Name: rs1553172649
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1553172649

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr1:53242859-53242872 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delACAC / delAC / dupAC / dupACAC …
delACAC / delAC / dupAC / dupACAC / dup(AC)₃ / dup(AC)₄
Variation Type: Indel Insertion and Deletion
Frequency: dupAC=0.004870 (1289/264690, TOPMED)
dupAC=0.05952 (1682/28258, 14KJPN)
dupAC=0.05955 (998/16760, 8.3KJPN) (+ 2 more)
dupAC=0.00139 (19/13717, ALFA)
dupAC=0.085 (9/106, Vietnamese)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: LRP8 : 3 Prime UTR Variant
MAGOH-DT : 500B Downstream Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	HTRZ	HWEP
Total	Global	13717	ACACACACACACAC=0.99861	ACACACACAC=0.00000, ACACACACACAC=0.00000, ACACACACACACACAC=0.00139, ACACACACACACACACAC=0.00000, ACACACACACACACACACAC=0.00000, ACACACACACACACACACACAC=0.00000	0.998732	0.001268	0
European	Sub	9686	ACACACACACACAC=0.9981	ACACACACAC=0.0000, ACACACACACAC=0.0000, ACACACACACACACAC=0.0019, ACACACACACACACACAC=0.0000, ACACACACACACACACACAC=0.0000, ACACACACACACACACACACAC=0.0000	0.99837	0.00163	0
African	Sub	2686	ACACACACACACAC=1.0000	ACACACACAC=0.0000, ACACACACACAC=0.0000, ACACACACACACACAC=0.0000, ACACACACACACACACAC=0.0000, ACACACACACACACACACAC=0.0000, ACACACACACACACACACACAC=0.0000	1.0	0.0	N/A
African Others	Sub	102	ACACACACACACAC=1.000	ACACACACAC=0.000, ACACACACACAC=0.000, ACACACACACACACAC=0.000, ACACACACACACACACAC=0.000, ACACACACACACACACACAC=0.000, ACACACACACACACACACACAC=0.000	1.0	0.0	N/A
African American	Sub	2584	ACACACACACACAC=1.0000	ACACACACAC=0.0000, ACACACACACAC=0.0000, ACACACACACACACAC=0.0000, ACACACACACACACACAC=0.0000, ACACACACACACACACACAC=0.0000, ACACACACACACACACACACAC=0.0000	1.0	0.0	N/A
Asian	Sub	86	ACACACACACACAC=1.00	ACACACACAC=0.00, ACACACACACAC=0.00, ACACACACACACACAC=0.00, ACACACACACACACACAC=0.00, ACACACACACACACACACAC=0.00, ACACACACACACACACACACAC=0.00	1.0	0.0	N/A
East Asian	Sub	68	ACACACACACACAC=1.00	ACACACACAC=0.00, ACACACACACAC=0.00, ACACACACACACACAC=0.00, ACACACACACACACACAC=0.00, ACACACACACACACACACAC=0.00, ACACACACACACACACACACAC=0.00	1.0	0.0	N/A
Other Asian	Sub	18	ACACACACACACAC=1.00	ACACACACAC=0.00, ACACACACACAC=0.00, ACACACACACACACAC=0.00, ACACACACACACACACAC=0.00, ACACACACACACACACACAC=0.00, ACACACACACACACACACACAC=0.00	1.0	0.0	N/A
Latin American 1	Sub	136	ACACACACACACAC=1.000	ACACACACAC=0.000, ACACACACACAC=0.000, ACACACACACACACAC=0.000, ACACACACACACACACAC=0.000, ACACACACACACACACACAC=0.000, ACACACACACACACACACACAC=0.000	1.0	0.0	N/A
Latin American 2	Sub	590	ACACACACACACAC=1.000	ACACACACAC=0.000, ACACACACACAC=0.000, ACACACACACACACAC=0.000, ACACACACACACACACAC=0.000, ACACACACACACACACACAC=0.000, ACACACACACACACACACACAC=0.000	1.0	0.0	N/A
South Asian	Sub	94	ACACACACACACAC=1.00	ACACACACAC=0.00, ACACACACACAC=0.00, ACACACACACACACAC=0.00, ACACACACACACACACAC=0.00, ACACACACACACACACACAC=0.00, ACACACACACACACACACACAC=0.00	1.0	0.0	N/A
Other	Sub	439	ACACACACACACAC=0.998	ACACACACAC=0.000, ACACACACACAC=0.000, ACACACACACACACAC=0.002, ACACACACACACACACAC=0.000, ACACACACACACACACACAC=0.000, ACACACACACACACACACACAC=0.000	0.995434	0.004566	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	- No frequency provided	dupAC=0.004870
14KJPN	JAPANESE	Study-wide	28258	- No frequency provided	dupAC=0.05952
8.3KJPN	JAPANESE	Study-wide	16760	- No frequency provided	dupAC=0.05955
Allele Frequency Aggregator	Total	Global	13717	(AC)₇=0.99861	delACAC=0.00000, delAC=0.00000, dupAC=0.00139, dupACAC=0.00000, dup(AC)₃=0.00000, dup(AC)₄=0.00000
Allele Frequency Aggregator	European	Sub	9686	(AC)₇=0.9981	delACAC=0.0000, delAC=0.0000, dupAC=0.0019, dupACAC=0.0000, dup(AC)₃=0.0000, dup(AC)₄=0.0000
Allele Frequency Aggregator	African	Sub	2686	(AC)₇=1.0000	delACAC=0.0000, delAC=0.0000, dupAC=0.0000, dupACAC=0.0000, dup(AC)₃=0.0000, dup(AC)₄=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	590	(AC)₇=1.000	delACAC=0.000, delAC=0.000, dupAC=0.000, dupACAC=0.000, dup(AC)₃=0.000, dup(AC)₄=0.000
Allele Frequency Aggregator	Other	Sub	439	(AC)₇=0.998	delACAC=0.000, delAC=0.000, dupAC=0.002, dupACAC=0.000, dup(AC)₃=0.000, dup(AC)₄=0.000
Allele Frequency Aggregator	Latin American 1	Sub	136	(AC)₇=1.000	delACAC=0.000, delAC=0.000, dupAC=0.000, dupACAC=0.000, dup(AC)₃=0.000, dup(AC)₄=0.000
Allele Frequency Aggregator	South Asian	Sub	94	(AC)₇=1.00	delACAC=0.00, delAC=0.00, dupAC=0.00, dupACAC=0.00, dup(AC)₃=0.00, dup(AC)₄=0.00
Allele Frequency Aggregator	Asian	Sub	86	(AC)₇=1.00	delACAC=0.00, delAC=0.00, dupAC=0.00, dupACAC=0.00, dup(AC)₃=0.00, dup(AC)₄=0.00
A Vietnamese Genetic Variation Database	Global	Study-wide	106	- No frequency provided	dupAC=0.085

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 1	NC_000001.11:g.53242859AC[5]
GRCh38.p14 chr 1	NC_000001.11:g.53242859AC[6]
GRCh38.p14 chr 1	NC_000001.11:g.53242859AC[8]
GRCh38.p14 chr 1	NC_000001.11:g.53242859AC[9]
GRCh38.p14 chr 1	NC_000001.11:g.53242859AC[10]
GRCh38.p14 chr 1	NC_000001.11:g.53242859AC[11]
GRCh37.p13 chr 1	NC_000001.10:g.53708531AC[5]
GRCh37.p13 chr 1	NC_000001.10:g.53708531AC[6]
GRCh37.p13 chr 1	NC_000001.10:g.53708531AC[8]
GRCh37.p13 chr 1	NC_000001.10:g.53708531AC[9]
GRCh37.p13 chr 1	NC_000001.10:g.53708531AC[10]
GRCh37.p13 chr 1	NC_000001.10:g.53708531AC[11]
LRP8 RefSeqGene	NG_011517.2:g.90278GT[5]
LRP8 RefSeqGene	NG_011517.2:g.90278GT[6]
LRP8 RefSeqGene	NG_011517.2:g.90278GT[8]
LRP8 RefSeqGene	NG_011517.2:g.90278GT[9]
LRP8 RefSeqGene	NG_011517.2:g.90278GT[10]
LRP8 RefSeqGene	NG_011517.2:g.90278GT[11]

Gene: LRP8, LDL receptor related protein 8 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LRP8 transcript variant 1	NM_004631.5:c.4146_4159=	N/A	3 Prime UTR Variant
LRP8 transcript variant 3	NM_017522.5:c.4146_4159=	N/A	3 Prime UTR Variant
LRP8 transcript variant 4	NM_001018054.3:c.4146_4… NM_001018054.3:c.4146_4159=	N/A	3 Prime UTR Variant
LRP8 transcript variant 2	NM_033300.4:c.4146_4159=	N/A	3 Prime UTR Variant

Gene: MAGOH-DT, MAGOH divergent transcript (plus strand) : 500B Downstream Variant

Molecule type	Change	Amino acid[Codon]	SO Term
MAGOH-DT transcript	NR_038953.1:n.	N/A	Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(AC)₇=	delACAC	delAC	dupAC	dupACAC	dup(AC)₃	dup(AC)₄
GRCh38.p14 chr 1	NC_000001.11:g.53242859_53242872=	NC_000001.11:g.53242859AC[5]	NC_000001.11:g.53242859AC[6]	NC_000001.11:g.53242859AC[8]	NC_000001.11:g.53242859AC[9]	NC_000001.11:g.53242859AC[10]	NC_000001.11:g.53242859AC[11]
GRCh37.p13 chr 1	NC_000001.10:g.53708531_53708544=	NC_000001.10:g.53708531AC[5]	NC_000001.10:g.53708531AC[6]	NC_000001.10:g.53708531AC[8]	NC_000001.10:g.53708531AC[9]	NC_000001.10:g.53708531AC[10]	NC_000001.10:g.53708531AC[11]
LRP8 RefSeqGene	NG_011517.2:g.90278_90291=	NG_011517.2:g.90278GT[5]	NG_011517.2:g.90278GT[6]	NG_011517.2:g.90278GT[8]	NG_011517.2:g.90278GT[9]	NG_011517.2:g.90278GT[10]	NG_011517.2:g.90278GT[11]
LRP8 transcript variant 1	NM_004631.5:c.4146_4159=	NM_004631.5:c.*4146GT[5]	NM_004631.5:c.*4146GT[6]	NM_004631.5:c.*4146GT[8]	NM_004631.5:c.*4146GT[9]	NM_004631.5:c.*4146GT[10]	NM_004631.5:c.*4146GT[11]
LRP8 transcript variant 1	NM_004631.4:c.4146_4159=	NM_004631.4:c.*4146GT[5]	NM_004631.4:c.*4146GT[6]	NM_004631.4:c.*4146GT[8]	NM_004631.4:c.*4146GT[9]	NM_004631.4:c.*4146GT[10]	NM_004631.4:c.*4146GT[11]
LRP8 transcript variant 3	NM_017522.5:c.4146_4159=	NM_017522.5:c.*4146GT[5]	NM_017522.5:c.*4146GT[6]	NM_017522.5:c.*4146GT[8]	NM_017522.5:c.*4146GT[9]	NM_017522.5:c.*4146GT[10]	NM_017522.5:c.*4146GT[11]
LRP8 transcript variant 3	NM_017522.4:c.4146_4159=	NM_017522.4:c.*4146GT[5]	NM_017522.4:c.*4146GT[6]	NM_017522.4:c.*4146GT[8]	NM_017522.4:c.*4146GT[9]	NM_017522.4:c.*4146GT[10]	NM_017522.4:c.*4146GT[11]
LRP8 transcript variant 2	NM_033300.4:c.4146_4159=	NM_033300.4:c.*4146GT[5]	NM_033300.4:c.*4146GT[6]	NM_033300.4:c.*4146GT[8]	NM_033300.4:c.*4146GT[9]	NM_033300.4:c.*4146GT[10]	NM_033300.4:c.*4146GT[11]
LRP8 transcript variant 2	NM_033300.3:c.4146_4159=	NM_033300.3:c.*4146GT[5]	NM_033300.3:c.*4146GT[6]	NM_033300.3:c.*4146GT[8]	NM_033300.3:c.*4146GT[9]	NM_033300.3:c.*4146GT[10]	NM_033300.3:c.*4146GT[11]
LRP8 transcript variant 4	NM_001018054.3:c.4146_4159=	NM_001018054.3:c.*4146GT[5]	NM_001018054.3:c.*4146GT[6]	NM_001018054.3:c.*4146GT[8]	NM_001018054.3:c.*4146GT[9]	NM_001018054.3:c.*4146GT[10]	NM_001018054.3:c.*4146GT[11]
LRP8 transcript variant 4	NM_001018054.2:c.4146_4159=	NM_001018054.2:c.*4146GT[5]	NM_001018054.2:c.*4146GT[6]	NM_001018054.2:c.*4146GT[8]	NM_001018054.2:c.*4146GT[9]	NM_001018054.2:c.*4146GT[10]	NM_001018054.2:c.*4146GT[11]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

17 SubSNP, 11 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HUMANGENOME_JCVI	ss98570594	Mar 15, 2016 (147)
2	GMI	ss287980145	Aug 21, 2014 (142)
3	1000GENOMES	ss326033684	Aug 21, 2014 (144)
4	LUNTER	ss550937599	Aug 21, 2014 (144)
5	LUNTER	ss552764069	Aug 21, 2014 (144)
6	SWEGEN	ss2986797154	Jan 10, 2018 (151)
7	GNOMAD	ss3993458901	Apr 25, 2021 (155)
8	GNOMAD	ss3993458902	Apr 25, 2021 (155)
9	GNOMAD	ss3993458903	Apr 25, 2021 (155)
10	GNOMAD	ss3993458904	Apr 25, 2021 (155)
11	GNOMAD	ss3993458926	Apr 25, 2021 (155)
12	GNOMAD	ss3993458927	Apr 25, 2021 (155)
13	TOPMED	ss4449322474	Apr 25, 2021 (155)
14	TOMMO_GENOMICS	ss5143894743	Apr 25, 2021 (155)
15	HUGCELL_USP	ss5443291830	Oct 12, 2022 (156)
16	TOMMO_GENOMICS	ss5668650827	Oct 12, 2022 (156)
17	EVA	ss5831941866	Oct 12, 2022 (156)
18	gnomAD - Genomes Submission ignored due to conflicting rows: Row 11052375 (NC_000001.11:53242858::AC 713/129210) Row 11052376 (NC_000001.11:53242858::ACAC 741/129158) Row 11052377 (NC_000001.11:53242858::ACACAC 150/129208)...	-	Apr 25, 2021 (155)
19	gnomAD - Genomes Submission ignored due to conflicting rows: Row 11052375 (NC_000001.11:53242858::AC 713/129210) Row 11052376 (NC_000001.11:53242858::ACAC 741/129158) Row 11052377 (NC_000001.11:53242858::ACACAC 150/129208)...	-	Apr 25, 2021 (155)
20	gnomAD - Genomes Submission ignored due to conflicting rows: Row 11052375 (NC_000001.11:53242858::AC 713/129210) Row 11052376 (NC_000001.11:53242858::ACAC 741/129158) Row 11052377 (NC_000001.11:53242858::ACACAC 150/129208)...	-	Apr 25, 2021 (155)
21	gnomAD - Genomes Submission ignored due to conflicting rows: Row 11052375 (NC_000001.11:53242858::AC 713/129210) Row 11052376 (NC_000001.11:53242858::ACAC 741/129158) Row 11052377 (NC_000001.11:53242858::ACACAC 150/129208)...	-	Apr 25, 2021 (155)
22	gnomAD - Genomes Submission ignored due to conflicting rows: Row 11052375 (NC_000001.11:53242858::AC 713/129210) Row 11052376 (NC_000001.11:53242858::ACAC 741/129158) Row 11052377 (NC_000001.11:53242858::ACACAC 150/129208)...	-	Apr 25, 2021 (155)
23	gnomAD - Genomes Submission ignored due to conflicting rows: Row 11052375 (NC_000001.11:53242858::AC 713/129210) Row 11052376 (NC_000001.11:53242858::ACAC 741/129158) Row 11052377 (NC_000001.11:53242858::ACACAC 150/129208)...	-	Apr 25, 2021 (155)
24	8.3KJPN	NC_000001.10 - 53708531	Apr 25, 2021 (155)
25	14KJPN	NC_000001.11 - 53242859	Oct 12, 2022 (156)
26	TopMed	NC_000001.11 - 53242859	Apr 25, 2021 (155)
27	A Vietnamese Genetic Variation Database	NC_000001.10 - 53708531	Jul 12, 2019 (153)
28	ALFA	NC_000001.11 - 53242859	Apr 25, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs71579964	May 15, 2013 (138)
rs138940985	May 04, 2012 (137)
rs374075799	May 13, 2013 (138)
rs528776900	Apr 01, 2015 (144)
rs796527635	Nov 08, 2017 (151)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss3993458927	NC_000001.11:53242858:ACAC:	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACAC	(self)
12045072132	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACAC	(self)
ss3993458926	NC_000001.11:53242858:AC:	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACAC	(self)
12045072132	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACAC	(self)
ss287980145	NC_000001.9:53481132::AC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACAC	(self)
1864050, 173332, ss2986797154, ss5143894743	NC_000001.10:53708530::AC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACAC	(self)
2487931, 12928809, ss3993458901, ss4449322474, ss5668650827	NC_000001.11:53242858::AC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACAC	(self)
12045072132	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACAC	(self)
ss326033684, ss550937599, ss552764069	NC_000001.9:53481118::ACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACAC	(self)
ss5831941866	NC_000001.10:53708530::ACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACAC
ss3993458902, ss5443291830	NC_000001.11:53242858::ACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACAC	(self)
12045072132	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACAC	(self)
ss3993458903	NC_000001.11:53242858::ACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACACAC	(self)
12045072132	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACACAC	(self)
ss98570594	NT_032977.9:23680462::ACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACACAC	(self)
ss3993458904	NC_000001.11:53242858::ACACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACACACAC	(self)
12045072132	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACACACAC	NC_000001.11:53242858:ACACACACACAC… NC_000001.11:53242858:ACACACACACACAC:ACACACACACACACACACACAC	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1553172649

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs1553172649