Name: rs140062889
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs140062889

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr7:96990612-96990632 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(CA)₆ / del(CA)₅ / del(CA)₄ / d…
del(CA)₆ / del(CA)₅ / del(CA)₄ / del(CA)₃ / delCACA / delCA / dupCA / dupCACA / dup(CA)₃ / dup(CA)₄
Variation Type: Indel Insertion and Deletion
Frequency: del(CA)₃=0.04846 (588/12134, ALFA)
del(CA)₃=0.1126 (485/4306, 1000G)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: DLX6-AS1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	12134	ACACACACACACACACACACA=0.94033	ACACACACA=0.00000, ACACACACACA=0.00000, ACACACACACACA=0.00000, ACACACACACACACA=0.04846, ACACACACACACACACACACACA=0.00890, ACACACACACACACACACA=0.00223, ACACACACACACACACA=0.00008, ACACACACACACACACACACACACA=0.00000, ACACACACACACACACACACACACACA=0.00000, ACACACACACACACACACACACACACACA=0.00000	0.910853	0.006572	0.082575	28
European	Sub	9764	ACACACACACACACACACACA=0.9262	ACACACACA=0.0000, ACACACACACA=0.0000, ACACACACACACA=0.0000, ACACACACACACACA=0.0600, ACACACACACACACACACACACA=0.0110, ACACACACACACACACACA=0.0028, ACACACACACACACACA=0.0001, ACACACACACACACACACACACACA=0.0000, ACACACACACACACACACACACACACA=0.0000, ACACACACACACACACACACACACACACA=0.0000	0.889053	0.008211	0.102737	18
African	Sub	1502	ACACACACACACACACACACA=1.0000	ACACACACA=0.0000, ACACACACACA=0.0000, ACACACACACACA=0.0000, ACACACACACACACA=0.0000, ACACACACACACACACACACACA=0.0000, ACACACACACACACACACA=0.0000, ACACACACACACACACA=0.0000, ACACACACACACACACACACACACA=0.0000, ACACACACACACACACACACACACACA=0.0000, ACACACACACACACACACACACACACACA=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	48	ACACACACACACACACACACA=1.00	ACACACACA=0.00, ACACACACACA=0.00, ACACACACACACA=0.00, ACACACACACACACA=0.00, ACACACACACACACACACACACA=0.00, ACACACACACACACACACA=0.00, ACACACACACACACACA=0.00, ACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACACA=0.00	1.0	0.0	0.0	N/A
African American	Sub	1454	ACACACACACACACACACACA=1.0000	ACACACACA=0.0000, ACACACACACA=0.0000, ACACACACACACA=0.0000, ACACACACACACACA=0.0000, ACACACACACACACACACACACA=0.0000, ACACACACACACACACACA=0.0000, ACACACACACACACACA=0.0000, ACACACACACACACACACACACACA=0.0000, ACACACACACACACACACACACACACA=0.0000, ACACACACACACACACACACACACACACA=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	60	ACACACACACACACACACACA=1.00	ACACACACA=0.00, ACACACACACA=0.00, ACACACACACACA=0.00, ACACACACACACACA=0.00, ACACACACACACACACACACACA=0.00, ACACACACACACACACACA=0.00, ACACACACACACACACA=0.00, ACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACACA=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	46	ACACACACACACACACACACA=1.00	ACACACACA=0.00, ACACACACACA=0.00, ACACACACACACA=0.00, ACACACACACACACA=0.00, ACACACACACACACACACACACA=0.00, ACACACACACACACACACA=0.00, ACACACACACACACACA=0.00, ACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACACA=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	14	ACACACACACACACACACACA=1.00	ACACACACA=0.00, ACACACACACA=0.00, ACACACACACACA=0.00, ACACACACACACACA=0.00, ACACACACACACACACACACACA=0.00, ACACACACACACACACACA=0.00, ACACACACACACACACA=0.00, ACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACACA=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	82	ACACACACACACACACACACA=1.00	ACACACACA=0.00, ACACACACACA=0.00, ACACACACACACA=0.00, ACACACACACACACA=0.00, ACACACACACACACACACACACA=0.00, ACACACACACACACACACA=0.00, ACACACACACACACACA=0.00, ACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACACA=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	368	ACACACACACACACACACACA=1.000	ACACACACA=0.000, ACACACACACA=0.000, ACACACACACACA=0.000, ACACACACACACACA=0.000, ACACACACACACACACACACACA=0.000, ACACACACACACACACACA=0.000, ACACACACACACACACA=0.000, ACACACACACACACACACACACACA=0.000, ACACACACACACACACACACACACACA=0.000, ACACACACACACACACACACACACACACA=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	60	ACACACACACACACACACACA=1.00	ACACACACA=0.00, ACACACACACA=0.00, ACACACACACACA=0.00, ACACACACACACACA=0.00, ACACACACACACACACACACACA=0.00, ACACACACACACACACACA=0.00, ACACACACACACACACA=0.00, ACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACA=0.00, ACACACACACACACACACACACACACACA=0.00	1.0	0.0	0.0	N/A
Other	Sub	298	ACACACACACACACACACACA=0.990	ACACACACA=0.000, ACACACACACA=0.000, ACACACACACACA=0.000, ACACACACACACACA=0.007, ACACACACACACACACACACACA=0.003, ACACACACACACACACACA=0.000, ACACACACACACACACA=0.000, ACACACACACACACACACACACACA=0.000, ACACACACACACACACACACACACACA=0.000, ACACACACACACACACACACACACACACA=0.000	0.986486	0.0	0.013514	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	12134	(AC)₁₀A=0.94033	del(CA)₆=0.00000, del(CA)₅=0.00000, del(CA)₄=0.00000, del(CA)₃=0.04846, delCACA=0.00008, delCA=0.00223, dupCA=0.00890, dupCACA=0.00000, dup(CA)₃=0.00000, dup(CA)₄=0.00000
Allele Frequency Aggregator	European	Sub	9764	(AC)₁₀A=0.9262	del(CA)₆=0.0000, del(CA)₅=0.0000, del(CA)₄=0.0000, del(CA)₃=0.0600, delCACA=0.0001, delCA=0.0028, dupCA=0.0110, dupCACA=0.0000, dup(CA)₃=0.0000, dup(CA)₄=0.0000
Allele Frequency Aggregator	African	Sub	1502	(AC)₁₀A=1.0000	del(CA)₆=0.0000, del(CA)₅=0.0000, del(CA)₄=0.0000, del(CA)₃=0.0000, delCACA=0.0000, delCA=0.0000, dupCA=0.0000, dupCACA=0.0000, dup(CA)₃=0.0000, dup(CA)₄=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	368	(AC)₁₀A=1.000	del(CA)₆=0.000, del(CA)₅=0.000, del(CA)₄=0.000, del(CA)₃=0.000, delCACA=0.000, delCA=0.000, dupCA=0.000, dupCACA=0.000, dup(CA)₃=0.000, dup(CA)₄=0.000
Allele Frequency Aggregator	Other	Sub	298	(AC)₁₀A=0.990	del(CA)₆=0.000, del(CA)₅=0.000, del(CA)₄=0.000, del(CA)₃=0.007, delCACA=0.000, delCA=0.000, dupCA=0.003, dupCACA=0.000, dup(CA)₃=0.000, dup(CA)₄=0.000
Allele Frequency Aggregator	Latin American 1	Sub	82	(AC)₁₀A=1.00	del(CA)₆=0.00, del(CA)₅=0.00, del(CA)₄=0.00, del(CA)₃=0.00, delCACA=0.00, delCA=0.00, dupCA=0.00, dupCACA=0.00, dup(CA)₃=0.00, dup(CA)₄=0.00
Allele Frequency Aggregator	South Asian	Sub	60	(AC)₁₀A=1.00	del(CA)₆=0.00, del(CA)₅=0.00, del(CA)₄=0.00, del(CA)₃=0.00, delCACA=0.00, delCA=0.00, dupCA=0.00, dupCACA=0.00, dup(CA)₃=0.00, dup(CA)₄=0.00
Allele Frequency Aggregator	Asian	Sub	60	(AC)₁₀A=1.00	del(CA)₆=0.00, del(CA)₅=0.00, del(CA)₄=0.00, del(CA)₃=0.00, delCACA=0.00, delCA=0.00, dupCA=0.00, dupCACA=0.00, dup(CA)₃=0.00, dup(CA)₄=0.00
1000Genomes	Global	Study-wide	4306	(AC)₁₀A=0.8874	del(CA)₃=0.1126
1000Genomes	African	Sub	1038	(AC)₁₀A=0.9326	del(CA)₃=0.0674
1000Genomes	Europe	Sub	987	(AC)₁₀A=0.861	del(CA)₃=0.139
1000Genomes	South Asian	Sub	931	(AC)₁₀A=0.824	del(CA)₃=0.176
1000Genomes	East Asian	Sub	746	(AC)₁₀A=0.966	del(CA)₃=0.034
1000Genomes	American	Sub	604	(AC)₁₀A=0.853	del(CA)₃=0.147

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[4]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[5]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[6]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[7]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[8]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[9]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[11]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[12]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[13]
GRCh38.p14 chr 7	NC_000007.14:g.96990613CA[14]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[4]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[5]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[6]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[7]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[8]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[9]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[11]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[12]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[13]
GRCh37.p13 chr 7	NC_000007.13:g.96619925CA[14]

Gene: DLX6-AS1, DLX6 antisense RNA 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
DLX6-AS1 transcript	NR_015448.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(AC)₁₀A=	del(CA)₆	del(CA)₅	del(CA)₄	del(CA)₃	delCACA	delCA	dupCA	dupCACA	dup(CA)₃	dup(CA)₄
GRCh38.p14 chr 7	NC_000007.14:g.96990612_96990632=	NC_000007.14:g.96990613CA[4]	NC_000007.14:g.96990613CA[5]	NC_000007.14:g.96990613CA[6]	NC_000007.14:g.96990613CA[7]	NC_000007.14:g.96990613CA[8]	NC_000007.14:g.96990613CA[9]	NC_000007.14:g.96990613CA[11]	NC_000007.14:g.96990613CA[12]	NC_000007.14:g.96990613CA[13]	NC_000007.14:g.96990613CA[14]
GRCh37.p13 chr 7	NC_000007.13:g.96619924_96619944=	NC_000007.13:g.96619925CA[4]	NC_000007.13:g.96619925CA[5]	NC_000007.13:g.96619925CA[6]	NC_000007.13:g.96619925CA[7]	NC_000007.13:g.96619925CA[8]	NC_000007.13:g.96619925CA[9]	NC_000007.13:g.96619925CA[11]	NC_000007.13:g.96619925CA[12]	NC_000007.13:g.96619925CA[13]	NC_000007.13:g.96619925CA[14]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

79 SubSNP, 36 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	YUSUKE	ss4477956	Oct 12, 2018 (152)
2	HGSV	ss79950837	Oct 12, 2018 (152)
3	HGSV	ss79982468	Oct 12, 2018 (152)
4	GMI	ss288859876	May 04, 2012 (137)
5	GMI	ss288859877	Oct 12, 2018 (152)
6	1000GENOMES	ss327020824	May 09, 2011 (134)
7	1000GENOMES	ss327315643	May 09, 2011 (134)
8	LUNTER	ss551764311	Apr 25, 2013 (138)
9	LUNTER	ss551968493	Apr 25, 2013 (138)
10	SSMP	ss663811065	Apr 01, 2015 (144)
11	1000GENOMES	ss1377403293	Aug 21, 2014 (142)
12	1000GENOMES	ss1377403296	Aug 21, 2014 (142)
13	1000GENOMES	ss1377403299	Aug 21, 2014 (142)
14	DDI	ss1536556517	Apr 01, 2015 (144)
15	EVA_DECODE	ss1594149533	Apr 01, 2015 (144)
16	EVA_UK10K_ALSPAC	ss1705741578	Apr 01, 2015 (144)
17	EVA_UK10K_TWINSUK	ss1705741776	Apr 01, 2015 (144)
18	EVA_UK10K_ALSPAC	ss1710338476	Apr 01, 2015 (144)
19	EVA_UK10K_TWINSUK	ss1710342527	Apr 01, 2015 (144)
20	SWEGEN	ss3001674845	Nov 08, 2017 (151)
21	MCHAISSO	ss3065148961	Nov 08, 2017 (151)
22	MCHAISSO	ss3066158624	Nov 08, 2017 (151)
23	BEROUKHIMLAB	ss3644244263	Oct 12, 2018 (152)
24	EVA_DECODE	ss3720261534	Jul 13, 2019 (153)
25	EVA_DECODE	ss3720261535	Jul 13, 2019 (153)
26	EVA_DECODE	ss3720261536	Jul 13, 2019 (153)
27	EVA_DECODE	ss3720261537	Jul 13, 2019 (153)
28	EVA_DECODE	ss3720261539	Jul 13, 2019 (153)
29	ACPOP	ss3734885730	Jul 13, 2019 (153)
30	ACPOP	ss3734885731	Jul 13, 2019 (153)
31	PACBIO	ss3785900097	Jul 13, 2019 (153)
32	PACBIO	ss3791189412	Jul 13, 2019 (153)
33	PACBIO	ss3796069405	Jul 13, 2019 (153)
34	KHV_HUMAN_GENOMES	ss3810074649	Jul 13, 2019 (153)
35	KHV_HUMAN_GENOMES	ss3810074650	Jul 13, 2019 (153)
36	KHV_HUMAN_GENOMES	ss3810074651	Jul 13, 2019 (153)
37	KHV_HUMAN_GENOMES	ss3810074652	Jul 13, 2019 (153)
38	EVA	ss3838855456	Apr 26, 2020 (154)
39	EVA	ss3844310494	Apr 26, 2020 (154)
40	KOGIC	ss3962145571	Apr 26, 2020 (154)
41	KOGIC	ss3962145572	Apr 26, 2020 (154)
42	KOGIC	ss3962145573	Apr 26, 2020 (154)
43	KOGIC	ss3962145574	Apr 26, 2020 (154)
44	KOGIC	ss3962145575	Apr 26, 2020 (154)
45	KOGIC	ss3962145576	Apr 26, 2020 (154)
46	GNOMAD	ss4169030351	Apr 26, 2021 (155)
47	GNOMAD	ss4169030352	Apr 26, 2021 (155)
48	GNOMAD	ss4169030353	Apr 26, 2021 (155)
49	GNOMAD	ss4169030354	Apr 26, 2021 (155)
50	GNOMAD	ss4169030356	Apr 26, 2021 (155)
51	GNOMAD	ss4169030357	Apr 26, 2021 (155)
52	GNOMAD	ss4169030358	Apr 26, 2021 (155)
53	GNOMAD	ss4169030359	Apr 26, 2021 (155)
54	GNOMAD	ss4169030360	Apr 26, 2021 (155)
55	TOMMO_GENOMICS	ss5184569556	Apr 26, 2021 (155)
56	TOMMO_GENOMICS	ss5184569557	Apr 26, 2021 (155)
57	TOMMO_GENOMICS	ss5184569558	Apr 26, 2021 (155)
58	TOMMO_GENOMICS	ss5184569559	Apr 26, 2021 (155)
59	TOMMO_GENOMICS	ss5184569560	Apr 26, 2021 (155)
60	TOMMO_GENOMICS	ss5184569561	Apr 26, 2021 (155)
61	1000G_HIGH_COVERAGE	ss5273961569	Oct 13, 2022 (156)
62	1000G_HIGH_COVERAGE	ss5273961570	Oct 13, 2022 (156)
63	1000G_HIGH_COVERAGE	ss5273961571	Oct 13, 2022 (156)
64	1000G_HIGH_COVERAGE	ss5273961572	Oct 13, 2022 (156)
65	1000G_HIGH_COVERAGE	ss5273961573	Oct 13, 2022 (156)
66	1000G_HIGH_COVERAGE	ss5273961574	Oct 13, 2022 (156)
67	HUGCELL_USP	ss5470941438	Oct 13, 2022 (156)
68	HUGCELL_USP	ss5470941439	Oct 13, 2022 (156)
69	HUGCELL_USP	ss5470941440	Oct 13, 2022 (156)
70	HUGCELL_USP	ss5470941441	Oct 13, 2022 (156)
71	HUGCELL_USP	ss5470941442	Oct 13, 2022 (156)
72	HUGCELL_USP	ss5470941443	Oct 13, 2022 (156)
73	TOMMO_GENOMICS	ss5725249483	Oct 13, 2022 (156)
74	TOMMO_GENOMICS	ss5725249484	Oct 13, 2022 (156)
75	TOMMO_GENOMICS	ss5725249485	Oct 13, 2022 (156)
76	TOMMO_GENOMICS	ss5725249486	Oct 13, 2022 (156)
77	TOMMO_GENOMICS	ss5725249487	Oct 13, 2022 (156)
78	EVA	ss5823228905	Oct 13, 2022 (156)
79	EVA	ss5823228906	Oct 13, 2022 (156)
80	1000Genomes	NC_000007.13 - 96619924	Oct 12, 2018 (152)
81	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 21298787 (NC_000007.13:96619923:ACACAC: 558/3854) Row 21298788 (NC_000007.13:96619923::AC 361/3854)	-	Oct 12, 2018 (152)
82	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 21298787 (NC_000007.13:96619923:ACACAC: 558/3854) Row 21298788 (NC_000007.13:96619923::AC 361/3854)	-	Oct 12, 2018 (152)
83	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
84	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
85	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
86	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
87	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
88	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
89	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
90	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
91	gnomAD - Genomes Submission ignored due to conflicting rows: Row 270072622 (NC_000007.14:96990611::AC 5865/137434) Row 270072623 (NC_000007.14:96990611::ACAC 19/137486) Row 270072624 (NC_000007.14:96990611::ACACAC 464/137482)...	-	Apr 26, 2021 (155)
92	Korean Genome Project Submission ignored due to conflicting rows: Row 18523572 (NC_000007.14:96990619::AC 614/1832) Row 18523573 (NC_000007.14:96990613:ACACAC: 43/1832) Row 18523574 (NC_000007.14:96990617:AC: 16/1832)...	-	Apr 26, 2020 (154)
93	Korean Genome Project Submission ignored due to conflicting rows: Row 18523572 (NC_000007.14:96990619::AC 614/1832) Row 18523573 (NC_000007.14:96990613:ACACAC: 43/1832) Row 18523574 (NC_000007.14:96990617:AC: 16/1832)...	-	Apr 26, 2020 (154)
94	Korean Genome Project Submission ignored due to conflicting rows: Row 18523572 (NC_000007.14:96990619::AC 614/1832) Row 18523573 (NC_000007.14:96990613:ACACAC: 43/1832) Row 18523574 (NC_000007.14:96990617:AC: 16/1832)...	-	Apr 26, 2020 (154)
95	Korean Genome Project Submission ignored due to conflicting rows: Row 18523572 (NC_000007.14:96990619::AC 614/1832) Row 18523573 (NC_000007.14:96990613:ACACAC: 43/1832) Row 18523574 (NC_000007.14:96990617:AC: 16/1832)...	-	Apr 26, 2020 (154)
96	Korean Genome Project Submission ignored due to conflicting rows: Row 18523572 (NC_000007.14:96990619::AC 614/1832) Row 18523573 (NC_000007.14:96990613:ACACAC: 43/1832) Row 18523574 (NC_000007.14:96990617:AC: 16/1832)...	-	Apr 26, 2020 (154)
97	Korean Genome Project Submission ignored due to conflicting rows: Row 18523572 (NC_000007.14:96990619::AC 614/1832) Row 18523573 (NC_000007.14:96990613:ACACAC: 43/1832) Row 18523574 (NC_000007.14:96990617:AC: 16/1832)...	-	Apr 26, 2020 (154)
98	Northern Sweden Submission ignored due to conflicting rows: Row 8170595 (NC_000007.13:96619923:ACACAC: 115/600) Row 8170596 (NC_000007.13:96619923::AC 11/600)	-	Jul 13, 2019 (153)
99	Northern Sweden Submission ignored due to conflicting rows: Row 8170595 (NC_000007.13:96619923:ACACAC: 115/600) Row 8170596 (NC_000007.13:96619923::AC 11/600)	-	Jul 13, 2019 (153)
100	8.3KJPN Submission ignored due to conflicting rows: Row 42538863 (NC_000007.13:96619923::AC 5745/16758) Row 42538864 (NC_000007.13:96619923:AC: 15/16758) Row 42538865 (NC_000007.13:96619923:ACACAC: 277/16758)...	-	Apr 26, 2021 (155)
101	8.3KJPN Submission ignored due to conflicting rows: Row 42538863 (NC_000007.13:96619923::AC 5745/16758) Row 42538864 (NC_000007.13:96619923:AC: 15/16758) Row 42538865 (NC_000007.13:96619923:ACACAC: 277/16758)...	-	Apr 26, 2021 (155)
102	8.3KJPN Submission ignored due to conflicting rows: Row 42538863 (NC_000007.13:96619923::AC 5745/16758) Row 42538864 (NC_000007.13:96619923:AC: 15/16758) Row 42538865 (NC_000007.13:96619923:ACACAC: 277/16758)...	-	Apr 26, 2021 (155)
103	8.3KJPN Submission ignored due to conflicting rows: Row 42538863 (NC_000007.13:96619923::AC 5745/16758) Row 42538864 (NC_000007.13:96619923:AC: 15/16758) Row 42538865 (NC_000007.13:96619923:ACACAC: 277/16758)...	-	Apr 26, 2021 (155)
104	8.3KJPN Submission ignored due to conflicting rows: Row 42538863 (NC_000007.13:96619923::AC 5745/16758) Row 42538864 (NC_000007.13:96619923:AC: 15/16758) Row 42538865 (NC_000007.13:96619923:ACACAC: 277/16758)...	-	Apr 26, 2021 (155)
105	8.3KJPN Submission ignored due to conflicting rows: Row 42538863 (NC_000007.13:96619923::AC 5745/16758) Row 42538864 (NC_000007.13:96619923:AC: 15/16758) Row 42538865 (NC_000007.13:96619923:ACACAC: 277/16758)...	-	Apr 26, 2021 (155)
106	14KJPN Submission ignored due to conflicting rows: Row 59086587 (NC_000007.14:96990611::AC 9703/28258) Row 59086588 (NC_000007.14:96990611:ACACAC: 450/28258) Row 59086589 (NC_000007.14:96990611::ACAC 30/28258)...	-	Oct 13, 2022 (156)
107	14KJPN Submission ignored due to conflicting rows: Row 59086587 (NC_000007.14:96990611::AC 9703/28258) Row 59086588 (NC_000007.14:96990611:ACACAC: 450/28258) Row 59086589 (NC_000007.14:96990611::ACAC 30/28258)...	-	Oct 13, 2022 (156)
108	14KJPN Submission ignored due to conflicting rows: Row 59086587 (NC_000007.14:96990611::AC 9703/28258) Row 59086588 (NC_000007.14:96990611:ACACAC: 450/28258) Row 59086589 (NC_000007.14:96990611::ACAC 30/28258)...	-	Oct 13, 2022 (156)
109	14KJPN Submission ignored due to conflicting rows: Row 59086587 (NC_000007.14:96990611::AC 9703/28258) Row 59086588 (NC_000007.14:96990611:ACACAC: 450/28258) Row 59086589 (NC_000007.14:96990611::ACAC 30/28258)...	-	Oct 13, 2022 (156)
110	14KJPN Submission ignored due to conflicting rows: Row 59086587 (NC_000007.14:96990611::AC 9703/28258) Row 59086588 (NC_000007.14:96990611:ACACAC: 450/28258) Row 59086589 (NC_000007.14:96990611::ACAC 30/28258)...	-	Oct 13, 2022 (156)
111	UK 10K study - Twins Submission ignored due to conflicting rows: Row 21298787 (NC_000007.13:96619923:ACACAC: 517/3708) Row 21298788 (NC_000007.13:96619923::AC 354/3708)	-	Oct 12, 2018 (152)
112	UK 10K study - Twins Submission ignored due to conflicting rows: Row 21298787 (NC_000007.13:96619923:ACACAC: 517/3708) Row 21298788 (NC_000007.13:96619923::AC 354/3708)	-	Oct 12, 2018 (152)
113	A Vietnamese Genetic Variation Database Submission ignored due to conflicting rows: Row 4750536 (NC_000007.13:96619923::AC 56/211) Row 4750537 (NC_000007.13:96619923:ACACAC: 3/158)	-	Jul 13, 2019 (153)
114	A Vietnamese Genetic Variation Database Submission ignored due to conflicting rows: Row 4750536 (NC_000007.13:96619923::AC 56/211) Row 4750537 (NC_000007.13:96619923:ACACAC: 3/158)	-	Jul 13, 2019 (153)
115	ALFA	NC_000007.14 - 96990612	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACA	(self)
ss4169030360	NC_000007.14:96990611:ACACACACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACA	(self)
ss3962145575, ss4169030359, ss5273961574, ss5470941443	NC_000007.14:96990611:ACACACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACA	(self)
ss288859876, ss327020824, ss551764311	NC_000007.12:96457859:ACACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACA	(self)
38273451, ss1377403293, ss1536556517, ss1705741578, ss1705741776, ss3001674845, ss3644244263, ss3734885730, ss3785900097, ss3791189412, ss3796069405, ss3838855456, ss5184569558, ss5823228905	NC_000007.13:96619923:ACACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACA	(self)
ss3065148961, ss3720261537, ss3810074650, ss3844310494, ss4169030358, ss5273961571, ss5470941438, ss5725249484	NC_000007.14:96990611:ACACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACA	(self)
ss3962145572	NC_000007.14:96990613:ACACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACA	(self)
ss327315643, ss551968493	NC_000007.12:96457859:ACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	(self)
ss5184569560	NC_000007.13:96619923:ACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	(self)
ss1377403296	NC_000007.13:96619925:ACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	(self)
ss3066158624, ss4169030357, ss5273961569, ss5470941440, ss5725249487	NC_000007.14:96990611:ACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	(self)
ss3720261536, ss3810074649	NC_000007.14:96990613:ACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	(self)
ss3962145576	NC_000007.14:96990615:ACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACA	(self)
ss5184569557	NC_000007.13:96619923:AC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACA	(self)
ss4169030356, ss5273961570, ss5470941439, ss5725249486	NC_000007.14:96990611:AC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACA	(self)
ss3720261535	NC_000007.14:96990615:AC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACA	(self)
ss3962145573	NC_000007.14:96990617:AC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACA	(self)
ss1594149533	NC_000007.12:96457879::AC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss288859877	NC_000007.12:96457880::CA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss663811065, ss3734885731, ss5184569556, ss5823228906	NC_000007.13:96619923::AC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss1377403299, ss1710338476, ss1710342527	NC_000007.13:96619929::AC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss3810074651, ss4169030351, ss5273961572, ss5470941441, ss5725249483	NC_000007.14:96990611::AC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss3720261534, ss3810074652	NC_000007.14:96990617::AC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss3962145571	NC_000007.14:96990619::AC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss3720261539	NC_000007.14:96990632::CA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss4477956, ss79950837, ss79982468	NT_007933.15:34652787::CA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACA	(self)
ss5184569559	NC_000007.13:96619923::ACAC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACA	(self)
ss4169030352, ss5725249485	NC_000007.14:96990611::ACAC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACA	(self)
ss3962145574	NC_000007.14:96990619::ACAC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACA	(self)
ss4169030353, ss5273961573, ss5470941442	NC_000007.14:96990611::ACACAC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACACA	(self)
ss5184569561	NC_000007.13:96619923::ACACACAC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACACACA	(self)
ss4169030354	NC_000007.14:96990611::ACACACAC	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACACACA	(self)
10429066103	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACACACA	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACACACACACACACACACACA	(self)

Removed from this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Destination RSIDs
ss2465441070	NC_000007.13:96619923:ACACACACAC:	NC_000007.14:96990611:ACACACACACAC… NC_000007.14:96990611:ACACACACACACACACACACA:ACACACACACA

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs140062889

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs140062889