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    selenos selenoprotein S [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102232545, updated on 10-Mar-2024

    Summary

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    Gene symbol
    selenos
    Gene description
    selenoprotein S
    See related
    Ensembl:ENSXMAG00000001446
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Also known as
    vimp
    Orthologs
    human zebrafish all
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    Genomic context

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    See selenos in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 4 NC_036446.1 (33480512..33484854, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372260.1 (1539218..1543781, complement)

    Chromosome 4 - NC_036446.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat kinase 1 Neighboring gene chondroitin sulfate synthase 1 Neighboring gene mucin-5AC-like Neighboring gene small nuclear ribonucleoprotein polypeptide A'

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde protein transport, ER to cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Derlin-1 retrotranslocation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of Derlin-1-VIMP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    selenoprotein S
    Names
    VCP interacting membrane selenoprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036446.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      33480512..33484854 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005802662.2 → XP_005802719.1  selenoprotein S

      UniProtKB/TrEMBL
      M3ZGU9
      Related
      ENSXMAP00000001441.1, ENSXMAT00000001444.2
      Conserved Domains (1) summary
      pfam06936
      Location:15 → 190
      Selenoprotein_S; Selenoprotein S (SelS)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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