Name: rs11396609
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11396609

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr10:1036005-1036016 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delTTT / delTT / delT / dupT / dup…
delTTT / delTT / delT / dupT / dupTT / dupTTT
Variation Type: Indel Insertion and Deletion
Frequency: dupT=0.08072 (910/11274, ALFA)
dupT=0.1869 (936/5008, 1000G)
dupT=0.2693 (1038/3854, ALSPAC) (+ 2 more)
dupT=0.2686 (996/3708, TWINSUK)
dupT=0.243 (145/596, NorthernSweden)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: IDI2-AS1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	11274	TTTTTTTTTTTT=0.91911	TTTTTTTTTT=0.00000, TTTTTTTTTTT=0.00018, TTTTTTTTTTTTT=0.08072, TTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTT=0.00000	0.862112	0.023425	0.114463	32
European	Sub	8286	TTTTTTTTTTTT=0.8902	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0002, TTTTTTTTTTTTT=0.1096, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000	0.812847	0.031876	0.155277	32
African	Sub	2208	TTTTTTTTTTTT=1.0000	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	96	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	2112	TTTTTTTTTTTT=1.0000	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	54	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	42	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	12	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	76	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	324	TTTTTTTTTTTT=1.000	TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	42	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	284	TTTTTTTTTTTT=0.993	TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.007, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	0.985915	0.0	0.014085	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	11274	(T)₁₂=0.91911	delTT=0.00000, delT=0.00018, dupT=0.08072, dupTT=0.00000, dupTTT=0.00000
Allele Frequency Aggregator	European	Sub	8286	(T)₁₂=0.8902	delTT=0.0000, delT=0.0002, dupT=0.1096, dupTT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	African	Sub	2208	(T)₁₂=1.0000	delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	324	(T)₁₂=1.000	delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	284	(T)₁₂=0.993	delTT=0.000, delT=0.000, dupT=0.007, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Latin American 1	Sub	76	(T)₁₂=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Asian	Sub	54	(T)₁₂=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	South Asian	Sub	42	(T)₁₂=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
1000Genomes	Global	Study-wide	5008	- No frequency provided	dupT=0.1869
1000Genomes	African	Sub	1322	- No frequency provided	dupT=0.0779
1000Genomes	East Asian	Sub	1008	- No frequency provided	dupT=0.2282
1000Genomes	Europe	Sub	1006	- No frequency provided	dupT=0.2167
1000Genomes	South Asian	Sub	978	- No frequency provided	dupT=0.257
1000Genomes	American	Sub	694	- No frequency provided	dupT=0.193
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	- No frequency provided	dupT=0.2693
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	- No frequency provided	dupT=0.2686
Northern Sweden	ACPOP	Study-wide	596	- No frequency provided	dupT=0.243

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 10	NC_000010.11:g.1036014_1036016del
GRCh38.p14 chr 10	NC_000010.11:g.1036015_1036016del
GRCh38.p14 chr 10	NC_000010.11:g.1036016del
GRCh38.p14 chr 10	NC_000010.11:g.1036016dup
GRCh38.p14 chr 10	NC_000010.11:g.1036015_1036016dup
GRCh38.p14 chr 10	NC_000010.11:g.1036014_1036016dup
GRCh37.p13 chr 10	NC_000010.10:g.1081954_1081956del
GRCh37.p13 chr 10	NC_000010.10:g.1081955_1081956del
GRCh37.p13 chr 10	NC_000010.10:g.1081956del
GRCh37.p13 chr 10	NC_000010.10:g.1081956dup
GRCh37.p13 chr 10	NC_000010.10:g.1081955_1081956dup
GRCh37.p13 chr 10	NC_000010.10:g.1081954_1081956dup

Gene: IDI2-AS1, IDI2 antisense RNA 1 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
IDI2-AS1 transcript variant 1	NR_024628.1:n.	N/A	Intron Variant
IDI2-AS1 transcript variant 2	NR_024629.1:n.	N/A	Intron Variant
IDI2-AS1 transcript variant 3	NR_027708.1:n.	N/A	Intron Variant
IDI2-AS1 transcript variant 4	NR_027709.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₂=	delTTT	delTT	delT	dupT	dupTT	dupTTT
GRCh38.p14 chr 10	NC_000010.11:g.1036005_1036016=	NC_000010.11:g.1036014_1036016del	NC_000010.11:g.1036015_1036016del	NC_000010.11:g.1036016del	NC_000010.11:g.1036016dup	NC_000010.11:g.1036015_1036016dup	NC_000010.11:g.1036014_1036016dup
GRCh37.p13 chr 10	NC_000010.10:g.1081945_1081956=	NC_000010.10:g.1081954_1081956del	NC_000010.10:g.1081955_1081956del	NC_000010.10:g.1081956del	NC_000010.10:g.1081956dup	NC_000010.10:g.1081955_1081956dup	NC_000010.10:g.1081954_1081956dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

49 SubSNP, 27 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss80944161	Dec 04, 2013 (138)
2	GMI	ss288991281	May 04, 2012 (137)
3	SSMP	ss663949924	Apr 01, 2015 (144)
4	SSIP	ss947250662	Aug 21, 2014 (142)
5	1000GENOMES	ss1368994474	Aug 21, 2014 (142)
6	EVA_UK10K_ALSPAC	ss1706604871	Apr 01, 2015 (144)
7	EVA_UK10K_TWINSUK	ss1706604957	Apr 01, 2015 (144)
8	EVA_EXAC	ss1711929607	Apr 01, 2015 (144)
9	EVA_EXAC	ss1711929608	Apr 01, 2015 (144)
10	EVA_EXAC	ss1711929609	Apr 01, 2015 (144)
11	EVA_EXAC	ss1711929610	Jan 10, 2018 (151)
12	EVA_EXAC	ss1711929611	Apr 01, 2015 (144)
13	SWEGEN	ss3005797718	Nov 08, 2017 (151)
14	MCHAISSO	ss3063636828	Nov 08, 2017 (151)
15	EVA_DECODE	ss3689112778	Jul 13, 2019 (153)
16	EVA_DECODE	ss3689112779	Jul 13, 2019 (153)
17	EVA_DECODE	ss3689112780	Jul 13, 2019 (153)
18	ACPOP	ss3736980747	Jul 13, 2019 (153)
19	PACBIO	ss3786555381	Jul 13, 2019 (153)
20	PACBIO	ss3791750241	Jul 13, 2019 (153)
21	PACBIO	ss3796631980	Jul 13, 2019 (153)
22	KHV_HUMAN_GENOMES	ss3813002596	Jul 13, 2019 (153)
23	EVA	ss3831920295	Apr 26, 2020 (154)
24	EVA	ss3839488664	Apr 26, 2020 (154)
25	EVA	ss3844954187	Apr 26, 2020 (154)
26	FSA-LAB	ss3983971360	Apr 26, 2021 (155)
27	FSA-LAB	ss3983971361	Apr 26, 2021 (155)
28	GNOMAD	ss4211560030	Apr 26, 2021 (155)
29	GNOMAD	ss4211560031	Apr 26, 2021 (155)
30	GNOMAD	ss4211560032	Apr 26, 2021 (155)
31	GNOMAD	ss4211560034	Apr 26, 2021 (155)
32	GNOMAD	ss4211560035	Apr 26, 2021 (155)
33	TOMMO_GENOMICS	ss5195890376	Apr 26, 2021 (155)
34	TOMMO_GENOMICS	ss5195890377	Apr 26, 2021 (155)
35	TOMMO_GENOMICS	ss5195890378	Apr 26, 2021 (155)
36	EVA	ss5237207257	Apr 26, 2021 (155)
37	1000G_HIGH_COVERAGE	ss5282627083	Oct 16, 2022 (156)
38	1000G_HIGH_COVERAGE	ss5282627084	Oct 16, 2022 (156)
39	1000G_HIGH_COVERAGE	ss5282627086	Oct 16, 2022 (156)
40	HUGCELL_USP	ss5478435542	Oct 16, 2022 (156)
41	HUGCELL_USP	ss5478435543	Oct 16, 2022 (156)
42	EVA	ss5624005945	Oct 16, 2022 (156)
43	TOMMO_GENOMICS	ss5740629826	Oct 16, 2022 (156)
44	TOMMO_GENOMICS	ss5740629827	Oct 16, 2022 (156)
45	TOMMO_GENOMICS	ss5740629828	Oct 16, 2022 (156)
46	EVA	ss5823855284	Oct 16, 2022 (156)
47	EVA	ss5849397431	Oct 16, 2022 (156)
48	EVA	ss5877406271	Oct 16, 2022 (156)
49	EVA	ss5939785607	Oct 16, 2022 (156)
50	1000Genomes	NC_000010.10 - 1081945	Oct 12, 2018 (152)
51	The Avon Longitudinal Study of Parents and Children	NC_000010.10 - 1081945	Oct 12, 2018 (152)
52	ExAC Submission ignored due to conflicting rows: Row 5301 (NC_000010.10:1081944:TT: 5/6588) Row 5302 (NC_000010.10:1081944:T: 436/6588) Row 5303 (NC_000010.10:1081944::T 2496/6588) Row 5304 (NC_000010.10:1081944::TT 159/6588) Row 5305 (NC_000010.10:1081944::TTT 5/6588)	-	Oct 12, 2018 (152)
53	ExAC Submission ignored due to conflicting rows: Row 5301 (NC_000010.10:1081944:TT: 5/6588) Row 5302 (NC_000010.10:1081944:T: 436/6588) Row 5303 (NC_000010.10:1081944::T 2496/6588) Row 5304 (NC_000010.10:1081944::TT 159/6588) Row 5305 (NC_000010.10:1081944::TTT 5/6588)	-	Oct 12, 2018 (152)
54	ExAC Submission ignored due to conflicting rows: Row 5301 (NC_000010.10:1081944:TT: 5/6588) Row 5302 (NC_000010.10:1081944:T: 436/6588) Row 5303 (NC_000010.10:1081944::T 2496/6588) Row 5304 (NC_000010.10:1081944::TT 159/6588) Row 5305 (NC_000010.10:1081944::TTT 5/6588)	-	Oct 12, 2018 (152)
55	ExAC Submission ignored due to conflicting rows: Row 5301 (NC_000010.10:1081944:TT: 5/6588) Row 5302 (NC_000010.10:1081944:T: 436/6588) Row 5303 (NC_000010.10:1081944::T 2496/6588) Row 5304 (NC_000010.10:1081944::TT 159/6588) Row 5305 (NC_000010.10:1081944::TTT 5/6588)	-	Oct 12, 2018 (152)
56	ExAC Submission ignored due to conflicting rows: Row 5301 (NC_000010.10:1081944:TT: 5/6588) Row 5302 (NC_000010.10:1081944:T: 436/6588) Row 5303 (NC_000010.10:1081944::T 2496/6588) Row 5304 (NC_000010.10:1081944::TT 159/6588) Row 5305 (NC_000010.10:1081944::TTT 5/6588)	-	Oct 12, 2018 (152)
57	gnomAD - Genomes Submission ignored due to conflicting rows: Row 341180175 (NC_000010.11:1036004::T 30580/133600) Row 341180176 (NC_000010.11:1036004::TT 38/133742) Row 341180177 (NC_000010.11:1036004::TTT 1/133762)...	-	Apr 26, 2021 (155)
58	gnomAD - Genomes Submission ignored due to conflicting rows: Row 341180175 (NC_000010.11:1036004::T 30580/133600) Row 341180176 (NC_000010.11:1036004::TT 38/133742) Row 341180177 (NC_000010.11:1036004::TTT 1/133762)...	-	Apr 26, 2021 (155)
59	gnomAD - Genomes Submission ignored due to conflicting rows: Row 341180175 (NC_000010.11:1036004::T 30580/133600) Row 341180176 (NC_000010.11:1036004::TT 38/133742) Row 341180177 (NC_000010.11:1036004::TTT 1/133762)...	-	Apr 26, 2021 (155)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 341180175 (NC_000010.11:1036004::T 30580/133600) Row 341180176 (NC_000010.11:1036004::TT 38/133742) Row 341180177 (NC_000010.11:1036004::TTT 1/133762)...	-	Apr 26, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 341180175 (NC_000010.11:1036004::T 30580/133600) Row 341180176 (NC_000010.11:1036004::TT 38/133742) Row 341180177 (NC_000010.11:1036004::TTT 1/133762)...	-	Apr 26, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 341180175 (NC_000010.11:1036004::T 30580/133600) Row 341180176 (NC_000010.11:1036004::TT 38/133742) Row 341180177 (NC_000010.11:1036004::TTT 1/133762)...	-	Apr 26, 2021 (155)
63	gnomAD - Exomes Submission ignored due to conflicting rows: Row 7269603 (NC_000010.10:1081944::T 24002/60000) Row 7269604 (NC_000010.10:1081944::TT 1414/60000) Row 7269605 (NC_000010.10:1081944::TTT 34/60000)...	-	Jul 13, 2019 (153)
64	gnomAD - Exomes Submission ignored due to conflicting rows: Row 7269603 (NC_000010.10:1081944::T 24002/60000) Row 7269604 (NC_000010.10:1081944::TT 1414/60000) Row 7269605 (NC_000010.10:1081944::TTT 34/60000)...	-	Jul 13, 2019 (153)
65	gnomAD - Exomes Submission ignored due to conflicting rows: Row 7269603 (NC_000010.10:1081944::T 24002/60000) Row 7269604 (NC_000010.10:1081944::TT 1414/60000) Row 7269605 (NC_000010.10:1081944::TTT 34/60000)...	-	Jul 13, 2019 (153)
66	gnomAD - Exomes Submission ignored due to conflicting rows: Row 7269603 (NC_000010.10:1081944::T 24002/60000) Row 7269604 (NC_000010.10:1081944::TT 1414/60000) Row 7269605 (NC_000010.10:1081944::TTT 34/60000)...	-	Jul 13, 2019 (153)
67	gnomAD - Exomes Submission ignored due to conflicting rows: Row 7269603 (NC_000010.10:1081944::T 24002/60000) Row 7269604 (NC_000010.10:1081944::TT 1414/60000) Row 7269605 (NC_000010.10:1081944::TTT 34/60000)...	-	Jul 13, 2019 (153)
68	Northern Sweden	NC_000010.10 - 1081945	Jul 13, 2019 (153)
69	8.3KJPN Submission ignored due to conflicting rows: Row 53859683 (NC_000010.10:1081944::T 4101/16758) Row 53859684 (NC_000010.10:1081944:T: 350/16758) Row 53859685 (NC_000010.10:1081944::TT 40/16758)	-	Apr 26, 2021 (155)
70	8.3KJPN Submission ignored due to conflicting rows: Row 53859683 (NC_000010.10:1081944::T 4101/16758) Row 53859684 (NC_000010.10:1081944:T: 350/16758) Row 53859685 (NC_000010.10:1081944::TT 40/16758)	-	Apr 26, 2021 (155)
71	8.3KJPN Submission ignored due to conflicting rows: Row 53859683 (NC_000010.10:1081944::T 4101/16758) Row 53859684 (NC_000010.10:1081944:T: 350/16758) Row 53859685 (NC_000010.10:1081944::TT 40/16758)	-	Apr 26, 2021 (155)
72	14KJPN Submission ignored due to conflicting rows: Row 74466930 (NC_000010.11:1036004::T 6956/28256) Row 74466931 (NC_000010.11:1036004:T: 588/28256) Row 74466932 (NC_000010.11:1036004::TT 65/28256)	-	Oct 16, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 74466930 (NC_000010.11:1036004::T 6956/28256) Row 74466931 (NC_000010.11:1036004:T: 588/28256) Row 74466932 (NC_000010.11:1036004::TT 65/28256)	-	Oct 16, 2022 (156)
74	14KJPN Submission ignored due to conflicting rows: Row 74466930 (NC_000010.11:1036004::T 6956/28256) Row 74466931 (NC_000010.11:1036004:T: 588/28256) Row 74466932 (NC_000010.11:1036004::TT 65/28256)	-	Oct 16, 2022 (156)
75	UK 10K study - Twins	NC_000010.10 - 1081945	Oct 12, 2018 (152)
76	ALFA	NC_000010.11 - 1036005	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs60883920	May 11, 2012 (137)
rs71745510	May 11, 2012 (137)
rs71960042	May 11, 2012 (137)
rs796984218	Nov 08, 2017 (151)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4211560035	NC_000010.11:1036004:TTT:	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTT	(self)
ss1711929610, ss3983971361	NC_000010.10:1081944:TT:	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTT	(self)
ss4211560034	NC_000010.11:1036004:TT:	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTT	(self)
1966810011	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTT	(self)
ss1711929607, ss3005797718, ss5195890377	NC_000010.10:1081944:T:	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3689112778, ss5282627084, ss5478435543, ss5740629827	NC_000010.11:1036004:T:	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
1966810011	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss288991281	NC_000010.9:1071956::T	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
48281997, 26825067, 10265612, 26825067, ss663949924, ss1368994474, ss1706604871, ss1706604957, ss1711929608, ss3736980747, ss3786555381, ss3791750241, ss3796631980, ss3831920295, ss3839488664, ss3983971360, ss5195890376, ss5624005945, ss5823855284, ss5939785607	NC_000010.10:1081944::T	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss947250662	NC_000010.10:1081945::T	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3063636828, ss3813002596, ss3844954187, ss4211560030, ss5237207257, ss5282627083, ss5478435542, ss5740629826, ss5849397431, ss5877406271	NC_000010.11:1036004::T	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
1966810011	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3689112779	NC_000010.11:1036005::T	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss80944161	NT_008705.16:1021956::T	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss1711929609, ss5195890378	NC_000010.10:1081944::TT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4211560031, ss5282627086, ss5740629828	NC_000010.11:1036004::TT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
1966810011	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3689112780	NC_000010.11:1036005::TT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss1711929611	NC_000010.10:1081944::TTT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4211560032	NC_000010.11:1036004::TTT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
1966810011	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000010.11:1036004:TTTTTTTTTTTT:… NC_000010.11:1036004:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs11396609

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs11396609