Name: rs150366258
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs150366258

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr20:56393118-56393132 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delTATA / delTA / dupTA / dupTATA …
delTATA / delTA / dupTA / dupTATA / dup(TA)₃ / dup(TA)₄ / dup(TA)₅ / dup(TA)₆
Variation Type: Indel Insertion and Deletion
Frequency: (AT)₇A=0.2055 (1029/5008, 1000G)
dupTATA=0.4178 (1922/4600, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: CSTF1 : Intron Variant
AURKA : 2KB Upstream Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	4600	ATATATATATATATA=0.0541	ATATATATATA=0.0000, ATATATATATATA=0.0000, ATATATATATATATATA=0.5104, ATATATATATATATATATA=0.4178, ATATATATATATATATATATA=0.0174, ATATATATATATATATATATATATATA=0.0002, ATATATATATATATATATATATA=0.0000, ATATATATATATATATATATATATA=0.0000	0.320274	0.220372	0.459354	6
European	Sub	4468	ATATATATATATATA=0.0278	ATATATATATA=0.0000, ATATATATATATA=0.0000, ATATATATATATATATA=0.5244, ATATATATATATATATATA=0.4297, ATATATATATATATATATATA=0.0179, ATATATATATATATATATATATATATA=0.0002, ATATATATATATATATATATATA=0.0000, ATATATATATATATATATATATATA=0.0000	0.319765	0.220696	0.459539	6
African	Sub	108	ATATATATATATATA=1.000	ATATATATATA=0.000, ATATATATATATA=0.000, ATATATATATATATATA=0.000, ATATATATATATATATATA=0.000, ATATATATATATATATATATA=0.000, ATATATATATATATATATATATATATA=0.000, ATATATATATATATATATATATA=0.000, ATATATATATATATATATATATATA=0.000	0	0	0	N/A
African Others	Sub	2	ATATATATATATATA=1.0	ATATATATATA=0.0, ATATATATATATA=0.0, ATATATATATATATATA=0.0, ATATATATATATATATATA=0.0, ATATATATATATATATATATA=0.0, ATATATATATATATATATATATATATA=0.0, ATATATATATATATATATATATA=0.0, ATATATATATATATATATATATATA=0.0	0	0	0	N/A
African American	Sub	106	ATATATATATATATA=1.000	ATATATATATA=0.000, ATATATATATATA=0.000, ATATATATATATATATA=0.000, ATATATATATATATATATA=0.000, ATATATATATATATATATATA=0.000, ATATATATATATATATATATATATATA=0.000, ATATATATATATATATATATATA=0.000, ATATATATATATATATATATATATA=0.000	0	0	0	N/A
Asian	Sub	0	ATATATATATATATA=0	ATATATATATA=0, ATATATATATATA=0, ATATATATATATATATA=0, ATATATATATATATATATA=0, ATATATATATATATATATATA=0, ATATATATATATATATATATATATATA=0, ATATATATATATATATATATATA=0, ATATATATATATATATATATATATA=0	0	0	0	N/A
East Asian	Sub	0	ATATATATATATATA=0	ATATATATATA=0, ATATATATATATA=0, ATATATATATATATATA=0, ATATATATATATATATATA=0, ATATATATATATATATATATA=0, ATATATATATATATATATATATATATA=0, ATATATATATATATATATATATA=0, ATATATATATATATATATATATATA=0	0	0	0	N/A
Other Asian	Sub	0	ATATATATATATATA=0	ATATATATATA=0, ATATATATATATA=0, ATATATATATATATATA=0, ATATATATATATATATATA=0, ATATATATATATATATATATA=0, ATATATATATATATATATATATATATA=0, ATATATATATATATATATATATA=0, ATATATATATATATATATATATATA=0	0	0	0	N/A
Latin American 1	Sub	0	ATATATATATATATA=0	ATATATATATA=0, ATATATATATATA=0, ATATATATATATATATA=0, ATATATATATATATATATA=0, ATATATATATATATATATATA=0, ATATATATATATATATATATATATATA=0, ATATATATATATATATATATATA=0, ATATATATATATATATATATATATA=0	0	0	0	N/A
Latin American 2	Sub	8	ATATATATATATATA=1.0	ATATATATATA=0.0, ATATATATATATA=0.0, ATATATATATATATATA=0.0, ATATATATATATATATATA=0.0, ATATATATATATATATATATA=0.0, ATATATATATATATATATATATATATA=0.0, ATATATATATATATATATATATA=0.0, ATATATATATATATATATATATATA=0.0	0	0	0	N/A
South Asian	Sub	0	ATATATATATATATA=0	ATATATATATA=0, ATATATATATATA=0, ATATATATATATATATA=0, ATATATATATATATATATA=0, ATATATATATATATATATATA=0, ATATATATATATATATATATATATATA=0, ATATATATATATATATATATATA=0, ATATATATATATATATATATATATA=0	0	0	0	N/A
Other	Sub	16	ATATATATATATATA=0.56	ATATATATATA=0.00, ATATATATATATA=0.00, ATATATATATATATATA=0.31, ATATATATATATATATATA=0.12, ATATATATATATATATATATA=0.00, ATATATATATATATATATATATATATA=0.00, ATATATATATATATATATATATA=0.00, ATATATATATATATATATATATATA=0.00	0.666667	0.0	0.333333	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
1000Genomes	Global	Study-wide	5008	- No frequency provided	dupTA=0.7945
1000Genomes	African	Sub	1322	- No frequency provided	dupTA=0.6997
1000Genomes	East Asian	Sub	1008	- No frequency provided	dupTA=0.8115
1000Genomes	Europe	Sub	1006	- No frequency provided	dupTA=0.8767
1000Genomes	South Asian	Sub	978	- No frequency provided	dupTA=0.797
1000Genomes	American	Sub	694	- No frequency provided	dupTA=0.829
Allele Frequency Aggregator	Total	Global	4600	(AT)₇A=0.0541	delTATA=0.0000, delTA=0.0000, dupTA=0.5104, dupTATA=0.4178, dup(TA)₃=0.0174, dup(TA)₄=0.0000, dup(TA)₅=0.0000, dup(TA)₆=0.0002
Allele Frequency Aggregator	European	Sub	4468	(AT)₇A=0.0278	delTATA=0.0000, delTA=0.0000, dupTA=0.5244, dupTATA=0.4297, dup(TA)₃=0.0179, dup(TA)₄=0.0000, dup(TA)₅=0.0000, dup(TA)₆=0.0002
Allele Frequency Aggregator	African	Sub	108	(AT)₇A=1.000	delTATA=0.000, delTA=0.000, dupTA=0.000, dupTATA=0.000, dup(TA)₃=0.000, dup(TA)₄=0.000, dup(TA)₅=0.000, dup(TA)₆=0.000
Allele Frequency Aggregator	Other	Sub	16	(AT)₇A=0.56	delTATA=0.00, delTA=0.00, dupTA=0.31, dupTATA=0.12, dup(TA)₃=0.00, dup(TA)₄=0.00, dup(TA)₅=0.00, dup(TA)₆=0.00
Allele Frequency Aggregator	Latin American 2	Sub	8	(AT)₇A=1.0	delTATA=0.0, delTA=0.0, dupTA=0.0, dupTATA=0.0, dup(TA)₃=0.0, dup(TA)₄=0.0, dup(TA)₅=0.0, dup(TA)₆=0.0
Allele Frequency Aggregator	Latin American 1	Sub	0	(AT)₇A=0	delTATA=0, delTA=0, dupTA=0, dupTATA=0, dup(TA)₃=0, dup(TA)₄=0, dup(TA)₅=0, dup(TA)₆=0
Allele Frequency Aggregator	South Asian	Sub	0	(AT)₇A=0	delTATA=0, delTA=0, dupTA=0, dupTATA=0, dup(TA)₃=0, dup(TA)₄=0, dup(TA)₅=0, dup(TA)₆=0
Allele Frequency Aggregator	Asian	Sub	0	(AT)₇A=0	delTATA=0, delTA=0, dupTA=0, dupTATA=0, dup(TA)₃=0, dup(TA)₄=0, dup(TA)₅=0, dup(TA)₆=0

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[5]
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[6]
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[8]
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[9]
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[10]
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[11]
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[12]
GRCh38.p14 chr 20	NC_000020.11:g.56393119TA[13]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[5]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[6]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[8]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[9]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[10]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[11]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[12]
GRCh37.p13 chr 20	NC_000020.10:g.54968175TA[13]
AURKA RefSeqGene	NG_012133.1:g.4165AT[5]
AURKA RefSeqGene	NG_012133.1:g.4165AT[6]
AURKA RefSeqGene	NG_012133.1:g.4165AT[8]
AURKA RefSeqGene	NG_012133.1:g.4165AT[9]
AURKA RefSeqGene	NG_012133.1:g.4165AT[10]
AURKA RefSeqGene	NG_012133.1:g.4165AT[11]
AURKA RefSeqGene	NG_012133.1:g.4165AT[12]
AURKA RefSeqGene	NG_012133.1:g.4165AT[13]

Gene: CSTF1, cleavage stimulation factor subunit 1 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CSTF1 transcript variant 1	NM_001033521.2:c.-33+580A… NM_001033521.2:c.-33+580AT[5]	N/A	Intron Variant
CSTF1 transcript variant 3	NM_001033522.2:c.-33+303A… NM_001033522.2:c.-33+303AT[5]	N/A	Intron Variant
CSTF1 transcript variant 2	NM_001324.3:c.-33+405AT[5]	N/A	Intron Variant
CSTF1 transcript variant X1	XM_011528600.2:c.-33+379A… XM_011528600.2:c.-33+379AT[5]	N/A	Intron Variant

Gene: AURKA, aurora kinase A (minus strand) : 2KB Upstream Variant

Molecule type	Change	Amino acid[Codon]	SO Term
AURKA transcript variant 7	NM_001323303.2:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 8	NM_001323304.2:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 9	NM_001323305.2:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 2	NM_003600.4:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 1	NM_198433.3:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 3	NM_198434.3:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 4	NM_198435.3:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 5	NM_198436.3:c.	N/A	Upstream Transcript Variant
AURKA transcript variant 6	NM_198437.3:c.	N/A	Upstream Transcript Variant
AURKA transcript variant X1	XM_017028034.3:c.	N/A	Upstream Transcript Variant
AURKA transcript variant X4	XM_017028035.2:c.	N/A	Upstream Transcript Variant
AURKA transcript variant X2	XM_047440427.1:c.	N/A	Upstream Transcript Variant
AURKA transcript variant X3	XM_047440428.1:c.	N/A	Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(AT)₇A=	delTATA	delTA	dupTA	dupTATA	dup(TA)₃	dup(TA)₄	dup(TA)₅	dup(TA)₆
GRCh38.p14 chr 20	NC_000020.11:g.56393118_56393132=	NC_000020.11:g.56393119TA[5]	NC_000020.11:g.56393119TA[6]	NC_000020.11:g.56393119TA[8]	NC_000020.11:g.56393119TA[9]	NC_000020.11:g.56393119TA[10]	NC_000020.11:g.56393119TA[11]	NC_000020.11:g.56393119TA[12]	NC_000020.11:g.56393119TA[13]
GRCh37.p13 chr 20	NC_000020.10:g.54968174_54968188=	NC_000020.10:g.54968175TA[5]	NC_000020.10:g.54968175TA[6]	NC_000020.10:g.54968175TA[8]	NC_000020.10:g.54968175TA[9]	NC_000020.10:g.54968175TA[10]	NC_000020.10:g.54968175TA[11]	NC_000020.10:g.54968175TA[12]	NC_000020.10:g.54968175TA[13]
AURKA RefSeqGene	NG_012133.1:g.4164_4178=	NG_012133.1:g.4165AT[5]	NG_012133.1:g.4165AT[6]	NG_012133.1:g.4165AT[8]	NG_012133.1:g.4165AT[9]	NG_012133.1:g.4165AT[10]	NG_012133.1:g.4165AT[11]	NG_012133.1:g.4165AT[12]	NG_012133.1:g.4165AT[13]
CSTF1 transcript variant 1	NM_001033521.1:c.-33+580=	NM_001033521.1:c.-33+580AT[5]	NM_001033521.1:c.-33+580AT[6]	NM_001033521.1:c.-33+580AT[8]	NM_001033521.1:c.-33+580AT[9]	NM_001033521.1:c.-33+580AT[10]	NM_001033521.1:c.-33+580AT[11]	NM_001033521.1:c.-33+580AT[12]	NM_001033521.1:c.-33+580AT[13]
CSTF1 transcript variant 1	NM_001033521.2:c.-33+580=	NM_001033521.2:c.-33+580AT[5]	NM_001033521.2:c.-33+580AT[6]	NM_001033521.2:c.-33+580AT[8]	NM_001033521.2:c.-33+580AT[9]	NM_001033521.2:c.-33+580AT[10]	NM_001033521.2:c.-33+580AT[11]	NM_001033521.2:c.-33+580AT[12]	NM_001033521.2:c.-33+580AT[13]
CSTF1 transcript variant 3	NM_001033522.1:c.-33+303=	NM_001033522.1:c.-33+303AT[5]	NM_001033522.1:c.-33+303AT[6]	NM_001033522.1:c.-33+303AT[8]	NM_001033522.1:c.-33+303AT[9]	NM_001033522.1:c.-33+303AT[10]	NM_001033522.1:c.-33+303AT[11]	NM_001033522.1:c.-33+303AT[12]	NM_001033522.1:c.-33+303AT[13]
CSTF1 transcript variant 3	NM_001033522.2:c.-33+303=	NM_001033522.2:c.-33+303AT[5]	NM_001033522.2:c.-33+303AT[6]	NM_001033522.2:c.-33+303AT[8]	NM_001033522.2:c.-33+303AT[9]	NM_001033522.2:c.-33+303AT[10]	NM_001033522.2:c.-33+303AT[11]	NM_001033522.2:c.-33+303AT[12]	NM_001033522.2:c.-33+303AT[13]
CSTF1 transcript variant 2	NM_001324.2:c.-33+405=	NM_001324.2:c.-33+405AT[5]	NM_001324.2:c.-33+405AT[6]	NM_001324.2:c.-33+405AT[8]	NM_001324.2:c.-33+405AT[9]	NM_001324.2:c.-33+405AT[10]	NM_001324.2:c.-33+405AT[11]	NM_001324.2:c.-33+405AT[12]	NM_001324.2:c.-33+405AT[13]
CSTF1 transcript variant 2	NM_001324.3:c.-33+405=	NM_001324.3:c.-33+405AT[5]	NM_001324.3:c.-33+405AT[6]	NM_001324.3:c.-33+405AT[8]	NM_001324.3:c.-33+405AT[9]	NM_001324.3:c.-33+405AT[10]	NM_001324.3:c.-33+405AT[11]	NM_001324.3:c.-33+405AT[12]	NM_001324.3:c.-33+405AT[13]
CSTF1 transcript variant X1	XM_011528600.2:c.-33+379=	XM_011528600.2:c.-33+379AT[5]	XM_011528600.2:c.-33+379AT[6]	XM_011528600.2:c.-33+379AT[8]	XM_011528600.2:c.-33+379AT[9]	XM_011528600.2:c.-33+379AT[10]	XM_011528600.2:c.-33+379AT[11]	XM_011528600.2:c.-33+379AT[12]	XM_011528600.2:c.-33+379AT[13]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

58 SubSNP, 21 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	BL	ss256206166	May 09, 2011 (134)
2	1000GENOMES	ss327958541	May 09, 2011 (134)
3	1000GENOMES	ss328071364	May 09, 2011 (134)
4	1000GENOMES	ss328302983	May 09, 2011 (134)
5	LUNTER	ss552672287	Apr 25, 2013 (138)
6	LUNTER	ss553080598	Apr 25, 2013 (138)
7	LUNTER	ss553684048	Apr 25, 2013 (138)
8	SSMP	ss664484490	Apr 01, 2015 (144)
9	BILGI_BIOE	ss666750192	Apr 25, 2013 (138)
10	SSIP	ss947406330	Aug 21, 2014 (142)
11	1000GENOMES	ss1378543205	Aug 21, 2014 (142)
12	DDI	ss1536912653	Apr 01, 2015 (144)
13	EVA_UK10K_ALSPAC	ss1709406007	Apr 01, 2015 (144)
14	EVA_UK10K_ALSPAC	ss1709406009	Apr 01, 2015 (144)
15	EVA_UK10K_TWINSUK	ss1709406485	Apr 01, 2015 (144)
16	EVA_UK10K_TWINSUK	ss1709406488	Apr 01, 2015 (144)
17	SWEGEN	ss3018380617	Nov 08, 2017 (151)
18	SWEGEN	ss3018380618	Nov 08, 2017 (151)
19	SWEGEN	ss3018380619	Nov 08, 2017 (151)
20	MCHAISSO	ss3064860460	Nov 08, 2017 (151)
21	EVA_DECODE	ss3707192773	Jul 13, 2019 (153)
22	EVA_DECODE	ss3707192774	Jul 13, 2019 (153)
23	EVA_DECODE	ss3707192775	Jul 13, 2019 (153)
24	EVA_DECODE	ss3707192776	Jul 13, 2019 (153)
25	EVA_DECODE	ss3707192777	Jul 13, 2019 (153)
26	EVA_DECODE	ss3707192778	Jul 13, 2019 (153)
27	PACBIO	ss3788680554	Jul 13, 2019 (153)
28	PACBIO	ss3788680555	Jul 13, 2019 (153)
29	PACBIO	ss3793566197	Jul 13, 2019 (153)
30	PACBIO	ss3793566198	Jul 13, 2019 (153)
31	PACBIO	ss3798453522	Jul 13, 2019 (153)
32	PACBIO	ss3798453523	Jul 13, 2019 (153)
33	KHV_HUMAN_GENOMES	ss3821952031	Jul 13, 2019 (153)
34	KHV_HUMAN_GENOMES	ss3821952032	Jul 13, 2019 (153)
35	EVA	ss3835734389	Apr 27, 2020 (154)
36	EVA	ss3847004712	Apr 27, 2020 (154)
37	GNOMAD	ss4355515495	Apr 26, 2021 (155)
38	GNOMAD	ss4355515497	Apr 26, 2021 (155)
39	GNOMAD	ss4355515498	Apr 26, 2021 (155)
40	GNOMAD	ss4355515499	Apr 26, 2021 (155)
41	GNOMAD	ss4355515500	Apr 26, 2021 (155)
42	GNOMAD	ss4355515501	Apr 26, 2021 (155)
43	GNOMAD	ss4355515502	Apr 26, 2021 (155)
44	TOMMO_GENOMICS	ss5230206579	Apr 26, 2021 (155)
45	TOMMO_GENOMICS	ss5230206580	Apr 26, 2021 (155)
46	TOMMO_GENOMICS	ss5230206581	Apr 26, 2021 (155)
47	1000G_HIGH_COVERAGE	ss5309231761	Oct 16, 2022 (156)
48	1000G_HIGH_COVERAGE	ss5309231762	Oct 16, 2022 (156)
49	1000G_HIGH_COVERAGE	ss5309231763	Oct 16, 2022 (156)
50	1000G_HIGH_COVERAGE	ss5309231764	Oct 16, 2022 (156)
51	HUGCELL_USP	ss5501468925	Oct 16, 2022 (156)
52	HUGCELL_USP	ss5501468926	Oct 16, 2022 (156)
53	HUGCELL_USP	ss5501468927	Oct 16, 2022 (156)
54	TOMMO_GENOMICS	ss5790181606	Oct 16, 2022 (156)
55	TOMMO_GENOMICS	ss5790181607	Oct 16, 2022 (156)
56	TOMMO_GENOMICS	ss5790181608	Oct 16, 2022 (156)
57	EVA	ss5845861116	Oct 16, 2022 (156)
58	EVA	ss5845861117	Oct 16, 2022 (156)
59	1000Genomes	NC_000020.10 - 54968174	Oct 12, 2018 (152)
60	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 43593662 (NC_000020.10:54968173::AT 2393/3854) Row 43593663 (NC_000020.10:54968173::ATAT 1313/3854)	-	Oct 12, 2018 (152)
61	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 43593662 (NC_000020.10:54968173::AT 2393/3854) Row 43593663 (NC_000020.10:54968173::ATAT 1313/3854)	-	Oct 12, 2018 (152)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 555358775 (NC_000020.11:56393117::AT 79603/136168) Row 555358777 (NC_000020.11:56393117::ATAT 43385/136164) Row 555358778 (NC_000020.11:56393117::ATATAT 1166/136440)...	-	Apr 26, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 555358775 (NC_000020.11:56393117::AT 79603/136168) Row 555358777 (NC_000020.11:56393117::ATAT 43385/136164) Row 555358778 (NC_000020.11:56393117::ATATAT 1166/136440)...	-	Apr 26, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 555358775 (NC_000020.11:56393117::AT 79603/136168) Row 555358777 (NC_000020.11:56393117::ATAT 43385/136164) Row 555358778 (NC_000020.11:56393117::ATATAT 1166/136440)...	-	Apr 26, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 555358775 (NC_000020.11:56393117::AT 79603/136168) Row 555358777 (NC_000020.11:56393117::ATAT 43385/136164) Row 555358778 (NC_000020.11:56393117::ATATAT 1166/136440)...	-	Apr 26, 2021 (155)
66	gnomAD - Genomes Submission ignored due to conflicting rows: Row 555358775 (NC_000020.11:56393117::AT 79603/136168) Row 555358777 (NC_000020.11:56393117::ATAT 43385/136164) Row 555358778 (NC_000020.11:56393117::ATATAT 1166/136440)...	-	Apr 26, 2021 (155)
67	gnomAD - Genomes Submission ignored due to conflicting rows: Row 555358775 (NC_000020.11:56393117::AT 79603/136168) Row 555358777 (NC_000020.11:56393117::ATAT 43385/136164) Row 555358778 (NC_000020.11:56393117::ATATAT 1166/136440)...	-	Apr 26, 2021 (155)
68	gnomAD - Genomes Submission ignored due to conflicting rows: Row 555358775 (NC_000020.11:56393117::AT 79603/136168) Row 555358777 (NC_000020.11:56393117::ATAT 43385/136164) Row 555358778 (NC_000020.11:56393117::ATATAT 1166/136440)...	-	Apr 26, 2021 (155)
69	8.3KJPN Submission ignored due to conflicting rows: Row 88175886 (NC_000020.10:54968173::AT 13826/16760) Row 88175887 (NC_000020.10:54968173::ATAT 563/16760) Row 88175888 (NC_000020.10:54968173::ATATAT 1/16760)	-	Apr 26, 2021 (155)
70	8.3KJPN Submission ignored due to conflicting rows: Row 88175886 (NC_000020.10:54968173::AT 13826/16760) Row 88175887 (NC_000020.10:54968173::ATAT 563/16760) Row 88175888 (NC_000020.10:54968173::ATATAT 1/16760)	-	Apr 26, 2021 (155)
71	8.3KJPN Submission ignored due to conflicting rows: Row 88175886 (NC_000020.10:54968173::AT 13826/16760) Row 88175887 (NC_000020.10:54968173::ATAT 563/16760) Row 88175888 (NC_000020.10:54968173::ATATAT 1/16760)	-	Apr 26, 2021 (155)
72	14KJPN Submission ignored due to conflicting rows: Row 124018710 (NC_000020.11:56393117::AT 23383/28258) Row 124018711 (NC_000020.11:56393117::ATAT 928/28258) Row 124018712 (NC_000020.11:56393117::ATATAT 3/28258)	-	Oct 16, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 124018710 (NC_000020.11:56393117::AT 23383/28258) Row 124018711 (NC_000020.11:56393117::ATAT 928/28258) Row 124018712 (NC_000020.11:56393117::ATATAT 3/28258)	-	Oct 16, 2022 (156)
74	14KJPN Submission ignored due to conflicting rows: Row 124018710 (NC_000020.11:56393117::AT 23383/28258) Row 124018711 (NC_000020.11:56393117::ATAT 928/28258) Row 124018712 (NC_000020.11:56393117::ATATAT 3/28258)	-	Oct 16, 2022 (156)
75	UK 10K study - Twins Submission ignored due to conflicting rows: Row 43593662 (NC_000020.10:54968173::AT 2302/3708) Row 43593663 (NC_000020.10:54968173::ATAT 1268/3708)	-	Oct 12, 2018 (152)
76	UK 10K study - Twins Submission ignored due to conflicting rows: Row 43593662 (NC_000020.10:54968173::AT 2302/3708) Row 43593663 (NC_000020.10:54968173::ATAT 1268/3708)	-	Oct 12, 2018 (152)
77	A Vietnamese Genetic Variation Database Submission ignored due to conflicting rows: Row 9614408 (NC_000020.10:54968173::ATAT 21/51) Row 9614409 (NC_000020.10:54968173::AT 159/189)	-	Jul 13, 2019 (153)
78	A Vietnamese Genetic Variation Database Submission ignored due to conflicting rows: Row 9614408 (NC_000020.10:54968173::ATAT 21/51) Row 9614409 (NC_000020.10:54968173::AT 159/189)	-	Jul 13, 2019 (153)
79	ALFA	NC_000020.11 - 56393118	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss3707192778	NC_000020.11:56393117:ATAT:	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATA	(self)
ss4355515502	NC_000020.11:56393117:AT:	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATA	(self)
ss3707192777	NC_000020.11:56393119:AT:	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATA	(self)
ss256206166, ss327958541, ss328071364, ss328302983, ss552672287, ss553080598, ss553684048	NC_000020.9:54401580::AT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATA	(self)
78736378, ss664484490, ss1378543205, ss1536912653, ss1709406007, ss1709406485, ss3018380617, ss3788680554, ss3793566197, ss3798453522, ss3835734389, ss5230206579, ss5845861116	NC_000020.10:54968173::AT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATA	(self)
ss3821952032, ss3847004712, ss4355515495, ss5309231761, ss5501468925, ss5790181606	NC_000020.11:56393117::AT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATA	(self)
ss3707192776	NC_000020.11:56393121::AT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATA	(self)
ss666750192, ss947406330, ss1709406009, ss1709406488, ss3018380618, ss3788680555, ss3793566198, ss3798453523, ss5230206580, ss5845861117	NC_000020.10:54968173::ATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATA	(self)
ss3064860460, ss3821952031, ss4355515497, ss5309231762, ss5501468926, ss5790181607	NC_000020.11:56393117::ATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATA	(self)
ss3707192775	NC_000020.11:56393121::ATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATA	(self)
ss3018380619, ss5230206581	NC_000020.10:54968173::ATATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATA	(self)
ss4355515498, ss5309231763, ss5501468927, ss5790181608	NC_000020.11:56393117::ATATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATA	(self)
ss3707192774	NC_000020.11:56393121::ATATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATA	(self)
ss4355515499	NC_000020.11:56393117::ATATATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATA	(self)
ss3707192773	NC_000020.11:56393121::ATATATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATA	(self)
ss4355515500	NC_000020.11:56393117::ATATATATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATA	(self)
ss4355515501, ss5309231764	NC_000020.11:56393117::ATATATATATAT	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATATA	(self)
424198216	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATATA	NC_000020.11:56393117:ATATATATATAT… NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATATA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs150366258

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs150366258