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dbSNP Short Genetic Variations

Examples: rs268, BRCA1 and more Advanced search

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1437374230

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr11:8912485 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>T
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.000015 (4/264690, TOPMED)
T=0.00000 (0/14050, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
AKIP1 : Synonymous Variant
DENND2B : 2KB Upstream Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 14050 C=1.00000 T=0.00000 1.0 0.0 0.0 N/A
European Sub 9690 C=1.0000 T=0.0000 1.0 0.0 0.0 N/A
African Sub 2898 C=1.0000 T=0.0000 1.0 0.0 0.0 N/A
African Others Sub 114 C=1.000 T=0.000 1.0 0.0 0.0 N/A
African American Sub 2784 C=1.0000 T=0.0000 1.0 0.0 0.0 N/A
Asian Sub 112 C=1.000 T=0.000 1.0 0.0 0.0 N/A
East Asian Sub 86 C=1.00 T=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 26 C=1.00 T=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 146 C=1.000 T=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 610 C=1.000 T=0.000 1.0 0.0 0.0 N/A
South Asian Sub 98 C=1.00 T=0.00 1.0 0.0 0.0 N/A
Other Sub 496 C=1.000 T=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.999985 T=0.000015
Allele Frequency Aggregator Total Global 14050 C=1.00000 T=0.00000
Allele Frequency Aggregator European Sub 9690 C=1.0000 T=0.0000
Allele Frequency Aggregator African Sub 2898 C=1.0000 T=0.0000
Allele Frequency Aggregator Latin American 2 Sub 610 C=1.000 T=0.000
Allele Frequency Aggregator Other Sub 496 C=1.000 T=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 C=1.000 T=0.000
Allele Frequency Aggregator Asian Sub 112 C=1.000 T=0.000
Allele Frequency Aggregator South Asian Sub 98 C=1.00 T=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 11 NC_000011.10:g.8912485C>T
GRCh37.p13 chr 11 NC_000011.9:g.8934032C>T
DENND2B RefSeqGene NG_029450.1:g.3467G>A
AKIP1 RefSeqGene NG_030417.1:g.6332C>T
Gene: AKIP1, A-kinase interacting protein 1 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
AKIP1 transcript variant 2 NM_001206646.2:c.222+814C…

NM_001206646.2:c.222+814C>T

 		N/A Intron Variant
AKIP1 transcript variant 4 NM_001206648.2:c.222+814C…

NM_001206648.2:c.222+814C>T

 		N/A Intron Variant
AKIP1 transcript variant 1 NM_020642.4:c.255C>T S [TCC] > S [TCT] Coding Sequence Variant
A-kinase-interacting protein 1 isoform a NP_065693.2:p.Ser85= S (Ser) > S (Ser) Synonymous Variant
AKIP1 transcript variant 3 NM_001206647.2:c.255C>T S [TCC] > S [TCT] Coding Sequence Variant
A-kinase-interacting protein 1 isoform c NP_001193576.1:p.Ser85= S (Ser) > S (Ser) Synonymous Variant
AKIP1 transcript variant 5 NR_045417.2:n.516C>T N/A Non Coding Transcript Variant
AKIP1 transcript variant 6 NR_045418.2:n. N/A Intron Variant
AKIP1 transcript variant X2 XM_047427261.1:c.222+814C…

XM_047427261.1:c.222+814C>T

 		N/A Intron Variant
AKIP1 transcript variant X1 XM_017018011.2:c.255C>T S [TCC] > S [TCT] Coding Sequence Variant
A-kinase-interacting protein 1 isoform X1 XP_016873500.1:p.Ser85= S (Ser) > S (Ser) Synonymous Variant
Gene: DENND2B, DENN domain containing 2B (minus strand) : 2KB Upstream Variant
Molecule type Change Amino acid[Codon] SO Term
DENND2B transcript variant 1 NM_005418.4:c. N/A Upstream Transcript Variant
DENND2B transcript variant 4 NM_001376495.1:c. N/A N/A
DENND2B transcript variant 5 NM_001376496.1:c. N/A N/A
DENND2B transcript variant 6 NM_001376497.1:c. N/A N/A
DENND2B transcript variant 7 NM_001376498.1:c. N/A N/A
DENND2B transcript variant 8 NM_001376499.1:c. N/A N/A
DENND2B transcript variant 9 NM_001376500.1:c. N/A N/A
DENND2B transcript variant 10 NM_001376501.1:c. N/A N/A
DENND2B transcript variant 11 NM_001376502.1:c. N/A N/A
DENND2B transcript variant 12 NM_001376503.1:c. N/A N/A
DENND2B transcript variant 13 NM_001376504.1:c. N/A N/A
DENND2B transcript variant 14 NM_001376505.1:c. N/A N/A
DENND2B transcript variant 15 NM_001376506.1:c. N/A N/A
DENND2B transcript variant 2 NM_139157.3:c. N/A N/A
DENND2B transcript variant 3 NM_213618.2:c. N/A N/A
DENND2B transcript variant 16 NR_164814.1:n. N/A N/A
DENND2B transcript variant 17 NR_164815.1:n. N/A N/A
DENND2B transcript variant 18 NR_164816.1:n. N/A N/A
DENND2B transcript variant 19 NR_164817.1:n. N/A N/A
DENND2B transcript variant 20 NR_164818.1:n. N/A N/A
DENND2B transcript variant 21 NR_164819.1:n. N/A N/A
DENND2B transcript variant 22 NR_164820.1:n. N/A N/A
DENND2B transcript variant 23 NR_164821.1:n. N/A N/A
DENND2B transcript variant 24 NR_164822.1:n. N/A N/A
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= T
GRCh38.p14 chr 11 NC_000011.10:g.8912485= NC_000011.10:g.8912485C>T
GRCh37.p13 chr 11 NC_000011.9:g.8934032= NC_000011.9:g.8934032C>T
DENND2B RefSeqGene NG_029450.1:g.3467= NG_029450.1:g.3467G>A
AKIP1 RefSeqGene NG_030417.1:g.6332= NG_030417.1:g.6332C>T
AKIP1 transcript variant 1 NM_020642.4:c.255= NM_020642.4:c.255C>T
AKIP1 transcript variant 1 NM_020642.3:c.255= NM_020642.3:c.255C>T
AKIP1 transcript variant 5 NR_045417.2:n.516= NR_045417.2:n.516C>T
AKIP1 transcript variant 5 NR_045417.1:n.513= NR_045417.1:n.513C>T
AKIP1 transcript variant 3 NM_001206647.2:c.255= NM_001206647.2:c.255C>T
AKIP1 transcript variant 3 NM_001206647.1:c.255= NM_001206647.1:c.255C>T
AKIP1 transcript variant 1 NM_182901.3:c.255= NM_182901.3:c.255C>T
AKIP1 transcript variant 1 NM_182901.2:c.255= NM_182901.2:c.255C>T
AKIP1 transcript variant X1 XM_017018011.2:c.255= XM_017018011.2:c.255C>T
AKIP1 transcript variant X1 XM_017018011.1:c.255= XM_017018011.1:c.255C>T
C11orf17 transcript variant 1 NM_182901.1:c.255= NM_182901.1:c.255C>T
A-kinase-interacting protein 1 isoform a NP_065693.2:p.Ser85= NP_065693.2:p.Ser85=
A-kinase-interacting protein 1 isoform c NP_001193576.1:p.Ser85= NP_001193576.1:p.Ser85=
A-kinase-interacting protein 1 isoform X1 XP_016873500.1:p.Ser85= XP_016873500.1:p.Ser85=
AKIP1 transcript variant 2 NM_001206646.1:c.222+814= NM_001206646.1:c.222+814C>T
AKIP1 transcript variant 2 NM_001206646.2:c.222+814= NM_001206646.2:c.222+814C>T
AKIP1 transcript variant 4 NM_001206648.1:c.222+814= NM_001206648.1:c.222+814C>T
AKIP1 transcript variant 4 NM_001206648.2:c.222+814= NM_001206648.2:c.222+814C>T
AKIP1 transcript variant X2 XM_047427261.1:c.222+814= XM_047427261.1:c.222+814C>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

1 SubSNP, 2 Frequency submissions
No Submitter Submission ID Date (Build)
1 TOPMED ss4874658280 Apr 26, 2021 (155)
2 TopMed NC_000011.10 - 8912485 Apr 26, 2021 (155)
3 ALFA NC_000011.10 - 8912485 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
90203936, 9324110495, ss4874658280 NC_000011.10:8912484:C:T NC_000011.10:8912484:C:T (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1437374230

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top▲ Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d