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    Rps5 ribosomal protein S5 [ Rattus rattus (black rat) ]

    Gene ID: 116892631, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Rps5
    Gene description
    ribosomal protein S5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    human mouse all
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    Genomic context

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    See Rps5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 2 NC_046155.1 (174251112..174254584, complement)

    Chromosome 2 - NC_046155.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 446 Neighboring gene zinc finger protein 324 Neighboring gene ring finger protein 225 Neighboring gene zinc finger and SCAN domain containing 22 Neighboring gene zinc finger protein 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046155.1 Chromosome 2 Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The primary structure of rat ribosomal protein S5. A ribosomal protein present in the rat genome in a single copy. Kuwano Y, et al. J Biol Chem, 1992 Dec 15. PMID 1460027
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046155.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      174251112..174254584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032894452.1 → XP_032750343.1  40S ribosomal protein S5

      Conserved Domains (1) summary
      cd14867
      Location:18 → 204
      uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7
    Nucleotide Protein
    Heading Accession and Version

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