59 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8942 |
|
| Subtype: 68_01B |
| KC183782 |
451312372 |
HIV-1 isolate 2011.ANHUI.WH73 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8903 |
| KC183783 |
451312382 |
HIV-1 isolate 2011.ANHUI.XC46 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8919 |
| KF758551 |
577030011 |
HIV-1 isolate JS2010001 from China, partial genome |
8395 |
|
| Subtype: 69_01B |
|
|
| Subtype: 70_BF |
| KJ849758 |
672918624 |
HIV-1 isolate 10BR_PE004 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8524 |
| KJ849761 |
672918654 |
HIV-1 isolate 10BR_PE016 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9064 |
| KJ849762 |
672918664 |
HIV-1 isolate 10BR_PE025 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8541 |
| KJ849809 |
672919105 |
HIV-1 isolate 10BR_RJ046 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8831 |
|
| Subtype: 71_BF |
| DQ358811 |
86277636 |
HIV-1 isolate 02BR033 from Brazil, complete genome |
8875 |
| KJ849759 |
672918634 |
HIV-1 isolate 10BR_PE008 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9236 |
| KJ849760 |
672918644 |
HIV-1 isolate 10BR_PE009 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8314 |
| KJ849769 |
672918720 |
HIV-1 isolate 10BR_PE064 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8519 |
| KJ849770 |
672918730 |
HIV-1 isolate 10BR_PE066 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8538 |
| KJ849771 |
672918740 |
HIV-1 isolate 10BR_PE071 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9104 |
| KJ849773 |
672918756 |
HIV-1 isolate 10BR_PE084 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8674 |
| KJ849775 |
672918776 |
HIV-1 isolate 10BR_PE087 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8999 |
| KJ849776 |
672918786 |
HIV-1 isolate 10BR_PE088 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
9023 |
| KJ849777 |
672918796 |
HIV-1 isolate 10BR_PE090 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds |
8526 |
| KJ849778 |
672918806 |
HIV-1 isolate 10BR_PE092 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9011 |
| KJ849779 |
672918816 |
HIV-1 isolate 10BR_PE094 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
9213 |
| KT427816 |
985577960 |
HIV-1 isolate 10BR_SP026 from Brazil genomic sequence |
8968 |
|
| Subtype: 72_BF |
|
|
| Subtype: 73_BG |
| AY882421 |
62361768 |
HIV-1 isolate 9196/01 from Germany, complete genome |
9062 |
| KM248765 |
729772039 |
HIV-1 isolate X3208 from Spain gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8997 |
|
| Subtype: 74_01B |
|
|
| Subtype: 78_CPX |
|
|
| Subtype: A1 |
|
|
| Subtype: A2 |
| AF286237 |
14530236 |
HIV-1 isolate 94CY017.41 from Cyprus, complete genome |
9060 |
| AF286238 |
14530245 |
HIV-1 isolate 97CDKTB48 from Republic of the Congo, complete genome |
8972 |
| GU201516 |
282598132 |
HIV-1 isolate 01CM.1445MV from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8832 |
|
| Subtype: A3 |
| AY521629 |
46946825 |
HIV-1 isolate DDI579 from Senegal gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; rev protein-like gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8801 |
| AY521630 |
46946834 |
HIV-1 isolate DDJ360 from Senegal gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; rev protein-like gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8777 |
| AY521631 |
46946843 |
HIV-1 isolate DDJ369 from Senegal gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; rev protein-like gene, complete sequence; vpu protein (vpu) gene, complete cds; envelope glycoprotein-like gene, complete sequence; and nef protein (nef) gene, complete cds |
8861 |
|
| Subtype: A4 |
|
|
| Subtype: A6 |
| AY500393 |
41353551 |
HIV-1 isolate 03RU20-06-13 from Russia, complete genome |
9159 |
| AY829212 |
56609326 |
HIV-1 isolate 02UZ0672 from Uzbekistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8816 |
| DQ207944 |
78172850 |
HIV-1 isolate 99GEMZ011 from Georgia gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8792 |
| EF589039 |
148469875 |
HIV-1 isolate 02KZPAV300497 from Kazakhstan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8818 |
| EF545108 |
151368121 |
HIV-1 isolate RU00051 from Russia, complete genome |
8806 |
|
| Subtype: B |
| M17451 |
328565 |
Human immunodeficiency virus type 1, isolate RF (HAT-3), complete genome |
9128 |
| U63632 |
1465777 |
HIV-1 isolate JRFL (USA) gag, pol, vif, vpr, tat, rev and env genes, complete cds |
8896 |
| U21135 |
1772624 |
Human immunodeficiency virus type 1 clone WEAU 1.60, complete genome |
9720 |
| K03455 |
1906382 |
Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome |
9719 |
|
| Subtype: C |
|
|
| Subtype: CPZ |
| X52154 |
58866 |
Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome |
9811 |
| AJ271369 |
8920373 |
Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 |
9261 |
| U42720 |
9828659 |
Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, complete cds |
9068 |
| AF447763 |
27448793 |
Simian immunodeficiency virus isolate SIVcpzTAN1, complete genome |
9326 |
|
| Subtype: D |
|
|
| Subtype: F1 |
|
|
| Subtype: F2 |
|
|
| Subtype: G |
|
|
| Subtype: GOR |
|
|
| Subtype: H |
| AF005496 |
3114562 |
HIV-1 isolate 90CR056 from Central African Republic, complete genome |
8953 |
| AF190127 |
6580983 |
HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds |
9056 |
| AF190128 |
6580993 |
HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds |
8955 |
|
| Subtype: J |
| AF082394 |
4336328 |
HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8943 |
| AF082395 |
4336329 |
HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds |
8953 |
|
| Subtype: K |
|
|
| Subtype: N |
|
|
| Subtype: O |
|
|
| Subtype: P |
|
|
| Subtype: U |
| AF286236 |
14530226 |
HIV-1 isolate 83CD003 from Republic of the Congo, complete genome |
9060 |
| AY046058 |
17352343 |
HIV-l from Greece, complete genome |
8909 |
| AF457101 |
17981618 |
HIV-1 isolate 90CD121E12 from Democratic Republic of the Congo gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds; and long terminal repeat, partial sequence |
8784 |
|
|
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