Name: rs138662921
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs138662921

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr2:202938660-202938669 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delTT / delT / dupT
Variation Type: Indel Insertion and Deletion
Frequency: delT=0.3750 (2636/7030, ALFA)
delT=0.4659 (2333/5008, 1000G)
(T)₁₀=0.3293 (1269/3854, ALSPAC) (+ 4 more)
(T)₁₀=0.3341 (1239/3708, TWINSUK)
(T)₁₀=0.366 (365/998, GoNL)
(T)₁₀=0.453 (270/596, NorthernSweden)
(T)₁₀=0.38 (15/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: CARF : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	7030	TTTTTTTTTT=0.6250	TTTTTTTT=0.0000, TTTTTTTTT=0.3750, TTTTTTTTTTT=0.0000	0.474538	0.224467	0.300996	32
European	Sub	5386	TTTTTTTTTT=0.5115	TTTTTTTT=0.0000, TTTTTTTTT=0.4885, TTTTTTTTTTT=0.0000	0.315633	0.29261	0.391756	32
African	Sub	1268	TTTTTTTTTT=1.0000	TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	60	TTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	1208	TTTTTTTTTT=1.0000	TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	40	TTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	32	TTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	8	TTTTTTTTTT=1.0	TTTTTTTT=0.0, TTTTTTTTT=0.0, TTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	24	TTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	180	TTTTTTTTTT=1.000	TTTTTTTT=0.000, TTTTTTTTT=0.000, TTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	12	TTTTTTTTTT=1.00	TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	120	TTTTTTTTTT=0.958	TTTTTTTT=0.000, TTTTTTTTT=0.042, TTTTTTTTTTT=0.000	0.933333	0.016667	0.05	5

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	7030	(T)₁₀=0.6250	delTT=0.0000, delT=0.3750, dupT=0.0000
Allele Frequency Aggregator	European	Sub	5386	(T)₁₀=0.5115	delTT=0.0000, delT=0.4885, dupT=0.0000
Allele Frequency Aggregator	African	Sub	1268	(T)₁₀=1.0000	delTT=0.0000, delT=0.0000, dupT=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	180	(T)₁₀=1.000	delTT=0.000, delT=0.000, dupT=0.000
Allele Frequency Aggregator	Other	Sub	120	(T)₁₀=0.958	delTT=0.000, delT=0.042, dupT=0.000
Allele Frequency Aggregator	Asian	Sub	40	(T)₁₀=1.00	delTT=0.00, delT=0.00, dupT=0.00
Allele Frequency Aggregator	Latin American 1	Sub	24	(T)₁₀=1.00	delTT=0.00, delT=0.00, dupT=0.00
Allele Frequency Aggregator	South Asian	Sub	12	(T)₁₀=1.00	delTT=0.00, delT=0.00, dupT=0.00
1000Genomes	Global	Study-wide	5008	(T)₁₀=0.5341	delT=0.4659
1000Genomes	African	Sub	1322	(T)₁₀=0.7141	delT=0.2859
1000Genomes	East Asian	Sub	1008	(T)₁₀=0.6587	delT=0.3413
1000Genomes	Europe	Sub	1006	(T)₁₀=0.3449	delT=0.6551
1000Genomes	South Asian	Sub	978	(T)₁₀=0.365	delT=0.635
1000Genomes	American	Sub	694	(T)₁₀=0.523	delT=0.477
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	(T)₁₀=0.3293	delT=0.6707
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	(T)₁₀=0.3341	delT=0.6659
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	(T)₁₀=0.366	delT=0.634
Northern Sweden	ACPOP	Study-wide	596	(T)₁₀=0.453	delT=0.547
The Danish reference pan genome	Danish	Study-wide	40	(T)₁₀=0.38	delT=0.62

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 2	NC_000002.12:g.202938668_202938669del
GRCh38.p14 chr 2	NC_000002.12:g.202938669del
GRCh38.p14 chr 2	NC_000002.12:g.202938669dup
GRCh37.p13 chr 2	NC_000002.11:g.203803391_203803392del
GRCh37.p13 chr 2	NC_000002.11:g.203803392del
GRCh37.p13 chr 2	NC_000002.11:g.203803392dup

Gene: CARF, calcium responsive transcription factor (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CARF transcript variant 1	NM_001104586.4:c.-43-3192… NM_001104586.4:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant 3	NM_001282910.3:c.-43-3192… NM_001282910.3:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant 4	NM_001282911.3:c.-43-3192… NM_001282911.3:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant 5	NM_001282912.3:c.43-13891… NM_001282912.3:c.43-13891_43-13890del	N/A	Intron Variant
CARF transcript variant 6	NM_001322427.3:c.-43-3192… NM_001322427.3:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant 7	NM_001322428.3:c.-43-3192… NM_001322428.3:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant 8	NM_001322429.3:c.43-4072_… NM_001322429.3:c.43-4072_43-4071del	N/A	Intron Variant
CARF transcript variant 14	NM_001352676.2:c.-350-319… NM_001352676.2:c.-350-3192_-350-3191del	N/A	Intron Variant
CARF transcript variant 15	NM_001352677.2:c.1-13891_… NM_001352677.2:c.1-13891_1-13890del	N/A	Intron Variant
CARF transcript variant 16	NM_001352678.2:c.-764-319… NM_001352678.2:c.-764-3192_-764-3191del	N/A	Intron Variant
CARF transcript variant 17	NM_001352679.2:c.-703-319… NM_001352679.2:c.-703-3192_-703-3191del	N/A	Intron Variant
CARF transcript variant 2	NM_024744.17:c.-43-3192_-… NM_024744.17:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant 10	NR_136330.3:n.	N/A	Intron Variant
CARF transcript variant 11	NR_136331.3:n.	N/A	Intron Variant
CARF transcript variant 12	NR_148033.2:n.	N/A	Intron Variant
CARF transcript variant 13	NR_148034.2:n.	N/A	Intron Variant
CARF transcript variant X2	XM_047445855.1:c.-43-3192… XM_047445855.1:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant X4	XM_047445856.1:c.-43-3192… XM_047445856.1:c.-43-3192_-43-3191del	N/A	Intron Variant
CARF transcript variant X1	XR_007081622.1:n.	N/A	Intron Variant
CARF transcript variant X3	XR_007081643.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₀=	delTT	delT	dupT
GRCh38.p14 chr 2	NC_000002.12:g.202938660_202938669=	NC_000002.12:g.202938668_202938669del	NC_000002.12:g.202938669del	NC_000002.12:g.202938669dup
GRCh37.p13 chr 2	NC_000002.11:g.203803383_203803392=	NC_000002.11:g.203803391_203803392del	NC_000002.11:g.203803392del	NC_000002.11:g.203803392dup
CARF transcript	NM_001104586.1:c.-43-3200=	NM_001104586.1:c.-43-3192_-43-3191del	NM_001104586.1:c.-43-3191del	NM_001104586.1:c.-43-3191dup
CARF transcript variant 1	NM_001104586.4:c.-43-3200=	NM_001104586.4:c.-43-3192_-43-3191del	NM_001104586.4:c.-43-3191del	NM_001104586.4:c.-43-3191dup
CARF transcript variant 3	NM_001282910.3:c.-43-3200=	NM_001282910.3:c.-43-3192_-43-3191del	NM_001282910.3:c.-43-3191del	NM_001282910.3:c.-43-3191dup
CARF transcript variant 4	NM_001282911.3:c.-43-3200=	NM_001282911.3:c.-43-3192_-43-3191del	NM_001282911.3:c.-43-3191del	NM_001282911.3:c.-43-3191dup
CARF transcript variant 5	NM_001282912.3:c.43-13899=	NM_001282912.3:c.43-13891_43-13890del	NM_001282912.3:c.43-13890del	NM_001282912.3:c.43-13890dup
CARF transcript variant 6	NM_001322427.3:c.-43-3200=	NM_001322427.3:c.-43-3192_-43-3191del	NM_001322427.3:c.-43-3191del	NM_001322427.3:c.-43-3191dup
CARF transcript variant 7	NM_001322428.3:c.-43-3200=	NM_001322428.3:c.-43-3192_-43-3191del	NM_001322428.3:c.-43-3191del	NM_001322428.3:c.-43-3191dup
CARF transcript variant 8	NM_001322429.3:c.43-4080=	NM_001322429.3:c.43-4072_43-4071del	NM_001322429.3:c.43-4071del	NM_001322429.3:c.43-4071dup
CARF transcript variant 14	NM_001352676.2:c.-350-3200=	NM_001352676.2:c.-350-3192_-350-3191del	NM_001352676.2:c.-350-3191del	NM_001352676.2:c.-350-3191dup
CARF transcript variant 15	NM_001352677.2:c.1-13899=	NM_001352677.2:c.1-13891_1-13890del	NM_001352677.2:c.1-13890del	NM_001352677.2:c.1-13890dup
CARF transcript variant 16	NM_001352678.2:c.-764-3200=	NM_001352678.2:c.-764-3192_-764-3191del	NM_001352678.2:c.-764-3191del	NM_001352678.2:c.-764-3191dup
CARF transcript variant 17	NM_001352679.2:c.-703-3200=	NM_001352679.2:c.-703-3192_-703-3191del	NM_001352679.2:c.-703-3191del	NM_001352679.2:c.-703-3191dup
CARF transcript	NM_024744.14:c.-43-3200=	NM_024744.14:c.-43-3192_-43-3191del	NM_024744.14:c.-43-3191del	NM_024744.14:c.-43-3191dup
CARF transcript variant 2	NM_024744.17:c.-43-3200=	NM_024744.17:c.-43-3192_-43-3191del	NM_024744.17:c.-43-3191del	NM_024744.17:c.-43-3191dup
CARF transcript variant X1	XM_005246858.1:c.-43-3200=	XM_005246858.1:c.-43-3192_-43-3191del	XM_005246858.1:c.-43-3191del	XM_005246858.1:c.-43-3191dup
CARF transcript variant X2	XM_005246859.1:c.-43-3200=	XM_005246859.1:c.-43-3192_-43-3191del	XM_005246859.1:c.-43-3191del	XM_005246859.1:c.-43-3191dup
CARF transcript variant X4	XM_005246861.1:c.-43-3200=	XM_005246861.1:c.-43-3192_-43-3191del	XM_005246861.1:c.-43-3191del	XM_005246861.1:c.-43-3191dup
CARF transcript variant X5	XM_005246862.1:c.-43-3200=	XM_005246862.1:c.-43-3192_-43-3191del	XM_005246862.1:c.-43-3191del	XM_005246862.1:c.-43-3191dup
CARF transcript variant X6	XM_005246863.1:c.-43-3200=	XM_005246863.1:c.-43-3192_-43-3191del	XM_005246863.1:c.-43-3191del	XM_005246863.1:c.-43-3191dup
CARF transcript variant X2	XM_047445855.1:c.-43-3200=	XM_047445855.1:c.-43-3192_-43-3191del	XM_047445855.1:c.-43-3191del	XM_047445855.1:c.-43-3191dup
CARF transcript variant X4	XM_047445856.1:c.-43-3200=	XM_047445856.1:c.-43-3192_-43-3191del	XM_047445856.1:c.-43-3191del	XM_047445856.1:c.-43-3191dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

48 SubSNP, 15 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	GMI	ss288278972	May 04, 2012 (137)
2	1000GENOMES	ss326300055	May 09, 2011 (134)
3	1000GENOMES	ss326318355	May 09, 2011 (134)
4	1000GENOMES	ss326411032	May 09, 2011 (134)
5	LUNTER	ss551169369	Apr 25, 2013 (138)
6	LUNTER	ss551238308	Apr 25, 2013 (138)
7	LUNTER	ss552970738	Apr 25, 2013 (138)
8	SSMP	ss663276034	Apr 01, 2015 (144)
9	BILGI_BIOE	ss666183857	Apr 25, 2013 (138)
10	EVA-GONL	ss977859648	Aug 21, 2014 (142)
11	1000GENOMES	ss1369465216	Aug 21, 2014 (142)
12	DDI	ss1536326245	Apr 01, 2015 (144)
13	EVA_GENOME_DK	ss1575604257	Apr 01, 2015 (144)
14	EVA_UK10K_TWINSUK	ss1703366654	Apr 01, 2015 (144)
15	EVA_UK10K_ALSPAC	ss1703366656	Apr 01, 2015 (144)
16	HAMMER_LAB	ss1798208673	Sep 08, 2015 (146)
17	JJLAB	ss2030472644	Sep 14, 2016 (149)
18	SYSTEMSBIOZJU	ss2625050544	Nov 08, 2017 (151)
19	SWEGEN	ss2991202890	Nov 08, 2017 (151)
20	MCHAISSO	ss3063975224	Nov 08, 2017 (151)
21	MCHAISSO	ss3064829873	Nov 08, 2017 (151)
22	BEROUKHIMLAB	ss3644111476	Oct 11, 2018 (152)
23	EVA_DECODE	ss3705835091	Jul 13, 2019 (153)
24	EVA_DECODE	ss3705835092	Jul 13, 2019 (153)
25	ACPOP	ss3729288244	Jul 13, 2019 (153)
26	PACBIO	ss3784126527	Jul 13, 2019 (153)
27	PACBIO	ss3789668735	Jul 13, 2019 (153)
28	PACBIO	ss3794541908	Jul 13, 2019 (153)
29	KHV_HUMAN_GENOMES	ss3802329212	Jul 13, 2019 (153)
30	EVA	ss3827456704	Apr 25, 2020 (154)
31	EVA	ss3837147574	Apr 25, 2020 (154)
32	EVA	ss3842568800	Apr 25, 2020 (154)
33	KOGIC	ss3949900232	Apr 25, 2020 (154)
34	KOGIC	ss3949900233	Apr 25, 2020 (154)
35	GNOMAD	ss4059395816	Apr 27, 2021 (155)
36	GNOMAD	ss4059395818	Apr 27, 2021 (155)
37	TOMMO_GENOMICS	ss5156069189	Apr 27, 2021 (155)
38	TOMMO_GENOMICS	ss5156069190	Apr 27, 2021 (155)
39	1000G_HIGH_COVERAGE	ss5251699133	Oct 12, 2022 (156)
40	1000G_HIGH_COVERAGE	ss5251699135	Oct 12, 2022 (156)
41	HUGCELL_USP	ss5451344533	Oct 12, 2022 (156)
42	TOMMO_GENOMICS	ss5686828338	Oct 12, 2022 (156)
43	TOMMO_GENOMICS	ss5686828339	Oct 12, 2022 (156)
44	YY_MCH	ss5803143527	Oct 12, 2022 (156)
45	EVA	ss5821459293	Oct 12, 2022 (156)
46	EVA	ss5852914663	Oct 12, 2022 (156)
47	EVA	ss5934321929	Oct 12, 2022 (156)
48	EVA	ss5957010600	Oct 12, 2022 (156)
49	1000Genomes	NC_000002.11 - 203803383	Oct 11, 2018 (152)
50	The Avon Longitudinal Study of Parents and Children	NC_000002.11 - 203803383	Oct 11, 2018 (152)
51	The Danish reference pan genome	NC_000002.11 - 203803383	Apr 25, 2020 (154)
52	gnomAD - Genomes Submission ignored due to conflicting rows: Row 88117356 (NC_000002.12:202938659::T 124/126818) Row 88117358 (NC_000002.12:202938659:T: 67491/126710)	-	Apr 27, 2021 (155)
53	gnomAD - Genomes Submission ignored due to conflicting rows: Row 88117356 (NC_000002.12:202938659::T 124/126818) Row 88117358 (NC_000002.12:202938659:T: 67491/126710)	-	Apr 27, 2021 (155)
54	Genome of the Netherlands Release 5	NC_000002.11 - 203803383	Apr 25, 2020 (154)
55	Korean Genome Project Submission ignored due to conflicting rows: Row 6278233 (NC_000002.12:202938659:T: 493/1832) Row 6278234 (NC_000002.12:202938660::T 9/1832)	-	Apr 25, 2020 (154)
56	Korean Genome Project Submission ignored due to conflicting rows: Row 6278233 (NC_000002.12:202938659:T: 493/1832) Row 6278234 (NC_000002.12:202938660::T 9/1832)	-	Apr 25, 2020 (154)
57	Northern Sweden	NC_000002.11 - 203803383	Jul 13, 2019 (153)
58	8.3KJPN Submission ignored due to conflicting rows: Row 14038496 (NC_000002.11:203803382:T: 4358/16754) Row 14038497 (NC_000002.11:203803382::T 144/16754)	-	Apr 27, 2021 (155)
59	8.3KJPN Submission ignored due to conflicting rows: Row 14038496 (NC_000002.11:203803382:T: 4358/16754) Row 14038497 (NC_000002.11:203803382::T 144/16754)	-	Apr 27, 2021 (155)
60	14KJPN Submission ignored due to conflicting rows: Row 20665442 (NC_000002.12:202938659:T: 6995/28068) Row 20665443 (NC_000002.12:202938659::T 213/28068)	-	Oct 12, 2022 (156)
61	14KJPN Submission ignored due to conflicting rows: Row 20665442 (NC_000002.12:202938659:T: 6995/28068) Row 20665443 (NC_000002.12:202938659::T 213/28068)	-	Oct 12, 2022 (156)
62	UK 10K study - Twins	NC_000002.11 - 203803383	Oct 11, 2018 (152)
63	ALFA	NC_000002.12 - 202938660	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
1059015760	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTT	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTT	(self)
ss288278972, ss326300055, ss326318355, ss326411032, ss551169369, ss551238308, ss552970738	NC_000002.10:203511627:T:	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTT	(self)
12353928, 6825664, 726871, 2994505, 2573109, 6825664, ss663276034, ss666183857, ss977859648, ss1369465216, ss1536326245, ss1575604257, ss1703366654, ss1703366656, ss1798208673, ss2030472644, ss2625050544, ss2991202890, ss3644111476, ss3729288244, ss3784126527, ss3789668735, ss3794541908, ss3827456704, ss3837147574, ss5156069189, ss5821459293, ss5957010600	NC_000002.11:203803382:T:	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTT	(self)
ss3063975224, ss3064829873, ss3705835091, ss3802329212, ss3842568800, ss3949900232, ss4059395818, ss5251699133, ss5451344533, ss5686828338, ss5803143527, ss5852914663, ss5934321929	NC_000002.12:202938659:T:	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTT	(self)
1059015760	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTT	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTT	(self)
ss5156069190	NC_000002.11:203803382::T	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTTTT	(self)
ss4059395816, ss5251699135, ss5686828339	NC_000002.12:202938659::T	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTTTT	(self)
1059015760	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTTTT	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTTTT	(self)
ss3705835092, ss3949900233	NC_000002.12:202938660::T	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTTTTT	(self)

Removed from this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Destination RSIDs
ss3335881615	NC_000002.12:202938659:TT:	NC_000002.12:202938659:TTTTTTTTTT:… NC_000002.12:202938659:TTTTTTTTTT:TTTTTTTT

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs138662921

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs138662921