dbSNP Short Genetic Variations
Welcome to the Reference SNP (rs) Report
All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.
Reference SNP (rs) Report
This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.
rs1491471527
Current Build 156
Released September 21, 2022
- Organism
- Homo sapiens
- Position
-
chr2:237629469 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
- Alleles
- insCT
- Variation Type
- Indel Insertion and Deletion
- Frequency
- insCT=0.00000 (0/11862, ALFA)
- Clinical Significance
- Not Reported in ClinVar
- Gene : Consequence
- LRRFIP1 : Intron Variant
- Publications
- 0 citations
- Genomic View
- See rs on genome
ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.
| Population | Group | Sample Size | Ref Allele | Alt Allele | Ref HMOZ | Alt HMOZ | HTRZ | HWEP |
|---|---|---|---|---|---|---|---|---|
| Total | Global | 11862 | T=1.00000 | TCT=0.00000 | 1.0 | 0.0 | 0.0 | N/A |
| European | Sub | 7618 | T=1.0000 | TCT=0.0000 | 1.0 | 0.0 | 0.0 | N/A |
| African | Sub | 2816 | T=1.0000 | TCT=0.0000 | 1.0 | 0.0 | 0.0 | N/A |
| African Others | Sub | 108 | T=1.000 | TCT=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| African American | Sub | 2708 | T=1.0000 | TCT=0.0000 | 1.0 | 0.0 | 0.0 | N/A |
| Asian | Sub | 108 | T=1.000 | TCT=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| East Asian | Sub | 84 | T=1.00 | TCT=0.00 | 1.0 | 0.0 | 0.0 | N/A |
| Other Asian | Sub | 24 | T=1.00 | TCT=0.00 | 1.0 | 0.0 | 0.0 | N/A |
| Latin American 1 | Sub | 146 | T=1.000 | TCT=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| Latin American 2 | Sub | 610 | T=1.000 | TCT=0.000 | 1.0 | 0.0 | 0.0 | N/A |
| South Asian | Sub | 94 | T=1.00 | TCT=0.00 | 1.0 | 0.0 | 0.0 | N/A |
| Other | Sub | 470 | T=1.000 | TCT=0.000 | 1.0 | 0.0 | 0.0 | N/A |
Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").
Download| Study | Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| Allele Frequency Aggregator | Total | Global | 11862 | T=1.00000 | insCT=0.00000 |
| Allele Frequency Aggregator | European | Sub | 7618 | T=1.0000 | insCT=0.0000 |
| Allele Frequency Aggregator | African | Sub | 2816 | T=1.0000 | insCT=0.0000 |
| Allele Frequency Aggregator | Latin American 2 | Sub | 610 | T=1.000 | insCT=0.000 |
| Allele Frequency Aggregator | Other | Sub | 470 | T=1.000 | insCT=0.000 |
| Allele Frequency Aggregator | Latin American 1 | Sub | 146 | T=1.000 | insCT=0.000 |
| Allele Frequency Aggregator | Asian | Sub | 108 | T=1.000 | insCT=0.000 |
| Allele Frequency Aggregator | South Asian | Sub | 94 | T=1.00 | insCT=0.00 |
Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.
| Sequence name | Change |
|---|---|
| GRCh38.p14 chr 2 | NC_000002.12:g.237629469_237629470insCT |
| GRCh37.p13 chr 2 | NC_000002.11:g.238538112_238538113insCT |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| LRRFIP1 transcript variant 1 |
NM_001137550.2:c.96+1729_… NM_001137550.2:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant 2 | NM_001137551.2:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant 3 | NM_001137552.2:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant 5 | NM_001137553.2:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant 4 | NM_004735.4:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X42 |
XM_005246141.5:c.96+1729_… XM_005246141.5:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X45 |
XM_005246142.3:c.96+1729_… XM_005246142.3:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X34 |
XM_017005257.3:c.96+1729_… XM_017005257.3:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X35 |
XM_017005260.3:c.96+1729_… XM_017005260.3:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X36 |
XM_017005262.3:c.96+1729_… XM_017005262.3:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X38 |
XM_017005263.3:c.96+1729_… XM_017005263.3:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X1 |
XM_047446293.1:c.96+1729_… XM_047446293.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X2 |
XM_047446294.1:c.96+1729_… XM_047446294.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X3 |
XM_047446295.1:c.96+1729_… XM_047446295.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X4 |
XM_047446296.1:c.96+1729_… XM_047446296.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X5 |
XM_047446297.1:c.96+1729_… XM_047446297.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X6 |
XM_047446298.1:c.96+1729_… XM_047446298.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X7 |
XM_047446299.1:c.96+1729_… XM_047446299.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X9 |
XM_047446301.1:c.96+1729_… XM_047446301.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X10 |
XM_047446302.1:c.96+1729_… XM_047446302.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X11 |
XM_047446303.1:c.96+1729_… XM_047446303.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X14 |
XM_047446306.1:c.96+1729_… XM_047446306.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X15 |
XM_047446307.1:c.96+1729_… XM_047446307.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X17 |
XM_047446309.1:c.96+1729_… XM_047446309.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X18 |
XM_047446310.1:c.96+1729_… XM_047446310.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X20 |
XM_047446312.1:c.96+1729_… XM_047446312.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X23 |
XM_047446315.1:c.96+1729_… XM_047446315.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X24 |
XM_047446316.1:c.96+1729_… XM_047446316.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X25 |
XM_047446317.1:c.96+1729_… XM_047446317.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X26 |
XM_047446318.1:c.96+1729_… XM_047446318.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X30 |
XM_047446322.1:c.96+1729_… XM_047446322.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X31 |
XM_047446323.1:c.96+1729_… XM_047446323.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X33 |
XM_047446325.1:c.96+1729_… XM_047446325.1:c.96+1729_96+1730insCT |
N/A | Intron Variant |
| LRRFIP1 transcript variant X8 | XM_047446300.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X12 | XM_047446304.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X13 | XM_047446305.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X16 | XM_047446308.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X19 | XM_047446311.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X21 | XM_047446313.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X22 | XM_047446314.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X27 | XM_047446319.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X28 | XM_047446320.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X29 | XM_047446321.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X32 | XM_047446324.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X37 | XM_047446326.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X39 | XM_047446327.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X40 | XM_047446328.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X41 | XM_047446329.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X43 | XM_047446330.1:c. | N/A | Genic Upstream Transcript Variant |
| LRRFIP1 transcript variant X44 | XM_047446331.1:c. | N/A | Genic Upstream Transcript Variant |
Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.
Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".
| Placement | T= | insCT |
|---|---|---|
| GRCh38.p14 chr 2 | NC_000002.12:g.237629469= | NC_000002.12:g.237629469_237629470insCT |
| GRCh37.p13 chr 2 | NC_000002.11:g.238538112= | NC_000002.11:g.238538112_238538113insCT |
| LRRFIP1 transcript variant 1 | NM_001137550.1:c.96+1729= | NM_001137550.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant 1 | NM_001137550.2:c.96+1729= | NM_001137550.2:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X1 | XM_005246112.1:c.96+1729= | XM_005246112.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X3 | XM_005246114.1:c.96+1729= | XM_005246114.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X4 | XM_005246115.1:c.96+1729= | XM_005246115.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X5 | XM_005246116.1:c.96+1729= | XM_005246116.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X6 | XM_005246117.1:c.96+1729= | XM_005246117.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X7 | XM_005246118.1:c.96+1729= | XM_005246118.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X8 | XM_005246119.1:c.96+1729= | XM_005246119.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X9 | XM_005246120.1:c.96+1729= | XM_005246120.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X10 | XM_005246121.1:c.96+1729= | XM_005246121.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X11 | XM_005246122.1:c.96+1729= | XM_005246122.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X12 | XM_005246123.1:c.96+1729= | XM_005246123.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X14 | XM_005246125.1:c.96+1729= | XM_005246125.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X15 | XM_005246126.1:c.96+1729= | XM_005246126.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X16 | XM_005246127.1:c.96+1729= | XM_005246127.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X22 | XM_005246128.1:c.96+1729= | XM_005246128.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X18 | XM_005246129.1:c.96+1729= | XM_005246129.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X19 | XM_005246130.1:c.96+1729= | XM_005246130.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X20 | XM_005246131.1:c.96+1729= | XM_005246131.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X21 | XM_005246132.1:c.96+1729= | XM_005246132.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X33 | XM_005246134.1:c.96+1729= | XM_005246134.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X35 | XM_005246136.1:c.96+1729= | XM_005246136.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X26 | XM_005246137.1:c.96+1729= | XM_005246137.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X27 | XM_005246138.1:c.96+1729= | XM_005246138.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X28 | XM_005246139.1:c.96+1729= | XM_005246139.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X29 | XM_005246140.1:c.96+1729= | XM_005246140.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X30 | XM_005246141.1:c.96+1729= | XM_005246141.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X42 | XM_005246141.5:c.96+1729= | XM_005246141.5:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X44 | XM_005246142.1:c.96+1729= | XM_005246142.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X45 | XM_005246142.3:c.96+1729= | XM_005246142.3:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X34 | XM_017005257.3:c.96+1729= | XM_017005257.3:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X35 | XM_017005260.3:c.96+1729= | XM_017005260.3:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X36 | XM_017005262.3:c.96+1729= | XM_017005262.3:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X38 | XM_017005263.3:c.96+1729= | XM_017005263.3:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X1 | XM_047446293.1:c.96+1729= | XM_047446293.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X2 | XM_047446294.1:c.96+1729= | XM_047446294.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X3 | XM_047446295.1:c.96+1729= | XM_047446295.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X4 | XM_047446296.1:c.96+1729= | XM_047446296.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X5 | XM_047446297.1:c.96+1729= | XM_047446297.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X6 | XM_047446298.1:c.96+1729= | XM_047446298.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X7 | XM_047446299.1:c.96+1729= | XM_047446299.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X9 | XM_047446301.1:c.96+1729= | XM_047446301.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X10 | XM_047446302.1:c.96+1729= | XM_047446302.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X11 | XM_047446303.1:c.96+1729= | XM_047446303.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X14 | XM_047446306.1:c.96+1729= | XM_047446306.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X15 | XM_047446307.1:c.96+1729= | XM_047446307.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X17 | XM_047446309.1:c.96+1729= | XM_047446309.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X18 | XM_047446310.1:c.96+1729= | XM_047446310.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X20 | XM_047446312.1:c.96+1729= | XM_047446312.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X23 | XM_047446315.1:c.96+1729= | XM_047446315.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X24 | XM_047446316.1:c.96+1729= | XM_047446316.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X25 | XM_047446317.1:c.96+1729= | XM_047446317.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X26 | XM_047446318.1:c.96+1729= | XM_047446318.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X30 | XM_047446322.1:c.96+1729= | XM_047446322.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X31 | XM_047446323.1:c.96+1729= | XM_047446323.1:c.96+1729_96+1730insCT |
| LRRFIP1 transcript variant X33 | XM_047446325.1:c.96+1729= | XM_047446325.1:c.96+1729_96+1730insCT |
Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.
| No | Submitter | Submission ID | Date (Build) |
|---|---|---|---|
| 1 | EVA_DECODE | ss3706328777 | Jul 13, 2019 (153) |
| 2 | ALFA | NC_000002.12 - 237629469 | Apr 27, 2021 (155) |
History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).
Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.
No publications for rs1491471527
The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.
Genomic regions, transcripts, and products
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Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.