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dbSNP Short Genetic Variations

Examples: rs268, BRCA1 and more Advanced search

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1485673566

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr5:55649306 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
A>T
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.00000 (0/10680, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
SLC38A9 : Missense Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 10680 A=1.00000 T=0.00000 1.0 0.0 0.0 N/A
European Sub 6962 A=1.0000 T=0.0000 1.0 0.0 0.0 N/A
African Sub 2294 A=1.0000 T=0.0000 1.0 0.0 0.0 N/A
African Others Sub 84 A=1.00 T=0.00 1.0 0.0 0.0 N/A
African American Sub 2210 A=1.0000 T=0.0000 1.0 0.0 0.0 N/A
Asian Sub 108 A=1.000 T=0.000 1.0 0.0 0.0 N/A
East Asian Sub 84 A=1.00 T=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 24 A=1.00 T=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 146 A=1.000 T=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 610 A=1.000 T=0.000 1.0 0.0 0.0 N/A
South Asian Sub 94 A=1.00 T=0.00 1.0 0.0 0.0 N/A
Other Sub 466 A=1.000 T=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
Allele Frequency Aggregator Total Global 10680 A=1.00000 T=0.00000
Allele Frequency Aggregator European Sub 6962 A=1.0000 T=0.0000
Allele Frequency Aggregator African Sub 2294 A=1.0000 T=0.0000
Allele Frequency Aggregator Latin American 2 Sub 610 A=1.000 T=0.000
Allele Frequency Aggregator Other Sub 466 A=1.000 T=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 A=1.000 T=0.000
Allele Frequency Aggregator Asian Sub 108 A=1.000 T=0.000
Allele Frequency Aggregator South Asian Sub 94 A=1.00 T=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 5 NC_000005.10:g.55649306A>T
GRCh37.p13 chr 5 NC_000005.9:g.54945134A>T
Gene: SLC38A9, solute carrier family 38 member 9 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
SLC38A9 transcript variant 3 NM_001258287.1:c.871+3223…

NM_001258287.1:c.871+3223T>A

 		N/A Intron Variant
SLC38A9 transcript variant 2 NM_001258286.1:c.772T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform 2 NP_001245215.1:p.Ser258Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant 4 NM_001282429.1:c.589T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform 4 NP_001269358.1:p.Ser197Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant 8 NM_001349384.1:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform 1 NP_001336313.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant 9 NM_001349385.1:c.766T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform 5 NP_001336314.1:p.Ser256Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant 6 NM_001349382.1:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform 1 NP_001336311.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant 7 NM_001349383.1:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform 1 NP_001336312.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant 1 NM_173514.4:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform 1 NP_775785.2:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant 5 NR_047649.1:n.1312T>A N/A Non Coding Transcript Variant
SLC38A9 transcript variant 10 NR_146165.1:n.1162T>A N/A Non Coding Transcript Variant
SLC38A9 transcript variant X9 XM_011543177.2:c.952+3223…

XM_011543177.2:c.952+3223T>A

 		N/A Intron Variant
SLC38A9 transcript variant X29 XM_011543180.2:c.758-3411…

XM_011543180.2:c.758-3411T>A

 		N/A Intron Variant
SLC38A9 transcript variant X28 XM_017009082.2:c.758-3411…

XM_017009082.2:c.758-3411T>A

 		N/A Intron Variant
SLC38A9 transcript variant X8 XM_024454369.2:c.952+3223…

XM_024454369.2:c.952+3223T>A

 		N/A Intron Variant
SLC38A9 transcript variant X10 XM_047416781.1:c.952+3223…

XM_047416781.1:c.952+3223T>A

 		N/A Intron Variant
SLC38A9 transcript variant X11 XM_047416782.1:c.952+3223…

XM_047416782.1:c.952+3223T>A

 		N/A Intron Variant
SLC38A9 transcript variant X12 XM_047416783.1:c.952+3223…

XM_047416783.1:c.952+3223T>A

 		N/A Intron Variant
SLC38A9 transcript variant X25 XM_047416792.1:c.781+3223…

XM_047416792.1:c.781+3223T>A

 		N/A Intron Variant
SLC38A9 transcript variant X30 XM_047416794.1:c.758-3411…

XM_047416794.1:c.758-3411T>A

 		N/A Intron Variant
SLC38A9 transcript variant X31 XM_047416795.1:c.758-3411…

XM_047416795.1:c.758-3411T>A

 		N/A Intron Variant
SLC38A9 transcript variant X37 XM_047416799.1:c.587-3411…

XM_047416799.1:c.587-3411T>A

 		N/A Intron Variant
SLC38A9 transcript variant X1 XM_047416778.1:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X1 XP_047272734.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X2 XM_011543174.2:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X1 XP_011541476.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X3 XM_006714539.4:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X1 XP_006714602.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X4 XM_017009077.2:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X2 XP_016864566.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X5 XM_047416779.1:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X2 XP_047272735.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X6 XM_047416780.1:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X2 XP_047272736.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X7 XM_011543176.2:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X2 XP_011541478.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X13 XM_017009078.3:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X4 XP_016864567.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X14 XM_047416784.1:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X4 XP_047272740.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X15 XM_011543178.2:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X4 XP_011541480.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X16 XM_047416785.1:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X4 XP_047272741.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X17 XM_047416786.1:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X4 XP_047272742.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X18 XM_047416787.1:c.766T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X5 XP_047272743.1:p.Ser256Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X19 XM_017009080.2:c.766T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X5 XP_016864569.1:p.Ser256Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X20 XM_047416788.1:c.766T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X5 XP_047272744.1:p.Ser256Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X22 XM_047416789.1:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X6 XP_047272745.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X23 XM_047416790.1:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X6 XP_047272746.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X24 XM_047416791.1:c.790T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X6 XP_047272747.1:p.Ser264Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X26 XM_017009081.2:c.766T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X8 XP_016864570.1:p.Ser256Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X27 XM_047416793.1:c.766T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X8 XP_047272749.1:p.Ser256Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X33 XM_011543183.2:c.595T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X10 XP_011541485.1:p.Ser199Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X34 XM_047416796.1:c.595T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X10 XP_047272752.1:p.Ser199Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X35 XM_047416797.1:c.595T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X10 XP_047272753.1:p.Ser199Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X36 XM_047416798.1:c.961T>A S [TCT] > T [ACT] Coding Sequence Variant
neutral amino acid transporter 9 isoform X11 XP_047272754.1:p.Ser321Thr S (Ser) > T (Thr) Missense Variant
SLC38A9 transcript variant X21 XR_007058582.1:n.1162T>A N/A Non Coding Transcript Variant
SLC38A9 transcript variant X32 XR_007058583.1:n.1162T>A N/A Non Coding Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement A= T
GRCh38.p14 chr 5 NC_000005.10:g.55649306= NC_000005.10:g.55649306A>T
GRCh37.p13 chr 5 NC_000005.9:g.54945134= NC_000005.9:g.54945134A>T
SLC38A9 transcript variant X3 XM_006714539.4:c.961= XM_006714539.4:c.961T>A
SLC38A9 transcript variant X2 XM_006714539.3:c.961= XM_006714539.3:c.961T>A
SLC38A9 transcript variant X5 XM_006714539.2:c.961= XM_006714539.2:c.961T>A
SLC38A9 transcript variant X3 XM_006714539.1:c.961= XM_006714539.1:c.961T>A
SLC38A9 transcript variant 1 NM_173514.4:c.961= NM_173514.4:c.961T>A
SLC38A9 transcript variant 1 NM_173514.3:c.961= NM_173514.3:c.961T>A
SLC38A9 transcript variant X13 XM_017009078.3:c.790= XM_017009078.3:c.790T>A
SLC38A9 transcript variant X8 XM_017009078.2:c.790= XM_017009078.2:c.790T>A
SLC38A9 transcript variant X10 XM_017009078.1:c.790= XM_017009078.1:c.790T>A
SLC38A9 transcript variant X2 XM_011543174.2:c.961= XM_011543174.2:c.961T>A
SLC38A9 transcript variant X1 XM_011543174.1:c.961= XM_011543174.1:c.961T>A
SLC38A9 transcript variant X7 XM_011543176.2:c.961= XM_011543176.2:c.961T>A
SLC38A9 transcript variant X3 XM_011543176.1:c.961= XM_011543176.1:c.961T>A
SLC38A9 transcript variant X15 XM_011543178.2:c.790= XM_011543178.2:c.790T>A
SLC38A9 transcript variant X7 XM_011543178.1:c.790= XM_011543178.1:c.790T>A
SLC38A9 transcript variant X19 XM_017009080.2:c.766= XM_017009080.2:c.766T>A
SLC38A9 transcript variant X9 XM_017009080.1:c.766= XM_017009080.1:c.766T>A
SLC38A9 transcript variant X4 XM_017009077.2:c.961= XM_017009077.2:c.961T>A
SLC38A9 transcript variant X4 XM_017009077.1:c.961= XM_017009077.1:c.961T>A
SLC38A9 transcript variant X33 XM_011543183.2:c.595= XM_011543183.2:c.595T>A
SLC38A9 transcript variant X17 XM_011543183.1:c.595= XM_011543183.1:c.595T>A
SLC38A9 transcript variant X26 XM_017009081.2:c.766= XM_017009081.2:c.766T>A
SLC38A9 transcript variant X11 XM_017009081.1:c.766= XM_017009081.1:c.766T>A
SLC38A9 transcript variant X1 XM_047416778.1:c.961= XM_047416778.1:c.961T>A
SLC38A9 transcript variant 6 NM_001349382.1:c.961= NM_001349382.1:c.961T>A
SLC38A9 transcript variant 7 NM_001349383.1:c.961= NM_001349383.1:c.961T>A
SLC38A9 transcript variant X6 XM_047416780.1:c.961= XM_047416780.1:c.961T>A
SLC38A9 transcript variant 2 NM_001258286.1:c.772= NM_001258286.1:c.772T>A
SLC38A9 transcript variant 5 NR_047649.1:n.1312= NR_047649.1:n.1312T>A
SLC38A9 transcript variant 8 NM_001349384.1:c.961= NM_001349384.1:c.961T>A
SLC38A9 transcript variant X14 XM_047416784.1:c.790= XM_047416784.1:c.790T>A
SLC38A9 transcript variant X18 XM_047416787.1:c.766= XM_047416787.1:c.766T>A
SLC38A9 transcript variant X20 XM_047416788.1:c.766= XM_047416788.1:c.766T>A
SLC38A9 transcript variant X5 XM_047416779.1:c.961= XM_047416779.1:c.961T>A
SLC38A9 transcript variant X23 XM_047416790.1:c.790= XM_047416790.1:c.790T>A
SLC38A9 transcript variant X17 XM_047416786.1:c.790= XM_047416786.1:c.790T>A
SLC38A9 transcript variant X27 XM_047416793.1:c.766= XM_047416793.1:c.766T>A
SLC38A9 transcript variant 10 NR_146165.1:n.1162= NR_146165.1:n.1162T>A
SLC38A9 transcript variant X16 XM_047416785.1:c.790= XM_047416785.1:c.790T>A
SLC38A9 transcript variant 4 NR_047650.1:n.1029= NR_047650.1:n.1029T>A
SLC38A9 transcript variant 4 NM_001282429.1:c.589= NM_001282429.1:c.589T>A
SLC38A9 transcript variant X24 XM_047416791.1:c.790= XM_047416791.1:c.790T>A
SLC38A9 transcript variant 9 NM_001349385.1:c.766= NM_001349385.1:c.766T>A
SLC38A9 transcript variant X35 XM_047416797.1:c.595= XM_047416797.1:c.595T>A
SLC38A9 transcript variant X22 XM_047416789.1:c.790= XM_047416789.1:c.790T>A
SLC38A9 transcript variant X34 XM_047416796.1:c.595= XM_047416796.1:c.595T>A
SLC38A9 transcript variant X21 XR_007058582.1:n.1162= XR_007058582.1:n.1162T>A
SLC38A9 transcript variant X36 XM_047416798.1:c.961= XM_047416798.1:c.961T>A
SLC38A9 transcript variant X32 XR_007058583.1:n.1162= XR_007058583.1:n.1162T>A
neutral amino acid transporter 9 isoform X1 XP_006714602.1:p.Ser321= XP_006714602.1:p.Ser321Thr
neutral amino acid transporter 9 isoform 1 NP_775785.2:p.Ser321= NP_775785.2:p.Ser321Thr
neutral amino acid transporter 9 isoform X4 XP_016864567.1:p.Ser264= XP_016864567.1:p.Ser264Thr
neutral amino acid transporter 9 isoform X1 XP_011541476.1:p.Ser321= XP_011541476.1:p.Ser321Thr
neutral amino acid transporter 9 isoform X2 XP_011541478.1:p.Ser321= XP_011541478.1:p.Ser321Thr
neutral amino acid transporter 9 isoform X4 XP_011541480.1:p.Ser264= XP_011541480.1:p.Ser264Thr
neutral amino acid transporter 9 isoform X5 XP_016864569.1:p.Ser256= XP_016864569.1:p.Ser256Thr
neutral amino acid transporter 9 isoform X2 XP_016864566.1:p.Ser321= XP_016864566.1:p.Ser321Thr
neutral amino acid transporter 9 isoform X10 XP_011541485.1:p.Ser199= XP_011541485.1:p.Ser199Thr
neutral amino acid transporter 9 isoform X8 XP_016864570.1:p.Ser256= XP_016864570.1:p.Ser256Thr
neutral amino acid transporter 9 isoform X1 XP_047272734.1:p.Ser321= XP_047272734.1:p.Ser321Thr
neutral amino acid transporter 9 isoform 1 NP_001336311.1:p.Ser321= NP_001336311.1:p.Ser321Thr
neutral amino acid transporter 9 isoform 1 NP_001336312.1:p.Ser321= NP_001336312.1:p.Ser321Thr
neutral amino acid transporter 9 isoform X2 XP_047272736.1:p.Ser321= XP_047272736.1:p.Ser321Thr
neutral amino acid transporter 9 isoform 2 NP_001245215.1:p.Ser258= NP_001245215.1:p.Ser258Thr
neutral amino acid transporter 9 isoform 1 NP_001336313.1:p.Ser321= NP_001336313.1:p.Ser321Thr
neutral amino acid transporter 9 isoform X4 XP_047272740.1:p.Ser264= XP_047272740.1:p.Ser264Thr
neutral amino acid transporter 9 isoform X5 XP_047272743.1:p.Ser256= XP_047272743.1:p.Ser256Thr
neutral amino acid transporter 9 isoform X5 XP_047272744.1:p.Ser256= XP_047272744.1:p.Ser256Thr
neutral amino acid transporter 9 isoform X2 XP_047272735.1:p.Ser321= XP_047272735.1:p.Ser321Thr
neutral amino acid transporter 9 isoform X6 XP_047272746.1:p.Ser264= XP_047272746.1:p.Ser264Thr
neutral amino acid transporter 9 isoform X4 XP_047272742.1:p.Ser264= XP_047272742.1:p.Ser264Thr
neutral amino acid transporter 9 isoform X8 XP_047272749.1:p.Ser256= XP_047272749.1:p.Ser256Thr
neutral amino acid transporter 9 isoform X4 XP_047272741.1:p.Ser264= XP_047272741.1:p.Ser264Thr
neutral amino acid transporter 9 isoform 4 NP_001269358.1:p.Ser197= NP_001269358.1:p.Ser197Thr
neutral amino acid transporter 9 isoform X6 XP_047272747.1:p.Ser264= XP_047272747.1:p.Ser264Thr
neutral amino acid transporter 9 isoform 5 NP_001336314.1:p.Ser256= NP_001336314.1:p.Ser256Thr
neutral amino acid transporter 9 isoform X10 XP_047272753.1:p.Ser199= XP_047272753.1:p.Ser199Thr
neutral amino acid transporter 9 isoform X6 XP_047272745.1:p.Ser264= XP_047272745.1:p.Ser264Thr
neutral amino acid transporter 9 isoform X10 XP_047272752.1:p.Ser199= XP_047272752.1:p.Ser199Thr
neutral amino acid transporter 9 isoform X11 XP_047272754.1:p.Ser321= XP_047272754.1:p.Ser321Thr
SLC38A9 transcript variant 3 NM_001258287.1:c.871+3223= NM_001258287.1:c.871+3223T>A
SLC38A9 transcript variant X9 XM_011543177.2:c.952+3223= XM_011543177.2:c.952+3223T>A
SLC38A9 transcript variant X29 XM_011543180.2:c.758-3411= XM_011543180.2:c.758-3411T>A
SLC38A9 transcript variant X28 XM_017009082.2:c.758-3411= XM_017009082.2:c.758-3411T>A
SLC38A9 transcript variant X8 XM_024454369.2:c.952+3223= XM_024454369.2:c.952+3223T>A
SLC38A9 transcript variant X10 XM_047416781.1:c.952+3223= XM_047416781.1:c.952+3223T>A
SLC38A9 transcript variant X11 XM_047416782.1:c.952+3223= XM_047416782.1:c.952+3223T>A
SLC38A9 transcript variant X12 XM_047416783.1:c.952+3223= XM_047416783.1:c.952+3223T>A
SLC38A9 transcript variant X25 XM_047416792.1:c.781+3223= XM_047416792.1:c.781+3223T>A
SLC38A9 transcript variant X30 XM_047416794.1:c.758-3411= XM_047416794.1:c.758-3411T>A
SLC38A9 transcript variant X31 XM_047416795.1:c.758-3411= XM_047416795.1:c.758-3411T>A
SLC38A9 transcript variant X37 XM_047416799.1:c.587-3411= XM_047416799.1:c.587-3411T>A
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Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

1 SubSNP, 1 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2735007990 Nov 08, 2017 (151)
2 ALFA NC_000005.10 - 55649306 Apr 26, 2021 (155)
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History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss2735007990 NC_000005.9:54945133:A:T NC_000005.10:55649305:A:T (self)
12135646933 NC_000005.10:55649305:A:T NC_000005.10:55649305:A:T (self)
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Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1485673566

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The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d