Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1489681010

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr9:89378821 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
G>A
Variation Type
SNV Single Nucleotide Variation
Frequency
A=0.000007 (1/140288, GnomAD)
A=0.00005 (1/19668, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
SEMA4D : Synonymous Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 19668 G=0.99995 A=0.00005 0.999898 0.0 0.000102 0
European Sub 13024 G=1.00000 A=0.00000 1.0 0.0 0.0 N/A
African Sub 2888 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
African Others Sub 92 G=1.00 A=0.00 1.0 0.0 0.0 N/A
African American Sub 2796 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
Asian Sub 164 G=1.000 A=0.000 1.0 0.0 0.0 N/A
East Asian Sub 110 G=1.000 A=0.000 1.0 0.0 0.0 N/A
Other Asian Sub 54 G=1.00 A=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 146 G=1.000 A=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 610 G=1.000 A=0.000 1.0 0.0 0.0 N/A
South Asian Sub 94 G=1.00 A=0.00 1.0 0.0 0.0 N/A
Other Sub 2742 G=0.9996 A=0.0004 0.999271 0.0 0.000729 0


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD - Genomes Global Study-wide 140288 G=0.999993 A=0.000007
gnomAD - Genomes European Sub 75956 G=1.00000 A=0.00000
gnomAD - Genomes African Sub 42062 G=1.00000 A=0.00000
gnomAD - Genomes American Sub 13662 G=0.99993 A=0.00007
gnomAD - Genomes Ashkenazi Jewish Sub 3320 G=1.0000 A=0.0000
gnomAD - Genomes East Asian Sub 3134 G=1.0000 A=0.0000
gnomAD - Genomes Other Sub 2154 G=1.0000 A=0.0000
Allele Frequency Aggregator Total Global 19668 G=0.99995 A=0.00005
Allele Frequency Aggregator European Sub 13024 G=1.00000 A=0.00000
Allele Frequency Aggregator African Sub 2888 G=1.0000 A=0.0000
Allele Frequency Aggregator Other Sub 2742 G=0.9996 A=0.0004
Allele Frequency Aggregator Latin American 2 Sub 610 G=1.000 A=0.000
Allele Frequency Aggregator Asian Sub 164 G=1.000 A=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 G=1.000 A=0.000
Allele Frequency Aggregator South Asian Sub 94 G=1.00 A=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 9 NC_000009.12:g.89378821G>A
GRCh37.p13 chr 9 NC_000009.11:g.91993736G>A
Gene: SEMA4D, semaphorin 4D (minus strand)
Molecule type Change Amino acid[Codon] SO Term
SEMA4D transcript variant 2 NM_001142287.2:c.1664-177…

NM_001142287.2:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant 7 NM_001371198.1:c.1664-177…

NM_001371198.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant 8 NM_001371199.1:c.1664-177…

NM_001371199.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant 9 NM_001371200.1:c.1664-177…

NM_001371200.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant 10 NM_001371201.1:c.1664-177…

NM_001371201.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant 11 NM_001371202.1:c.1664-177…

NM_001371202.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant 4 NM_001371195.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform 1 precursor NP_001358124.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant 5 NM_001371196.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform 1 precursor NP_001358125.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant 1 NM_006378.4:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform 1 precursor NP_006369.3:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant 6 NM_001371197.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform 1 precursor NP_001358126.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant 3 NM_001371194.2:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform 1 precursor NP_001358123.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant 12 NR_163884.1:n. N/A Intron Variant
SEMA4D transcript variant 13 NR_163885.1:n. N/A Intron Variant
SEMA4D transcript variant 14 NR_163886.1:n. N/A Intron Variant
SEMA4D transcript variant 15 NR_163887.1:n. N/A Intron Variant
SEMA4D transcript variant 16 NR_163888.1:n. N/A Intron Variant
SEMA4D transcript variant 17 NR_163889.1:n. N/A Intron Variant
SEMA4D transcript variant X24 XM_047422620.1:c.1664-177…

XM_047422620.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X25 XM_047422621.1:c.1664-177…

XM_047422621.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X26 XM_047422622.1:c.1664-177…

XM_047422622.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X27 XM_047422623.1:c.1664-177…

XM_047422623.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X28 XM_047422624.1:c.1664-177…

XM_047422624.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X29 XM_047422625.1:c.1664-177…

XM_047422625.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X30 XM_047422626.1:c.1664-177…

XM_047422626.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X31 XM_047422627.1:c.1664-177…

XM_047422627.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X32 XM_047422628.1:c.1664-177…

XM_047422628.1:c.1664-1770C>T

N/A Intron Variant
SEMA4D transcript variant X33 XM_047422629.1:c.1446+754…

XM_047422629.1:c.1446+7546C>T

N/A Intron Variant
SEMA4D transcript variant X34 XM_047422630.1:c. N/A Genic Downstream Transcript Variant
SEMA4D transcript variant X37 XM_047422631.1:c. N/A Genic Downstream Transcript Variant
SEMA4D transcript variant X36 XM_047422632.1:c. N/A Genic Downstream Transcript Variant
SEMA4D transcript variant X35 XM_047422633.1:c. N/A Genic Downstream Transcript Variant
SEMA4D transcript variant X38 XM_047422634.1:c. N/A Genic Downstream Transcript Variant
SEMA4D transcript variant X1 XM_047422606.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278562.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X2 XM_047422607.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278563.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X3 XM_011518133.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516435.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X4 XM_011518123.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516425.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X5 XM_011518134.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516436.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X9 XM_011518125.2:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516427.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X11 XM_011518130.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516432.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X6 XM_011518127.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516429.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X7 XM_017014193.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_016869682.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X8 XM_011518124.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516426.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X16 XM_011518131.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516433.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X10 XM_047422609.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278565.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X14 XM_011518128.3:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516430.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X39 XM_047422610.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278566.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X17 XM_047422611.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278567.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X40 XM_047422612.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278568.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X41 XM_047422613.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278569.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X12 XM_047422614.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278570.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X20 XM_047422615.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278571.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X13 XM_017014194.2:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_016869683.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X15 XM_047422617.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278573.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X18 XM_047422618.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278574.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X19 XM_017014198.2:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_016869687.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X21 XM_017014195.2:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_016869684.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X22 XM_011518129.2:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_011516431.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
SEMA4D transcript variant X23 XM_047422619.1:c.2472C>T S [AGC] > S [AGT] Coding Sequence Variant
semaphorin-4D isoform X1 XP_047278575.1:p.Ser824= S (Ser) > S (Ser) Synonymous Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement G= A
GRCh38.p14 chr 9 NC_000009.12:g.89378821= NC_000009.12:g.89378821G>A
GRCh37.p13 chr 9 NC_000009.11:g.91993736= NC_000009.11:g.91993736G>A
SEMA4D transcript variant 1 NM_006378.4:c.2472= NM_006378.4:c.2472C>T
SEMA4D transcript variant 1 NM_006378.3:c.2472= NM_006378.3:c.2472C>T
SEMA4D transcript variant X7 XM_017014193.3:c.2472= XM_017014193.3:c.2472C>T
SEMA4D transcript variant X3 XM_017014193.2:c.2472= XM_017014193.2:c.2472C>T
SEMA4D transcript variant X3 XM_017014193.1:c.2472= XM_017014193.1:c.2472C>T
SEMA4D transcript variant X8 XM_011518124.3:c.2472= XM_011518124.3:c.2472C>T
SEMA4D transcript variant X1 XM_011518124.2:c.2472= XM_011518124.2:c.2472C>T
SEMA4D transcript variant X2 XM_011518124.1:c.2472= XM_011518124.1:c.2472C>T
SEMA4D transcript variant X4 XM_011518123.3:c.2472= XM_011518123.3:c.2472C>T
SEMA4D transcript variant X2 XM_011518123.2:c.2472= XM_011518123.2:c.2472C>T
SEMA4D transcript variant X1 XM_011518123.1:c.2472= XM_011518123.1:c.2472C>T
SEMA4D transcript variant X6 XM_011518127.3:c.2472= XM_011518127.3:c.2472C>T
SEMA4D transcript variant X6 XM_011518127.2:c.2472= XM_011518127.2:c.2472C>T
SEMA4D transcript variant X5 XM_011518127.1:c.2472= XM_011518127.1:c.2472C>T
SEMA4D transcript variant X14 XM_011518128.3:c.2472= XM_011518128.3:c.2472C>T
SEMA4D transcript variant X7 XM_011518128.2:c.2472= XM_011518128.2:c.2472C>T
SEMA4D transcript variant X6 XM_011518128.1:c.2472= XM_011518128.1:c.2472C>T
SEMA4D transcript variant X3 XM_011518133.3:c.2472= XM_011518133.3:c.2472C>T
SEMA4D transcript variant X10 XM_011518133.2:c.2472= XM_011518133.2:c.2472C>T
SEMA4D transcript variant X11 XM_011518133.1:c.2472= XM_011518133.1:c.2472C>T
SEMA4D transcript variant X11 XM_011518130.3:c.2472= XM_011518130.3:c.2472C>T
SEMA4D transcript variant X13 XM_011518130.2:c.2472= XM_011518130.2:c.2472C>T
SEMA4D transcript variant X8 XM_011518130.1:c.2472= XM_011518130.1:c.2472C>T
SEMA4D transcript variant X5 XM_011518134.3:c.2472= XM_011518134.3:c.2472C>T
SEMA4D transcript variant X17 XM_011518134.2:c.2472= XM_011518134.2:c.2472C>T
SEMA4D transcript variant X12 XM_011518134.1:c.2472= XM_011518134.1:c.2472C>T
SEMA4D transcript variant X16 XM_011518131.3:c.2472= XM_011518131.3:c.2472C>T
SEMA4D transcript variant X14 XM_011518131.2:c.2472= XM_011518131.2:c.2472C>T
SEMA4D transcript variant X9 XM_011518131.1:c.2472= XM_011518131.1:c.2472C>T
SEMA4D transcript variant X13 XM_017014194.2:c.2472= XM_017014194.2:c.2472C>T
SEMA4D transcript variant X5 XM_017014194.1:c.2472= XM_017014194.1:c.2472C>T
SEMA4D transcript variant X21 XM_017014195.2:c.2472= XM_017014195.2:c.2472C>T
SEMA4D transcript variant X9 XM_017014195.1:c.2472= XM_017014195.1:c.2472C>T
SEMA4D transcript variant X9 XM_011518125.2:c.2472= XM_011518125.2:c.2472C>T
SEMA4D transcript variant X4 XM_011518125.1:c.2472= XM_011518125.1:c.2472C>T
SEMA4D transcript variant X19 XM_017014198.2:c.2472= XM_017014198.2:c.2472C>T
SEMA4D transcript variant X16 XM_017014198.1:c.2472= XM_017014198.1:c.2472C>T
SEMA4D transcript variant 3 NM_001371194.2:c.2472= NM_001371194.2:c.2472C>T
SEMA4D transcript variant 3 NM_001371194.1:c.2472= NM_001371194.1:c.2472C>T
SEMA4D transcript variant X22 XM_011518129.2:c.2472= XM_011518129.2:c.2472C>T
SEMA4D transcript variant X8 XM_011518129.1:c.2472= XM_011518129.1:c.2472C>T
SEMA4D transcript variant X18 XM_047422618.1:c.2472= XM_047422618.1:c.2472C>T
SEMA4D transcript variant X40 XM_047422612.1:c.2472= XM_047422612.1:c.2472C>T
SEMA4D transcript variant X39 XM_047422610.1:c.2472= XM_047422610.1:c.2472C>T
SEMA4D transcript variant X41 XM_047422613.1:c.2472= XM_047422613.1:c.2472C>T
SEMA4D transcript variant X17 XM_047422611.1:c.2472= XM_047422611.1:c.2472C>T
SEMA4D transcript variant X10 XM_047422609.1:c.2472= XM_047422609.1:c.2472C>T
SEMA4D transcript variant 5 NM_001371196.1:c.2472= NM_001371196.1:c.2472C>T
SEMA4D transcript variant X15 XM_047422617.1:c.2472= XM_047422617.1:c.2472C>T
SEMA4D transcript variant X1 XM_047422606.1:c.2472= XM_047422606.1:c.2472C>T
SEMA4D transcript variant 6 NM_001371197.1:c.2472= NM_001371197.1:c.2472C>T
SEMA4D transcript variant X12 XM_047422614.1:c.2472= XM_047422614.1:c.2472C>T
SEMA4D transcript variant X2 XM_047422607.1:c.2472= XM_047422607.1:c.2472C>T
SEMA4D transcript variant 4 NM_001371195.1:c.2472= NM_001371195.1:c.2472C>T
SEMA4D transcript variant X23 XM_047422619.1:c.2472= XM_047422619.1:c.2472C>T
SEMA4D transcript variant X20 XM_047422615.1:c.2472= XM_047422615.1:c.2472C>T
semaphorin-4D isoform 1 precursor NP_006369.3:p.Ser824= NP_006369.3:p.Ser824=
semaphorin-4D isoform X1 XP_016869682.1:p.Ser824= XP_016869682.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516426.1:p.Ser824= XP_011516426.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516425.1:p.Ser824= XP_011516425.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516429.1:p.Ser824= XP_011516429.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516430.1:p.Ser824= XP_011516430.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516435.1:p.Ser824= XP_011516435.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516432.1:p.Ser824= XP_011516432.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516436.1:p.Ser824= XP_011516436.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516433.1:p.Ser824= XP_011516433.1:p.Ser824=
semaphorin-4D isoform X1 XP_016869683.1:p.Ser824= XP_016869683.1:p.Ser824=
semaphorin-4D isoform X1 XP_016869684.1:p.Ser824= XP_016869684.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516427.1:p.Ser824= XP_011516427.1:p.Ser824=
semaphorin-4D isoform X1 XP_016869687.1:p.Ser824= XP_016869687.1:p.Ser824=
semaphorin-4D isoform 1 precursor NP_001358123.1:p.Ser824= NP_001358123.1:p.Ser824=
semaphorin-4D isoform X1 XP_011516431.1:p.Ser824= XP_011516431.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278574.1:p.Ser824= XP_047278574.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278568.1:p.Ser824= XP_047278568.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278566.1:p.Ser824= XP_047278566.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278569.1:p.Ser824= XP_047278569.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278567.1:p.Ser824= XP_047278567.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278565.1:p.Ser824= XP_047278565.1:p.Ser824=
semaphorin-4D isoform 1 precursor NP_001358125.1:p.Ser824= NP_001358125.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278573.1:p.Ser824= XP_047278573.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278562.1:p.Ser824= XP_047278562.1:p.Ser824=
semaphorin-4D isoform 1 precursor NP_001358126.1:p.Ser824= NP_001358126.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278570.1:p.Ser824= XP_047278570.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278563.1:p.Ser824= XP_047278563.1:p.Ser824=
semaphorin-4D isoform 1 precursor NP_001358124.1:p.Ser824= NP_001358124.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278575.1:p.Ser824= XP_047278575.1:p.Ser824=
semaphorin-4D isoform X1 XP_047278571.1:p.Ser824= XP_047278571.1:p.Ser824=
SEMA4D transcript variant 2 NM_001142287.1:c.1664-1770= NM_001142287.1:c.1664-1770C>T
SEMA4D transcript variant 2 NM_001142287.2:c.1664-1770= NM_001142287.2:c.1664-1770C>T
SEMA4D transcript variant 7 NM_001371198.1:c.1664-1770= NM_001371198.1:c.1664-1770C>T
SEMA4D transcript variant 8 NM_001371199.1:c.1664-1770= NM_001371199.1:c.1664-1770C>T
SEMA4D transcript variant 9 NM_001371200.1:c.1664-1770= NM_001371200.1:c.1664-1770C>T
SEMA4D transcript variant 10 NM_001371201.1:c.1664-1770= NM_001371201.1:c.1664-1770C>T
SEMA4D transcript variant 11 NM_001371202.1:c.1664-1770= NM_001371202.1:c.1664-1770C>T
SEMA4D transcript variant X24 XM_047422620.1:c.1664-1770= XM_047422620.1:c.1664-1770C>T
SEMA4D transcript variant X25 XM_047422621.1:c.1664-1770= XM_047422621.1:c.1664-1770C>T
SEMA4D transcript variant X26 XM_047422622.1:c.1664-1770= XM_047422622.1:c.1664-1770C>T
SEMA4D transcript variant X27 XM_047422623.1:c.1664-1770= XM_047422623.1:c.1664-1770C>T
SEMA4D transcript variant X28 XM_047422624.1:c.1664-1770= XM_047422624.1:c.1664-1770C>T
SEMA4D transcript variant X29 XM_047422625.1:c.1664-1770= XM_047422625.1:c.1664-1770C>T
SEMA4D transcript variant X30 XM_047422626.1:c.1664-1770= XM_047422626.1:c.1664-1770C>T
SEMA4D transcript variant X31 XM_047422627.1:c.1664-1770= XM_047422627.1:c.1664-1770C>T
SEMA4D transcript variant X32 XM_047422628.1:c.1664-1770= XM_047422628.1:c.1664-1770C>T
SEMA4D transcript variant X33 XM_047422629.1:c.1446+7546= XM_047422629.1:c.1446+7546C>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

2 SubSNP, 2 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2737695827 Nov 08, 2017 (151)
2 GNOMAD ss4205252511 Apr 26, 2021 (155)
3 gnomAD - Genomes NC_000009.12 - 89378821 Apr 26, 2021 (155)
4 ALFA NC_000009.12 - 89378821 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss2737695827 NC_000009.11:91993735:G:A NC_000009.12:89378820:G:A (self)
330681093, 9539967873, ss4205252511 NC_000009.12:89378820:G:A NC_000009.12:89378820:G:A (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1489681010

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d