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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1489958715

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr14:71723810 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
G>A
Variation Type
SNV Single Nucleotide Variation
Frequency
A=0.000004 (1/264690, TOPMED)
A=0.000008 (2/248940, GnomAD_exome)
A=0.000007 (1/140174, GnomAD) (+ 3 more)
A=0.00004 (1/28258, 14KJPN)
A=0.00006 (1/16760, 8.3KJPN)
A=0.00000 (0/10680, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
SIPA1L1 : Missense Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 10680 G=1.00000 A=0.00000 1.0 0.0 0.0 N/A
European Sub 6962 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
African Sub 2294 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
African Others Sub 84 G=1.00 A=0.00 1.0 0.0 0.0 N/A
African American Sub 2210 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
Asian Sub 108 G=1.000 A=0.000 1.0 0.0 0.0 N/A
East Asian Sub 84 G=1.00 A=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 24 G=1.00 A=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 146 G=1.000 A=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 610 G=1.000 A=0.000 1.0 0.0 0.0 N/A
South Asian Sub 94 G=1.00 A=0.00 1.0 0.0 0.0 N/A
Other Sub 466 G=1.000 A=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 G=0.999996 A=0.000004
gnomAD - Exomes Global Study-wide 248940 G=0.999992 A=0.000008
gnomAD - Exomes European Sub 132896 G=0.999992 A=0.000008
gnomAD - Exomes Asian Sub 49008 G=1.00000 A=0.00000
gnomAD - Exomes American Sub 34592 G=0.99997 A=0.00003
gnomAD - Exomes African Sub 16256 G=1.00000 A=0.00000
gnomAD - Exomes Ashkenazi Jewish Sub 10066 G=1.00000 A=0.00000
gnomAD - Exomes Other Sub 6122 G=1.0000 A=0.0000
gnomAD - Genomes Global Study-wide 140174 G=0.999993 A=0.000007
gnomAD - Genomes European Sub 75922 G=1.00000 A=0.00000
gnomAD - Genomes African Sub 42002 G=0.99998 A=0.00002
gnomAD - Genomes American Sub 13646 G=1.00000 A=0.00000
gnomAD - Genomes Ashkenazi Jewish Sub 3322 G=1.0000 A=0.0000
gnomAD - Genomes East Asian Sub 3130 G=1.0000 A=0.0000
gnomAD - Genomes Other Sub 2152 G=1.0000 A=0.0000
14KJPN JAPANESE Study-wide 28258 G=0.99996 A=0.00004
8.3KJPN JAPANESE Study-wide 16760 G=0.99994 A=0.00006
Allele Frequency Aggregator Total Global 10680 G=1.00000 A=0.00000
Allele Frequency Aggregator European Sub 6962 G=1.0000 A=0.0000
Allele Frequency Aggregator African Sub 2294 G=1.0000 A=0.0000
Allele Frequency Aggregator Latin American 2 Sub 610 G=1.000 A=0.000
Allele Frequency Aggregator Other Sub 466 G=1.000 A=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 G=1.000 A=0.000
Allele Frequency Aggregator Asian Sub 108 G=1.000 A=0.000
Allele Frequency Aggregator South Asian Sub 94 G=1.00 A=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 14 NC_000014.9:g.71723810G>A
GRCh37.p13 chr 14 NC_000014.8:g.72190527G>A
Gene: SIPA1L1, signal induced proliferation associated 1 like 1 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
SIPA1L1 transcript variant 5 NM_001354285.2:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 1 NP_001341214.1:p.Ala1479T…

NP_001341214.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 6 NM_001354286.2:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001341215.1:p.Ala1458T…

NP_001341215.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 3 NM_001284246.2:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001271175.1:p.Ala1458T…

NP_001271175.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 4 NM_001284247.3:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 4 NP_001271176.1:p.Ala1479T…

NP_001271176.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 8 NM_001354288.2:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001341217.1:p.Ala1458T…

NP_001341217.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 1 NM_015556.4:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 1 NP_056371.1:p.Ala1479Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 2 NM_001284245.3:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 2 NP_001271174.1:p.Ala1458T…

NP_001271174.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 9 NM_001354289.2:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 5 NP_001341218.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 7 NM_001354287.2:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001341216.1:p.Ala1458T…

NP_001341216.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant 10 NM_001386936.1:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform 2 NP_001373865.1:p.Ala1458T…

NP_001373865.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X1 XM_005267516.5:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_005267573.1:p.Ala1479T…

XP_005267573.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X2 XM_047431209.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287165.1:p.Ala1479T…

XP_047287165.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X3 XM_047431211.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287167.1:p.Ala1479T…

XP_047287167.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X4 XM_047431212.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287168.1:p.Ala1479T…

XP_047287168.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X5 XM_047431213.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287169.1:p.Ala1479T…

XP_047287169.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X6 XM_047431214.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287170.1:p.Ala1479T…

XP_047287170.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X7 XM_047431215.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287171.1:p.Ala1479T…

XP_047287171.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X8 XM_047431216.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287172.1:p.Ala1479T…

XP_047287172.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X9 XM_047431217.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287173.1:p.Ala1479T…

XP_047287173.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X10 XM_047431218.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287174.1:p.Ala1479T…

XP_047287174.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X11 XM_047431219.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287175.1:p.Ala1479T…

XP_047287175.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X12 XM_047431220.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287176.1:p.Ala1479T…

XP_047287176.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X13 XM_047431222.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287178.1:p.Ala1479T…

XP_047287178.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X14 XM_047431223.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287179.1:p.Ala1479T…

XP_047287179.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X15 XM_047431224.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287180.1:p.Ala1479T…

XP_047287180.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X16 XM_047431225.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287181.1:p.Ala1479T…

XP_047287181.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X17 XM_047431226.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287182.1:p.Ala1479T…

XP_047287182.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X18 XM_047431227.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287183.1:p.Ala1479T…

XP_047287183.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X19 XM_047431228.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287184.1:p.Ala1479T…

XP_047287184.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X20 XM_024449529.2:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_024305297.1:p.Ala1479T…

XP_024305297.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X21 XM_047431229.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287185.1:p.Ala1479T…

XP_047287185.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X22 XM_011536632.2:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_011534934.1:p.Ala1479T…

XP_011534934.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X23 XM_047431231.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287187.1:p.Ala1479T…

XP_047287187.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X24 XM_047431232.1:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X2 XP_047287188.1:p.Ala1479T…

XP_047287188.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X25 XM_017021185.2:c.4435G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X2 XP_016876674.1:p.Ala1479T…

XP_016876674.1:p.Ala1479Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X26 XM_047431233.1:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X3 XP_047287189.1:p.Ala1458T…

XP_047287189.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X27 XM_047431234.1:c.4372G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X4 XP_047287190.1:p.Ala1458T…

XP_047287190.1:p.Ala1458Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X28 XM_047431235.1:c.4288G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X5 XP_047287191.1:p.Ala1430T…

XP_047287191.1:p.Ala1430Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X29 XM_047431236.1:c.4225G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X6 XP_047287192.1:p.Ala1409T…

XP_047287192.1:p.Ala1409Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X30 XM_047431237.1:c.4225G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X7 XP_047287193.1:p.Ala1409T…

XP_047287193.1:p.Ala1409Thr

A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X31 XM_017021198.2:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_016876687.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X32 XM_047431238.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287194.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X33 XM_047431239.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287195.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X34 XM_047431240.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287196.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X35 XM_047431241.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287197.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X36 XM_047431242.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287198.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X37 XM_047431243.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287199.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X38 XM_047431244.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287200.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X39 XM_047431245.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287201.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X40 XM_047431246.1:c.2953G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287202.1:p.Ala985Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X41 XM_047431247.1:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287203.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X42 XM_047431248.1:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287204.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X43 XM_047431249.1:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287205.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X44 XM_047431250.1:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287206.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X45 XM_047431251.1:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287207.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X46 XM_047431252.1:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X10 XP_047287208.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X47 XM_047431253.1:c.2890G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X10 XP_047287209.1:p.Ala964Thr A (Ala) > T (Thr) Missense Variant
SIPA1L1 transcript variant X48 XM_011536638.3:c.2860G>A A [GCT] > T [ACT] Coding Sequence Variant
signal-induced proliferation-associated 1-like protein 1 isoform X11 XP_011534940.1:p.Ala954Thr A (Ala) > T (Thr) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement G= A
GRCh38.p14 chr 14 NC_000014.9:g.71723810= NC_000014.9:g.71723810G>A
GRCh37.p13 chr 14 NC_000014.8:g.72190527= NC_000014.8:g.72190527G>A
SIPA1L1 transcript variant X1 XM_005267516.5:c.4435= XM_005267516.5:c.4435G>A
SIPA1L1 transcript variant X11 XM_005267516.4:c.4435= XM_005267516.4:c.4435G>A
SIPA1L1 transcript variant X8 XM_005267516.3:c.4435= XM_005267516.3:c.4435G>A
SIPA1L1 transcript variant X3 XM_005267516.2:c.4435= XM_005267516.2:c.4435G>A
SIPA1L1 transcript variant X3 XM_005267516.1:c.4435= XM_005267516.1:c.4435G>A
SIPA1L1 transcript variant 1 NM_015556.4:c.4435= NM_015556.4:c.4435G>A
SIPA1L1 transcript variant 1 NM_015556.3:c.4435= NM_015556.3:c.4435G>A
SIPA1L1 transcript variant 1 NM_015556.2:c.4435= NM_015556.2:c.4435G>A
SIPA1L1 transcript NM_015556.1:c.4435= NM_015556.1:c.4435G>A
SIPA1L1 transcript variant 4 NM_001284247.3:c.4435= NM_001284247.3:c.4435G>A
SIPA1L1 transcript variant 4 NM_001284247.2:c.4435= NM_001284247.2:c.4435G>A
SIPA1L1 transcript variant 4 NM_001284247.1:c.4435= NM_001284247.1:c.4435G>A
SIPA1L1 transcript variant 2 NM_001284245.3:c.4372= NM_001284245.3:c.4372G>A
SIPA1L1 transcript variant 2 NM_001284245.2:c.4372= NM_001284245.2:c.4372G>A
SIPA1L1 transcript variant 2 NM_001284245.1:c.4372= NM_001284245.1:c.4372G>A
SIPA1L1 transcript variant X48 XM_011536638.3:c.2860= XM_011536638.3:c.2860G>A
SIPA1L1 transcript variant X23 XM_011536638.2:c.2860= XM_011536638.2:c.2860G>A
SIPA1L1 transcript variant X14 XM_011536638.1:c.2860= XM_011536638.1:c.2860G>A
SIPA1L1 transcript variant X22 XM_011536632.2:c.4435= XM_011536632.2:c.4435G>A
SIPA1L1 transcript variant X7 XM_011536632.1:c.4435= XM_011536632.1:c.4435G>A
SIPA1L1 transcript variant X25 XM_017021185.2:c.4435= XM_017021185.2:c.4435G>A
SIPA1L1 transcript variant X13 XM_017021185.1:c.4435= XM_017021185.1:c.4435G>A
SIPA1L1 transcript variant 3 NM_001284246.2:c.4372= NM_001284246.2:c.4372G>A
SIPA1L1 transcript variant 3 NM_001284246.1:c.4372= NM_001284246.1:c.4372G>A
SIPA1L1 transcript variant X20 XM_024449529.2:c.4435= XM_024449529.2:c.4435G>A
SIPA1L1 transcript variant X6 XM_024449529.1:c.4435= XM_024449529.1:c.4435G>A
SIPA1L1 transcript variant 6 NM_001354286.2:c.4372= NM_001354286.2:c.4372G>A
SIPA1L1 transcript variant 6 NM_001354286.1:c.4372= NM_001354286.1:c.4372G>A
SIPA1L1 transcript variant 5 NM_001354285.2:c.4435= NM_001354285.2:c.4435G>A
SIPA1L1 transcript variant 5 NM_001354285.1:c.4435= NM_001354285.1:c.4435G>A
SIPA1L1 transcript variant 8 NM_001354288.2:c.4372= NM_001354288.2:c.4372G>A
SIPA1L1 transcript variant 8 NM_001354288.1:c.4372= NM_001354288.1:c.4372G>A
SIPA1L1 transcript variant 7 NM_001354287.2:c.4372= NM_001354287.2:c.4372G>A
SIPA1L1 transcript variant 7 NM_001354287.1:c.4372= NM_001354287.1:c.4372G>A
SIPA1L1 transcript variant 9 NM_001354289.2:c.2890= NM_001354289.2:c.2890G>A
SIPA1L1 transcript variant 9 NM_001354289.1:c.2890= NM_001354289.1:c.2890G>A
SIPA1L1 transcript variant X31 XM_017021198.2:c.2953= XM_017021198.2:c.2953G>A
SIPA1L1 transcript variant X20 XM_017021198.1:c.2953= XM_017021198.1:c.2953G>A
SIPA1L1 transcript variant X12 XM_047431220.1:c.4435= XM_047431220.1:c.4435G>A
SIPA1L1 transcript variant X6 XM_047431214.1:c.4435= XM_047431214.1:c.4435G>A
SIPA1L1 transcript variant X7 XM_047431215.1:c.4435= XM_047431215.1:c.4435G>A
SIPA1L1 transcript variant X5 XM_047431213.1:c.4435= XM_047431213.1:c.4435G>A
SIPA1L1 transcript variant X17 XM_047431226.1:c.4435= XM_047431226.1:c.4435G>A
SIPA1L1 transcript variant X4 XM_047431212.1:c.4435= XM_047431212.1:c.4435G>A
SIPA1L1 transcript variant X18 XM_047431227.1:c.4435= XM_047431227.1:c.4435G>A
SIPA1L1 transcript variant X3 XM_047431211.1:c.4435= XM_047431211.1:c.4435G>A
SIPA1L1 transcript variant X24 XM_047431232.1:c.4435= XM_047431232.1:c.4435G>A
SIPA1L1 transcript variant X19 XM_047431228.1:c.4435= XM_047431228.1:c.4435G>A
SIPA1L1 transcript variant X13 XM_047431222.1:c.4435= XM_047431222.1:c.4435G>A
SIPA1L1 transcript variant X26 XM_047431233.1:c.4372= XM_047431233.1:c.4372G>A
SIPA1L1 transcript variant X27 XM_047431234.1:c.4372= XM_047431234.1:c.4372G>A
SIPA1L1 transcript variant X16 XM_047431225.1:c.4435= XM_047431225.1:c.4435G>A
SIPA1L1 transcript variant X28 XM_047431235.1:c.4288= XM_047431235.1:c.4288G>A
SIPA1L1 transcript variant X29 XM_047431236.1:c.4225= XM_047431236.1:c.4225G>A
SIPA1L1 transcript variant X30 XM_047431237.1:c.4225= XM_047431237.1:c.4225G>A
SIPA1L1 transcript variant X8 XM_047431216.1:c.4435= XM_047431216.1:c.4435G>A
SIPA1L1 transcript variant X9 XM_047431217.1:c.4435= XM_047431217.1:c.4435G>A
SIPA1L1 transcript variant X21 XM_047431229.1:c.4435= XM_047431229.1:c.4435G>A
SIPA1L1 transcript variant X14 XM_047431223.1:c.4435= XM_047431223.1:c.4435G>A
SIPA1L1 transcript variant X10 XM_047431218.1:c.4435= XM_047431218.1:c.4435G>A
SIPA1L1 transcript variant X2 XM_047431209.1:c.4435= XM_047431209.1:c.4435G>A
SIPA1L1 transcript variant X15 XM_047431224.1:c.4435= XM_047431224.1:c.4435G>A
SIPA1L1 transcript variant X11 XM_047431219.1:c.4435= XM_047431219.1:c.4435G>A
SIPA1L1 transcript variant X34 XM_047431240.1:c.2953= XM_047431240.1:c.2953G>A
SIPA1L1 transcript variant X23 XM_047431231.1:c.4435= XM_047431231.1:c.4435G>A
SIPA1L1 transcript variant 10 NM_001386936.1:c.4372= NM_001386936.1:c.4372G>A
SIPA1L1 transcript variant X38 XM_047431244.1:c.2953= XM_047431244.1:c.2953G>A
SIPA1L1 transcript variant X42 XM_047431248.1:c.2890= XM_047431248.1:c.2890G>A
SIPA1L1 transcript variant X35 XM_047431241.1:c.2953= XM_047431241.1:c.2953G>A
SIPA1L1 transcript variant X44 XM_047431250.1:c.2890= XM_047431250.1:c.2890G>A
SIPA1L1 transcript variant X45 XM_047431251.1:c.2890= XM_047431251.1:c.2890G>A
SIPA1L1 transcript variant X33 XM_047431239.1:c.2953= XM_047431239.1:c.2953G>A
SIPA1L1 transcript variant X37 XM_047431243.1:c.2953= XM_047431243.1:c.2953G>A
SIPA1L1 transcript variant X39 XM_047431245.1:c.2953= XM_047431245.1:c.2953G>A
SIPA1L1 transcript variant X32 XM_047431238.1:c.2953= XM_047431238.1:c.2953G>A
SIPA1L1 transcript variant X47 XM_047431253.1:c.2890= XM_047431253.1:c.2890G>A
SIPA1L1 transcript variant X40 XM_047431246.1:c.2953= XM_047431246.1:c.2953G>A
SIPA1L1 transcript variant X36 XM_047431242.1:c.2953= XM_047431242.1:c.2953G>A
SIPA1L1 transcript variant X41 XM_047431247.1:c.2890= XM_047431247.1:c.2890G>A
SIPA1L1 transcript variant X43 XM_047431249.1:c.2890= XM_047431249.1:c.2890G>A
SIPA1L1 transcript variant X46 XM_047431252.1:c.2890= XM_047431252.1:c.2890G>A
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_005267573.1:p.Ala1479= XP_005267573.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform 1 NP_056371.1:p.Ala1479= NP_056371.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform 4 NP_001271176.1:p.Ala1479= NP_001271176.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform 2 NP_001271174.1:p.Ala1458= NP_001271174.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform X11 XP_011534940.1:p.Ala954= XP_011534940.1:p.Ala954Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_011534934.1:p.Ala1479= XP_011534934.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X2 XP_016876674.1:p.Ala1479= XP_016876674.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001271175.1:p.Ala1458= NP_001271175.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_024305297.1:p.Ala1479= XP_024305297.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001341215.1:p.Ala1458= NP_001341215.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform 1 NP_001341214.1:p.Ala1479= NP_001341214.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001341217.1:p.Ala1458= NP_001341217.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform 3 NP_001341216.1:p.Ala1458= NP_001341216.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform 5 NP_001341218.1:p.Ala964= NP_001341218.1:p.Ala964Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_016876687.1:p.Ala985= XP_016876687.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287176.1:p.Ala1479= XP_047287176.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287170.1:p.Ala1479= XP_047287170.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287171.1:p.Ala1479= XP_047287171.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287169.1:p.Ala1479= XP_047287169.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287182.1:p.Ala1479= XP_047287182.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287168.1:p.Ala1479= XP_047287168.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287183.1:p.Ala1479= XP_047287183.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287167.1:p.Ala1479= XP_047287167.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X2 XP_047287188.1:p.Ala1479= XP_047287188.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287184.1:p.Ala1479= XP_047287184.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287178.1:p.Ala1479= XP_047287178.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X3 XP_047287189.1:p.Ala1458= XP_047287189.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform X4 XP_047287190.1:p.Ala1458= XP_047287190.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287181.1:p.Ala1479= XP_047287181.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X5 XP_047287191.1:p.Ala1430= XP_047287191.1:p.Ala1430Thr
signal-induced proliferation-associated 1-like protein 1 isoform X6 XP_047287192.1:p.Ala1409= XP_047287192.1:p.Ala1409Thr
signal-induced proliferation-associated 1-like protein 1 isoform X7 XP_047287193.1:p.Ala1409= XP_047287193.1:p.Ala1409Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287172.1:p.Ala1479= XP_047287172.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287173.1:p.Ala1479= XP_047287173.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287185.1:p.Ala1479= XP_047287185.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287179.1:p.Ala1479= XP_047287179.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287174.1:p.Ala1479= XP_047287174.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287165.1:p.Ala1479= XP_047287165.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287180.1:p.Ala1479= XP_047287180.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287175.1:p.Ala1479= XP_047287175.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287196.1:p.Ala985= XP_047287196.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X1 XP_047287187.1:p.Ala1479= XP_047287187.1:p.Ala1479Thr
signal-induced proliferation-associated 1-like protein 1 isoform 2 NP_001373865.1:p.Ala1458= NP_001373865.1:p.Ala1458Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287200.1:p.Ala985= XP_047287200.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287204.1:p.Ala964= XP_047287204.1:p.Ala964Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287197.1:p.Ala985= XP_047287197.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287206.1:p.Ala964= XP_047287206.1:p.Ala964Thr
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287207.1:p.Ala964= XP_047287207.1:p.Ala964Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287195.1:p.Ala985= XP_047287195.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287199.1:p.Ala985= XP_047287199.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287201.1:p.Ala985= XP_047287201.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287194.1:p.Ala985= XP_047287194.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X10 XP_047287209.1:p.Ala964= XP_047287209.1:p.Ala964Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287202.1:p.Ala985= XP_047287202.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X8 XP_047287198.1:p.Ala985= XP_047287198.1:p.Ala985Thr
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287203.1:p.Ala964= XP_047287203.1:p.Ala964Thr
signal-induced proliferation-associated 1-like protein 1 isoform X9 XP_047287205.1:p.Ala964= XP_047287205.1:p.Ala964Thr
signal-induced proliferation-associated 1-like protein 1 isoform X10 XP_047287208.1:p.Ala964= XP_047287208.1:p.Ala964Thr
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

6 SubSNP, 6 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2740811426 Nov 08, 2017 (151)
2 GNOMAD ss2749165719 Nov 08, 2017 (151)
3 GNOMAD ss2929277830 Nov 08, 2017 (151)
4 TOPMED ss4975478670 Apr 27, 2021 (155)
5 TOMMO_GENOMICS ss5213858518 Apr 27, 2021 (155)
6 TOMMO_GENOMICS ss5766842457 Oct 16, 2022 (156)
7 gnomAD - Genomes NC_000014.9 - 71723810 Apr 27, 2021 (155)
8 gnomAD - Exomes NC_000014.8 - 72190527 Jul 13, 2019 (153)
9 8.3KJPN NC_000014.8 - 72190527 Apr 27, 2021 (155)
10 14KJPN NC_000014.9 - 71723810 Oct 16, 2022 (156)
11 TopMed NC_000014.9 - 71723810 Apr 27, 2021 (155)
12 ALFA NC_000014.9 - 71723810 Apr 27, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
10066297, 71827825, ss2740811426, ss2749165719, ss2929277830, ss5213858518 NC_000014.8:72190526:G:A NC_000014.9:71723809:G:A (self)
455205303, 100679561, 191024329, 8485432242, ss4975478670, ss5766842457 NC_000014.9:71723809:G:A NC_000014.9:71723809:G:A (self)
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Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1489958715

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d