Name: rs11475966
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11475966

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr20:1549371-1549381 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delTT / delT / dupT / dupTT / dupT…
delTT / delT / dupT / dupTT / dupTTT / dup(T)₄ / ins(T)₁₅G(T)₁₃C(T)₁₅
Variation Type: Indel Insertion and Deletion
Frequency: delT=0.1190 (1049/8816, ALFA)
(T)₁₁=0.4161 (2084/5008, 1000G)
delT=0.2935 (1131/3854, ALSPAC) (+ 4 more)
delT=0.2958 (1097/3708, TWINSUK)
(T)₁₁=0.2303 (422/1832, Korea1K)
delT=0.305 (183/600, NorthernSweden)
delT=0.30 (12/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: SIRPD : Intron Variant
LOC105372499 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	8816	TTTTTTTTTTT=0.8802	TTTTTTTTT=0.0000, TTTTTTTTTT=0.1190, TTTTTTTTTTTT=0.0008, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000	0.790048	0.028175	0.181777	32
European	Sub	8066	TTTTTTTTTTT=0.8697	TTTTTTTTT=0.0000, TTTTTTTTTT=0.1294, TTTTTTTTTTTT=0.0009, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000	0.771485	0.030551	0.197963	32
African	Sub	314	TTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	4	TTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
African American	Sub	310	TTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	4	TTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
East Asian	Sub	2	TTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Other Asian	Sub	2	TTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	40	TTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	220	TTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	24	TTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	148	TTTTTTTTTTT=0.966	TTTTTTTTT=0.000, TTTTTTTTTT=0.034, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	0.945946	0.013514	0.040541	6

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	8816	(T)₁₁=0.8802	delTT=0.0000, delT=0.1190, dupT=0.0008, dupTT=0.0000, dupTTT=0.0000, dup(T)₄=0.0000
Allele Frequency Aggregator	European	Sub	8066	(T)₁₁=0.8697	delTT=0.0000, delT=0.1294, dupT=0.0009, dupTT=0.0000, dupTTT=0.0000, dup(T)₄=0.0000
Allele Frequency Aggregator	African	Sub	314	(T)₁₁=1.000	delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Latin American 2	Sub	220	(T)₁₁=1.000	delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Other	Sub	148	(T)₁₁=0.966	delTT=0.000, delT=0.034, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Latin American 1	Sub	40	(T)₁₁=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₄=0.00
Allele Frequency Aggregator	South Asian	Sub	24	(T)₁₁=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₄=0.00
Allele Frequency Aggregator	Asian	Sub	4	(T)₁₁=1.0	delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dupTTT=0.0, dup(T)₄=0.0
1000Genomes	Global	Study-wide	5008	(T)₁₁=0.4161	delT=0.5721, dupT=0.0118
1000Genomes	African	Sub	1322	(T)₁₁=0.2443	delT=0.7126, dupT=0.0431
1000Genomes	East Asian	Sub	1008	(T)₁₁=0.2361	delT=0.7639, dupT=0.0000
1000Genomes	Europe	Sub	1006	(T)₁₁=0.6531	delT=0.3469, dupT=0.0000
1000Genomes	South Asian	Sub	978	(T)₁₁=0.479	delT=0.521, dupT=0.000
1000Genomes	American	Sub	694	(T)₁₁=0.573	delT=0.424, dupT=0.003
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	(T)₁₁=0.7065	delT=0.2935
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	(T)₁₁=0.7042	delT=0.2958
Korean Genome Project	KOREAN	Study-wide	1832	(T)₁₁=0.2303	delT=0.7697
Northern Sweden	ACPOP	Study-wide	600	(T)₁₁=0.695	delT=0.305
The Danish reference pan genome	Danish	Study-wide	40	(T)₁₁=0.70	delT=0.30

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 20	NC_000020.11:g.1549380_1549381del
GRCh38.p14 chr 20	NC_000020.11:g.1549381del
GRCh38.p14 chr 20	NC_000020.11:g.1549381dup
GRCh38.p14 chr 20	NC_000020.11:g.1549380_1549381dup
GRCh38.p14 chr 20	NC_000020.11:g.1549379_1549381dup
GRCh38.p14 chr 20	NC_000020.11:g.1549378_1549381dup
GRCh38.p14 chr 20	NC_000020.11:g.1549371_1549381T[26]GTTTTTTTTTTTTTCTTTTTTTTTTTTTTT[1]
GRCh37.p13 chr 20	NC_000020.10:g.1530026_1530027del
GRCh37.p13 chr 20	NC_000020.10:g.1530027del
GRCh37.p13 chr 20	NC_000020.10:g.1530027dup
GRCh37.p13 chr 20	NC_000020.10:g.1530026_1530027dup
GRCh37.p13 chr 20	NC_000020.10:g.1530025_1530027dup
GRCh37.p13 chr 20	NC_000020.10:g.1530024_1530027dup
GRCh37.p13 chr 20	NC_000020.10:g.1530017_1530027T[26]GTTTTTTTTTTTTTCTTTTTTTTTTTTTTT[1]

Gene: SIRPD, signal regulatory protein delta (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
SIRPD transcript variant 1	NM_178460.3:c.421+2319_42… NM_178460.3:c.421+2319_421+2320del	N/A	Intron Variant
SIRPD transcript variant X1	XM_047439883.1:c.421+2319… XM_047439883.1:c.421+2319_421+2320del	N/A	Intron Variant
SIRPD transcript variant X2	XM_047439884.1:c.421+2319… XM_047439884.1:c.421+2319_421+2320del	N/A	Intron Variant
SIRPD transcript variant X3	XM_047439886.1:c.421+2319… XM_047439886.1:c.421+2319_421+2320del	N/A	Intron Variant
SIRPD transcript variant X4	XM_047439887.1:c.313+2319… XM_047439887.1:c.313+2319_313+2320del	N/A	Intron Variant
SIRPD transcript variant X2	XM_047439885.1:c.73_83=	N/A	3 Prime UTR Variant
SIRPD transcript variant X5	XM_047439888.1:c.	N/A	Genic Downstream Transcript Variant

Gene: LOC105372499, uncharacterized LOC105372499 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105372499 transcript	XR_001754464.2:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₁=	delTT	delT	dupT	dupTT	dupTTT	dup(T)₄	ins(T)₁₅G(T)₁₃C(T)₁₅
GRCh38.p14 chr 20	NC_000020.11:g.1549371_1549381=	NC_000020.11:g.1549380_1549381del	NC_000020.11:g.1549381del	NC_000020.11:g.1549381dup	NC_000020.11:g.1549380_1549381dup	NC_000020.11:g.1549379_1549381dup	NC_000020.11:g.1549378_1549381dup	NC_000020.11:g.1549371_1549381T[26]GTTTTTTTTTTTTTCTTTTTTTTTTTTTTT[1]
GRCh37.p13 chr 20	NC_000020.10:g.1530017_1530027=	NC_000020.10:g.1530026_1530027del	NC_000020.10:g.1530027del	NC_000020.10:g.1530027dup	NC_000020.10:g.1530026_1530027dup	NC_000020.10:g.1530025_1530027dup	NC_000020.10:g.1530024_1530027dup	NC_000020.10:g.1530017_1530027T[26]GTTTTTTTTTTTTTCTTTTTTTTTTTTTTT[1]
SIRPD transcript variant X2	XM_047439885.1:c.73_83=	XM_047439885.1:c.82_83del	XM_047439885.1:c.*83del	XM_047439885.1:c.*83dup	XM_047439885.1:c.82_83dup	XM_047439885.1:c.81_83dup	XM_047439885.1:c.80_83dup	XM_047439885.1:c.73_83A[15]GAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA[1]
SIRPD transcript	NM_178460.2:c.421+2320=	NM_178460.2:c.421+2319_421+2320del	NM_178460.2:c.421+2320del	NM_178460.2:c.421+2320dup	NM_178460.2:c.421+2319_421+2320dup	NM_178460.2:c.421+2318_421+2320dup	NM_178460.2:c.421+2317_421+2320dup	NM_178460.2:c.421+2320_421+2321insAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAA
SIRPD transcript variant 1	NM_178460.3:c.421+2320=	NM_178460.3:c.421+2319_421+2320del	NM_178460.3:c.421+2320del	NM_178460.3:c.421+2320dup	NM_178460.3:c.421+2319_421+2320dup	NM_178460.3:c.421+2318_421+2320dup	NM_178460.3:c.421+2317_421+2320dup	NM_178460.3:c.421+2320_421+2321insAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAA
SIRPD transcript variant X1	XM_005260662.1:c.421+2320=	XM_005260662.1:c.421+2319_421+2320del	XM_005260662.1:c.421+2320del	XM_005260662.1:c.421+2320dup	XM_005260662.1:c.421+2319_421+2320dup	XM_005260662.1:c.421+2318_421+2320dup	XM_005260662.1:c.421+2317_421+2320dup	XM_005260662.1:c.421+2320_421+2321insAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAA
SIRPD transcript variant X1	XM_047439883.1:c.421+2320=	XM_047439883.1:c.421+2319_421+2320del	XM_047439883.1:c.421+2320del	XM_047439883.1:c.421+2320dup	XM_047439883.1:c.421+2319_421+2320dup	XM_047439883.1:c.421+2318_421+2320dup	XM_047439883.1:c.421+2317_421+2320dup	XM_047439883.1:c.421+2320_421+2321insAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAA
SIRPD transcript variant X2	XM_047439884.1:c.421+2320=	XM_047439884.1:c.421+2319_421+2320del	XM_047439884.1:c.421+2320del	XM_047439884.1:c.421+2320dup	XM_047439884.1:c.421+2319_421+2320dup	XM_047439884.1:c.421+2318_421+2320dup	XM_047439884.1:c.421+2317_421+2320dup	XM_047439884.1:c.421+2320_421+2321insAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAA
SIRPD transcript variant X3	XM_047439886.1:c.421+2320=	XM_047439886.1:c.421+2319_421+2320del	XM_047439886.1:c.421+2320del	XM_047439886.1:c.421+2320dup	XM_047439886.1:c.421+2319_421+2320dup	XM_047439886.1:c.421+2318_421+2320dup	XM_047439886.1:c.421+2317_421+2320dup	XM_047439886.1:c.421+2320_421+2321insAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAA
SIRPD transcript variant X4	XM_047439887.1:c.313+2320=	XM_047439887.1:c.313+2319_313+2320del	XM_047439887.1:c.313+2320del	XM_047439887.1:c.313+2320dup	XM_047439887.1:c.313+2319_313+2320dup	XM_047439887.1:c.313+2318_313+2320dup	XM_047439887.1:c.313+2317_313+2320dup	XM_047439887.1:c.313+2320_313+2321insAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAA

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

57 SubSNP, 18 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss79952393	Sep 08, 2015 (146)
2	HGSV	ss79983797	Sep 08, 2015 (146)
3	HGSV	ss80011423	Sep 08, 2015 (146)
4	HGSV	ss81077340	Sep 08, 2015 (146)
5	HGSV	ss81530652	Sep 08, 2015 (146)
6	HGSV	ss82822442	Dec 14, 2007 (129)
7	HGSV	ss82999110	Dec 14, 2007 (129)
8	BCMHGSC_JDW	ss103646826	Apr 25, 2013 (138)
9	BUSHMAN	ss193599861	Jul 04, 2010 (137)
10	GMI	ss288530211	May 09, 2011 (137)
11	GMI	ss289397916	May 04, 2012 (137)
12	PJP	ss295035140	May 09, 2011 (137)
13	PJP	ss295035141	May 09, 2011 (134)
14	SSMP	ss664463434	Apr 01, 2015 (144)
15	BILGI_BIOE	ss666737514	Apr 25, 2013 (138)
16	1000GENOMES	ss1378310214	Aug 21, 2014 (142)
17	1000GENOMES	ss1378310215	Aug 21, 2014 (142)
18	DDI	ss1536899550	Apr 01, 2015 (144)
19	EVA_GENOME_DK	ss1575662676	Apr 01, 2015 (144)
20	EVA_UK10K_ALSPAC	ss1709270251	Apr 01, 2015 (144)
21	EVA_UK10K_TWINSUK	ss1709270390	Apr 01, 2015 (144)
22	HAMMER_LAB	ss1809389672	Sep 08, 2015 (146)
23	JJLAB	ss2031417372	Sep 14, 2016 (149)
24	SYSTEMSBIOZJU	ss2629379895	Nov 08, 2017 (151)
25	SWEGEN	ss3017762399	Nov 08, 2017 (151)
26	MCHAISSO	ss3063987373	Nov 08, 2017 (151)
27	BIOINF_KMB_FNS_UNIBA	ss3645625129	Oct 12, 2018 (152)
28	EVA_DECODE	ss3706428792	Jul 13, 2019 (153)
29	EVA_DECODE	ss3706428793	Jul 13, 2019 (153)
30	ACPOP	ss3743189971	Jul 13, 2019 (153)
31	PACBIO	ss3788580166	Jul 13, 2019 (153)
32	PACBIO	ss3793483290	Jul 13, 2019 (153)
33	PACBIO	ss3798370440	Jul 13, 2019 (153)
34	KHV_HUMAN_GENOMES	ss3821513474	Jul 13, 2019 (153)
35	KHV_HUMAN_GENOMES	ss3821513475	Jul 13, 2019 (153)
36	EVA	ss3835551733	Apr 27, 2020 (154)
37	KOGIC	ss3981701243	Apr 27, 2020 (154)
38	GNOMAD	ss4333998977	Apr 27, 2021 (155)
39	GNOMAD	ss4333998978	Apr 27, 2021 (155)
40	GNOMAD	ss4333998979	Apr 27, 2021 (155)
41	GNOMAD	ss4333998980	Apr 27, 2021 (155)
42	GNOMAD	ss4333998981	Apr 27, 2021 (155)
43	GNOMAD	ss4333998982	Apr 27, 2021 (155)
44	TOMMO_GENOMICS	ss5228554696	Apr 27, 2021 (155)
45	TOMMO_GENOMICS	ss5228554697	Apr 27, 2021 (155)
46	1000G_HIGH_COVERAGE	ss5307859818	Oct 13, 2022 (156)
47	1000G_HIGH_COVERAGE	ss5307859819	Oct 13, 2022 (156)
48	1000G_HIGH_COVERAGE	ss5307859820	Oct 13, 2022 (156)
49	1000G_HIGH_COVERAGE	ss5307859821	Oct 13, 2022 (156)
50	HUGCELL_USP	ss5500282102	Oct 13, 2022 (156)
51	HUGCELL_USP	ss5500282103	Oct 13, 2022 (156)
52	TOMMO_GENOMICS	ss5787460983	Oct 13, 2022 (156)
53	TOMMO_GENOMICS	ss5787460984	Oct 13, 2022 (156)
54	YY_MCH	ss5817759053	Oct 13, 2022 (156)
55	EVA	ss5845353499	Oct 13, 2022 (156)
56	EVA	ss5853039391	Oct 13, 2022 (156)
57	EVA	ss5957630991	Oct 13, 2022 (156)
58	1000Genomes	NC_000020.10 - 1530017	Oct 12, 2018 (152)
59	The Avon Longitudinal Study of Parents and Children	NC_000020.10 - 1530017	Oct 12, 2018 (152)
60	The Danish reference pan genome	NC_000020.10 - 1530017	Apr 27, 2020 (154)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 544683101 (NC_000020.11:1549370::T 109/135494) Row 544683102 (NC_000020.11:1549370::TT 1/135536) Row 544683103 (NC_000020.11:1549370::TTT 1299/135502)...	-	Apr 27, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 544683101 (NC_000020.11:1549370::T 109/135494) Row 544683102 (NC_000020.11:1549370::TT 1/135536) Row 544683103 (NC_000020.11:1549370::TTT 1299/135502)...	-	Apr 27, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 544683101 (NC_000020.11:1549370::T 109/135494) Row 544683102 (NC_000020.11:1549370::TT 1/135536) Row 544683103 (NC_000020.11:1549370::TTT 1299/135502)...	-	Apr 27, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 544683101 (NC_000020.11:1549370::T 109/135494) Row 544683102 (NC_000020.11:1549370::TT 1/135536) Row 544683103 (NC_000020.11:1549370::TTT 1299/135502)...	-	Apr 27, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 544683101 (NC_000020.11:1549370::T 109/135494) Row 544683102 (NC_000020.11:1549370::TT 1/135536) Row 544683103 (NC_000020.11:1549370::TTT 1299/135502)...	-	Apr 27, 2021 (155)
66	gnomAD - Genomes Submission ignored due to conflicting rows: Row 544683101 (NC_000020.11:1549370::T 109/135494) Row 544683102 (NC_000020.11:1549370::TT 1/135536) Row 544683103 (NC_000020.11:1549370::TTT 1299/135502)...	-	Apr 27, 2021 (155)
67	gnomAD - Genomes Submission ignored due to conflicting rows: Row 544683101 (NC_000020.11:1549370::T 109/135494) Row 544683102 (NC_000020.11:1549370::TT 1/135536) Row 544683103 (NC_000020.11:1549370::TTT 1299/135502)...	-	Apr 27, 2021 (155)
68	Korean Genome Project	NC_000020.11 - 1549371	Apr 27, 2020 (154)
69	Northern Sweden	NC_000020.10 - 1530017	Jul 13, 2019 (153)
70	8.3KJPN Submission ignored due to conflicting rows: Row 86524003 (NC_000020.10:1530016:T: 12220/16760) Row 86524004 (NC_000020.10:1530016::T 1/16760)	-	Apr 27, 2021 (155)
71	8.3KJPN Submission ignored due to conflicting rows: Row 86524003 (NC_000020.10:1530016:T: 12220/16760) Row 86524004 (NC_000020.10:1530016::T 1/16760)	-	Apr 27, 2021 (155)
72	14KJPN Submission ignored due to conflicting rows: Row 121298087 (NC_000020.11:1549370:T: 20631/28258) Row 121298088 (NC_000020.11:1549370::T 2/28258)	-	Oct 13, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 121298087 (NC_000020.11:1549370:T: 20631/28258) Row 121298088 (NC_000020.11:1549370::T 2/28258)	-	Oct 13, 2022 (156)
74	UK 10K study - Twins	NC_000020.10 - 1530017	Oct 12, 2018 (152)
75	ALFA	NC_000020.11 - 1549371	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs34932936	May 23, 2006 (127)
rs61458470	May 26, 2008 (130)
rs72425797	May 11, 2012 (137)
rs374974551	May 13, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4333998982, ss5307859820	NC_000020.11:1549370:TT:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTT	(self)
3178580324	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTT	(self)
ss103646826	NT_011387.8:1470025:TT:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTT	(self)
ss289397916, ss295035140	NC_000020.9:1478016:T:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	(self)
ss79952393, ss79983797, ss80011423, ss81077340, ss81530652, ss295035141	NC_000020.9:1478026:T:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	(self)
77240423, 42752431, 744870, 16474836, 42752431, ss664463434, ss666737514, ss1378310214, ss1536899550, ss1575662676, ss1709270251, ss1709270390, ss1809389672, ss2031417372, ss2629379895, ss3017762399, ss3743189971, ss3788580166, ss3793483290, ss3798370440, ss3835551733, ss5228554696, ss5845353499, ss5957630991	NC_000020.10:1530016:T:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	(self)
38079244, ss3063987373, ss3645625129, ss3706428792, ss3821513475, ss3981701243, ss5307859818, ss5500282102, ss5787460983, ss5817759053, ss5853039391	NC_000020.11:1549370:T:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	(self)
3178580324	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	(self)
ss288530211	NT_011387.8:1470016:T:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	(self)
ss193599861	NT_011387.9:1489370:T:	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTT	(self)
ss5228554697	NC_000020.10:1530016::T	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTT	(self)
77240423	NC_000020.10:1530016:T:TT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss4333998977, ss5307859821, ss5787460984	NC_000020.11:1549370::T	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTT	(self)
3178580324	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3706428793	NC_000020.11:1549371::T	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss4333998978	NC_000020.11:1549370::TT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTT	(self)
3178580324	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss1378310215	NC_000020.10:1530017::TTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4333998979, ss5307859819, ss5500282103	NC_000020.11:1549370::TTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
3178580324	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3821513474	NC_000020.11:1549371::TTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss82822442, ss82999110	NT_011387.8:1470027::TTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4333998980	NC_000020.11:1549370::TTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
3178580324	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4333998981	NC_000020.11:1549370::TTTTTTTTTTTT… NC_000020.11:1549370::TTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTT	NC_000020.11:1549370:TTTTTTTTTTT:T… NC_000020.11:1549370:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs11475966

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs11475966