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dbSNP Short Genetic Variations

Examples: rs268, BRCA1 and more Advanced search

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1404162025

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr16:20924006 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>G
Variation Type
SNV Single Nucleotide Variation
Frequency
G=0.000004 (1/264690, TOPMED)
G=0.000004 (1/239438, GnomAD_exome)
G=0.00000 (0/10680, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
LYRM1 : Missense Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 10680 C=1.00000 G=0.00000 1.0 0.0 0.0 N/A
European Sub 6962 C=1.0000 G=0.0000 1.0 0.0 0.0 N/A
African Sub 2294 C=1.0000 G=0.0000 1.0 0.0 0.0 N/A
African Others Sub 84 C=1.00 G=0.00 1.0 0.0 0.0 N/A
African American Sub 2210 C=1.0000 G=0.0000 1.0 0.0 0.0 N/A
Asian Sub 108 C=1.000 G=0.000 1.0 0.0 0.0 N/A
East Asian Sub 84 C=1.00 G=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 24 C=1.00 G=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 146 C=1.000 G=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 610 C=1.000 G=0.000 1.0 0.0 0.0 N/A
South Asian Sub 94 C=1.00 G=0.00 1.0 0.0 0.0 N/A
Other Sub 466 C=1.000 G=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.999996 G=0.000004
gnomAD - Exomes Global Study-wide 239438 C=0.999996 G=0.000004
gnomAD - Exomes European Sub 131848 C=1.000000 G=0.000000
gnomAD - Exomes Asian Sub 45452 C=1.00000 G=0.00000
gnomAD - Exomes American Sub 30868 C=0.99997 G=0.00003
gnomAD - Exomes African Sub 16026 C=1.00000 G=0.00000
gnomAD - Exomes Ashkenazi Jewish Sub 9418 C=1.0000 G=0.0000
gnomAD - Exomes Other Sub 5826 C=1.0000 G=0.0000
Allele Frequency Aggregator Total Global 10680 C=1.00000 G=0.00000
Allele Frequency Aggregator European Sub 6962 C=1.0000 G=0.0000
Allele Frequency Aggregator African Sub 2294 C=1.0000 G=0.0000
Allele Frequency Aggregator Latin American 2 Sub 610 C=1.000 G=0.000
Allele Frequency Aggregator Other Sub 466 C=1.000 G=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 C=1.000 G=0.000
Allele Frequency Aggregator Asian Sub 108 C=1.000 G=0.000
Allele Frequency Aggregator South Asian Sub 94 C=1.00 G=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 16 NC_000016.10:g.20924006C>G
GRCh37.p13 chr 16 NC_000016.9:g.20935328C>G
Gene: LYRM1, LYR motif containing 1 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
LYRM1 transcript variant 3 NM_001128302.3:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001121774.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 16 NM_001369636.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356565.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 19 NM_001369639.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356568.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 14 NM_001369634.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356563.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 15 NM_001369635.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356564.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 12 NM_001369632.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356561.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 23 NM_001369645.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356574.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 22 NM_001369644.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356573.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 1 NM_020424.5:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_065157.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 20 NM_001369641.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356570.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 4 NM_001302835.2:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001289764.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 17 NM_001369637.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356566.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 2 NM_001128301.3:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001121773.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 13 NM_001369633.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356562.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 5 NM_001302836.2:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001289765.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 11 NM_001369631.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 2 NP_001356560.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 21 NM_001369642.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356571.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 18 NM_001369638.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform 1 NP_001356567.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant 25 NR_161426.1:n.445C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 27 NR_161429.1:n.466C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 6 NR_126516.2:n.451C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 8 NR_126521.2:n.219C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 7 NR_126520.2:n.223C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 10 NR_126528.2:n.455C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 24 NR_161425.1:n.219C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 26 NR_161427.1:n.208C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 9 NR_126527.2:n.183C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 28 NR_161430.1:n.289C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 30 NR_161432.1:n.533C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant 29 NR_161431.1:n.415C>G N/A Non Coding Transcript Variant
LYRM1 transcript variant X1 XM_017023475.2:c.652C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X1 XP_016878964.2:p.Leu218Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X2 XM_047434371.1:c.637C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X2 XP_047290327.1:p.Leu213Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X3 XM_017023476.2:c.544C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X3 XP_016878965.2:p.Leu182Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X4 XM_011545900.3:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_011544202.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X5 XM_011545901.3:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_011544203.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X6 XM_047434372.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290328.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X7 XM_047434373.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290329.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X8 XM_047434374.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290330.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X9 XM_047434375.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290331.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X10 XM_047434376.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290332.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X11 XM_047434377.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290333.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X12 XM_047434378.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290334.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X13 XM_047434379.1:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_047290335.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X14 XM_017023478.2:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_016878967.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X15 XM_011545908.3:c.274C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X4 XP_011544210.1:p.Leu92Val L (Leu) > V (Val) Missense Variant
LYRM1 transcript variant X16 XM_047434380.1:c.259C>G L [CTG] > V [GTG] Coding Sequence Variant
LYR motif-containing protein 1 isoform X5 XP_047290336.1:p.Leu87Val L (Leu) > V (Val) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= G
GRCh38.p14 chr 16 NC_000016.10:g.20924006= NC_000016.10:g.20924006C>G
GRCh37.p13 chr 16 NC_000016.9:g.20935328= NC_000016.9:g.20935328C>G
LYRM1 transcript variant 1 NM_020424.5:c.259= NM_020424.5:c.259C>G
LYRM1 transcript variant 1 NM_020424.4:c.259= NM_020424.4:c.259C>G
LYRM1 transcript variant 1 NM_020424.3:c.259= NM_020424.3:c.259C>G
LYRM1 transcript variant 2 NM_001128301.3:c.259= NM_001128301.3:c.259C>G
LYRM1 transcript variant 2 NM_001128301.2:c.259= NM_001128301.2:c.259C>G
LYRM1 transcript variant 2 NM_001128301.1:c.259= NM_001128301.1:c.259C>G
LYRM1 transcript variant X15 XM_011545908.3:c.274= XM_011545908.3:c.274C>G
LYRM1 transcript variant X10 XM_011545908.2:c.274= XM_011545908.2:c.274C>G
LYRM1 transcript variant X11 XM_011545908.1:c.274= XM_011545908.1:c.274C>G
LYRM1 transcript variant X5 XM_011545901.3:c.274= XM_011545901.3:c.274C>G
LYRM1 transcript variant X8 XM_011545901.2:c.274= XM_011545901.2:c.274C>G
LYRM1 transcript variant X4 XM_011545901.1:c.274= XM_011545901.1:c.274C>G
LYRM1 transcript variant 3 NM_001128302.3:c.259= NM_001128302.3:c.259C>G
LYRM1 transcript variant 3 NM_001128302.2:c.259= NM_001128302.2:c.259C>G
LYRM1 transcript variant 3 NM_001128302.1:c.259= NM_001128302.1:c.259C>G
LYRM1 transcript variant X4 XM_011545900.3:c.274= XM_011545900.3:c.274C>G
LYRM1 transcript variant X5 XM_011545900.2:c.274= XM_011545900.2:c.274C>G
LYRM1 transcript variant X3 XM_011545900.1:c.274= XM_011545900.1:c.274C>G
LYRM1 transcript variant X1 XM_017023475.2:c.652= XM_017023475.2:c.652C>G
LYRM1 transcript variant X1 XM_017023475.1:c.889= XM_017023475.1:c.889C>G
LYRM1 transcript variant 4 NM_001302835.2:c.259= NM_001302835.2:c.259C>G
LYRM1 transcript variant 4 NM_001302835.1:c.259= NM_001302835.1:c.259C>G
LYRM1 transcript variant X3 XM_017023476.2:c.544= XM_017023476.2:c.544C>G
LYRM1 transcript variant X2 XM_017023476.1:c.781= XM_017023476.1:c.781C>G
LYRM1 transcript variant 5 NM_001302836.2:c.259= NM_001302836.2:c.259C>G
LYRM1 transcript variant 5 NM_001302836.1:c.259= NM_001302836.1:c.259C>G
LYRM1 transcript variant X14 XM_017023478.2:c.274= XM_017023478.2:c.274C>G
LYRM1 transcript variant X9 XM_017023478.1:c.274= XM_017023478.1:c.274C>G
LYRM1 transcript variant 10 NR_126528.2:n.455= NR_126528.2:n.455C>G
LYRM1 transcript variant 10 NR_126528.1:n.570= NR_126528.1:n.570C>G
LYRM1 transcript variant 6 NR_126516.2:n.451= NR_126516.2:n.451C>G
LYRM1 transcript variant 6 NR_126516.1:n.556= NR_126516.1:n.556C>G
LYRM1 transcript variant 7 NR_126520.2:n.223= NR_126520.2:n.223C>G
LYRM1 transcript variant 7 NR_126520.1:n.338= NR_126520.1:n.338C>G
LYRM1 transcript variant 8 NR_126521.2:n.219= NR_126521.2:n.219C>G
LYRM1 transcript variant 8 NR_126521.1:n.324= NR_126521.1:n.324C>G
LYRM1 transcript variant 9 NR_126527.2:n.183= NR_126527.2:n.183C>G
LYRM1 transcript variant 9 NR_126527.1:n.152= NR_126527.1:n.152C>G
LYRM1 transcript variant X9 XM_047434375.1:c.274= XM_047434375.1:c.274C>G
LYRM1 transcript variant X10 XM_047434376.1:c.274= XM_047434376.1:c.274C>G
LYRM1 transcript variant X13 XM_047434379.1:c.274= XM_047434379.1:c.274C>G
LYRM1 transcript variant X7 XM_047434373.1:c.274= XM_047434373.1:c.274C>G
LYRM1 transcript variant X16 XM_047434380.1:c.259= XM_047434380.1:c.259C>G
LYRM1 transcript variant X12 XM_047434378.1:c.274= XM_047434378.1:c.274C>G
LYRM1 transcript variant X2 XM_047434371.1:c.637= XM_047434371.1:c.637C>G
LYRM1 transcript variant 21 NM_001369642.1:c.259= NM_001369642.1:c.259C>G
LYRM1 transcript variant X6 XM_047434372.1:c.274= XM_047434372.1:c.274C>G
LYRM1 transcript variant 23 NM_001369645.1:c.259= NM_001369645.1:c.259C>G
LYRM1 transcript variant 11 NM_001369631.1:c.274= NM_001369631.1:c.274C>G
LYRM1 transcript variant X8 XM_047434374.1:c.274= XM_047434374.1:c.274C>G
LYRM1 transcript variant 13 NM_001369633.1:c.259= NM_001369633.1:c.259C>G
LYRM1 transcript variant 18 NM_001369638.1:c.259= NM_001369638.1:c.259C>G
LYRM1 transcript variant 19 NM_001369639.1:c.259= NM_001369639.1:c.259C>G
LYRM1 transcript variant 30 NR_161432.1:n.533= NR_161432.1:n.533C>G
LYRM1 transcript variant X11 XM_047434377.1:c.274= XM_047434377.1:c.274C>G
LYRM1 transcript variant 27 NR_161429.1:n.466= NR_161429.1:n.466C>G
LYRM1 transcript variant 14 NM_001369634.1:c.259= NM_001369634.1:c.259C>G
LYRM1 transcript variant 22 NM_001369644.1:c.259= NM_001369644.1:c.259C>G
LYRM1 transcript variant 16 NM_001369636.1:c.259= NM_001369636.1:c.259C>G
LYRM1 transcript variant 25 NR_161426.1:n.445= NR_161426.1:n.445C>G
LYRM1 transcript variant 29 NR_161431.1:n.415= NR_161431.1:n.415C>G
LYRM1 transcript variant 20 NM_001369641.1:c.259= NM_001369641.1:c.259C>G
LYRM1 transcript variant 12 NM_001369632.1:c.259= NM_001369632.1:c.259C>G
LYRM1 transcript variant 17 NM_001369637.1:c.259= NM_001369637.1:c.259C>G
LYRM1 transcript variant 28 NR_161430.1:n.289= NR_161430.1:n.289C>G
LYRM1 transcript variant 15 NM_001369635.1:c.259= NM_001369635.1:c.259C>G
LYRM1 transcript variant 24 NR_161425.1:n.219= NR_161425.1:n.219C>G
LYRM1 transcript variant 26 NR_161427.1:n.208= NR_161427.1:n.208C>G
LYR motif-containing protein 1 isoform 1 NP_065157.1:p.Leu87= NP_065157.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001121773.1:p.Leu87= NP_001121773.1:p.Leu87Val
LYR motif-containing protein 1 isoform X4 XP_011544210.1:p.Leu92= XP_011544210.1:p.Leu92Val
LYR motif-containing protein 1 isoform X4 XP_011544203.1:p.Leu92= XP_011544203.1:p.Leu92Val
LYR motif-containing protein 1 isoform 1 NP_001121774.1:p.Leu87= NP_001121774.1:p.Leu87Val
LYR motif-containing protein 1 isoform X4 XP_011544202.1:p.Leu92= XP_011544202.1:p.Leu92Val
LYR motif-containing protein 1 isoform X1 XP_016878964.2:p.Leu218= XP_016878964.2:p.Leu218Val
LYR motif-containing protein 1 isoform 1 NP_001289764.1:p.Leu87= NP_001289764.1:p.Leu87Val
LYR motif-containing protein 1 isoform X3 XP_016878965.2:p.Leu182= XP_016878965.2:p.Leu182Val
LYR motif-containing protein 1 isoform 1 NP_001289765.1:p.Leu87= NP_001289765.1:p.Leu87Val
LYR motif-containing protein 1 isoform X4 XP_016878967.1:p.Leu92= XP_016878967.1:p.Leu92Val
LYR motif-containing protein 1 isoform X4 XP_047290331.1:p.Leu92= XP_047290331.1:p.Leu92Val
LYR motif-containing protein 1 isoform X4 XP_047290332.1:p.Leu92= XP_047290332.1:p.Leu92Val
LYR motif-containing protein 1 isoform X4 XP_047290335.1:p.Leu92= XP_047290335.1:p.Leu92Val
LYR motif-containing protein 1 isoform X4 XP_047290329.1:p.Leu92= XP_047290329.1:p.Leu92Val
LYR motif-containing protein 1 isoform X5 XP_047290336.1:p.Leu87= XP_047290336.1:p.Leu87Val
LYR motif-containing protein 1 isoform X4 XP_047290334.1:p.Leu92= XP_047290334.1:p.Leu92Val
LYR motif-containing protein 1 isoform X2 XP_047290327.1:p.Leu213= XP_047290327.1:p.Leu213Val
LYR motif-containing protein 1 isoform 1 NP_001356571.1:p.Leu87= NP_001356571.1:p.Leu87Val
LYR motif-containing protein 1 isoform X4 XP_047290328.1:p.Leu92= XP_047290328.1:p.Leu92Val
LYR motif-containing protein 1 isoform 1 NP_001356574.1:p.Leu87= NP_001356574.1:p.Leu87Val
LYR motif-containing protein 1 isoform 2 NP_001356560.1:p.Leu92= NP_001356560.1:p.Leu92Val
LYR motif-containing protein 1 isoform X4 XP_047290330.1:p.Leu92= XP_047290330.1:p.Leu92Val
LYR motif-containing protein 1 isoform 1 NP_001356562.1:p.Leu87= NP_001356562.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356567.1:p.Leu87= NP_001356567.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356568.1:p.Leu87= NP_001356568.1:p.Leu87Val
LYR motif-containing protein 1 isoform X4 XP_047290333.1:p.Leu92= XP_047290333.1:p.Leu92Val
LYR motif-containing protein 1 isoform 1 NP_001356563.1:p.Leu87= NP_001356563.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356573.1:p.Leu87= NP_001356573.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356565.1:p.Leu87= NP_001356565.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356570.1:p.Leu87= NP_001356570.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356561.1:p.Leu87= NP_001356561.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356566.1:p.Leu87= NP_001356566.1:p.Leu87Val
LYR motif-containing protein 1 isoform 1 NP_001356564.1:p.Leu87= NP_001356564.1:p.Leu87Val
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Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

2 SubSNP, 3 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2741816733 Nov 08, 2017 (151)
2 TOPMED ss5010564367 Apr 27, 2021 (155)
3 gnomAD - Exomes NC_000016.9 - 20935328 Jul 13, 2019 (153)
4 TopMed NC_000016.10 - 20924006 Apr 27, 2021 (155)
5 ALFA NC_000016.10 - 20924006 Apr 27, 2021 (155)
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History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
11095015, ss2741816733 NC_000016.9:20935327:C:G NC_000016.10:20924005:C:G (self)
226110028, 1636284216, ss5010564367 NC_000016.10:20924005:C:G NC_000016.10:20924005:C:G (self)
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Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1404162025

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The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d