Name: rs1555168682
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1555168682

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr12:52052305-52052328 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(GA)₄ / del(GA)₃ / delGAGA / de…
del(GA)₄ / del(GA)₃ / delGAGA / delGA / dupGA / dupGAGA / dup(GA)₃ / dup(GA)₄ / dup(GA)₅ / dup(GA)₆
Variation Type: Indel Insertion and Deletion
Frequency: del(GA)₄=0.00000 (0/11520, ALFA)
del(GA)₃=0.00000 (0/11520, ALFA)
delGAGA=0.00000 (0/11520, ALFA) (+ 7 more)
delGA=0.00000 (0/11520, ALFA)
dupGA=0.00000 (0/11520, ALFA)
dupGAGA=0.00000 (0/11520, ALFA)
dup(GA)₃=0.00000 (0/11520, ALFA)
dup(GA)₄=0.00000 (0/11520, ALFA)
dup(GA)₅=0.00000 (0/11520, ALFA)
dup(GA)₆=0.00000 (0/11520, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: NR4A1 : Intron Variant
LOC107984510 : 2KB Upstream Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	HWEP
Total	Global	11520	GAGAGAGAGAGAGAGAGAGAGAGA=1.00000	GAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00000	1.0	N/A
European	Sub	7590	GAGAGAGAGAGAGAGAGAGAGAGA=1.0000	GAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000	1.0	N/A
African	Sub	2522	GAGAGAGAGAGAGAGAGAGAGAGA=1.0000	GAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000	1.0	N/A
African Others	Sub	92	GAGAGAGAGAGAGAGAGAGAGAGA=1.00	GAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00	1.0	N/A
African American	Sub	2430	GAGAGAGAGAGAGAGAGAGAGAGA=1.0000	GAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.0000	1.0	N/A
Asian	Sub	104	GAGAGAGAGAGAGAGAGAGAGAGA=1.000	GAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000	1.0	N/A
East Asian	Sub	80	GAGAGAGAGAGAGAGAGAGAGAGA=1.00	GAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00	1.0	N/A
Other Asian	Sub	24	GAGAGAGAGAGAGAGAGAGAGAGA=1.00	GAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00	1.0	N/A
Latin American 1	Sub	140	GAGAGAGAGAGAGAGAGAGAGAGA=1.000	GAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000	1.0	N/A
Latin American 2	Sub	610	GAGAGAGAGAGAGAGAGAGAGAGA=1.000	GAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000	1.0	N/A
South Asian	Sub	92	GAGAGAGAGAGAGAGAGAGAGAGA=1.00	GAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.00	1.0	N/A
Other	Sub	462	GAGAGAGAGAGAGAGAGAGAGAGA=1.000	GAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000, GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA=0.000	1.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	11520	(GA)₁₂=1.00000	del(GA)₄=0.00000, del(GA)₃=0.00000, delGAGA=0.00000, delGA=0.00000, dupGA=0.00000, dupGAGA=0.00000, dup(GA)₃=0.00000, dup(GA)₄=0.00000, dup(GA)₅=0.00000, dup(GA)₆=0.00000
Allele Frequency Aggregator	European	Sub	7590	(GA)₁₂=1.0000	del(GA)₄=0.0000, del(GA)₃=0.0000, delGAGA=0.0000, delGA=0.0000, dupGA=0.0000, dupGAGA=0.0000, dup(GA)₃=0.0000, dup(GA)₄=0.0000, dup(GA)₅=0.0000, dup(GA)₆=0.0000
Allele Frequency Aggregator	African	Sub	2522	(GA)₁₂=1.0000	del(GA)₄=0.0000, del(GA)₃=0.0000, delGAGA=0.0000, delGA=0.0000, dupGA=0.0000, dupGAGA=0.0000, dup(GA)₃=0.0000, dup(GA)₄=0.0000, dup(GA)₅=0.0000, dup(GA)₆=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	610	(GA)₁₂=1.000	del(GA)₄=0.000, del(GA)₃=0.000, delGAGA=0.000, delGA=0.000, dupGA=0.000, dupGAGA=0.000, dup(GA)₃=0.000, dup(GA)₄=0.000, dup(GA)₅=0.000, dup(GA)₆=0.000
Allele Frequency Aggregator	Other	Sub	462	(GA)₁₂=1.000	del(GA)₄=0.000, del(GA)₃=0.000, delGAGA=0.000, delGA=0.000, dupGA=0.000, dupGAGA=0.000, dup(GA)₃=0.000, dup(GA)₄=0.000, dup(GA)₅=0.000, dup(GA)₆=0.000
Allele Frequency Aggregator	Latin American 1	Sub	140	(GA)₁₂=1.000	del(GA)₄=0.000, del(GA)₃=0.000, delGAGA=0.000, delGA=0.000, dupGA=0.000, dupGAGA=0.000, dup(GA)₃=0.000, dup(GA)₄=0.000, dup(GA)₅=0.000, dup(GA)₆=0.000
Allele Frequency Aggregator	Asian	Sub	104	(GA)₁₂=1.000	del(GA)₄=0.000, del(GA)₃=0.000, delGAGA=0.000, delGA=0.000, dupGA=0.000, dupGAGA=0.000, dup(GA)₃=0.000, dup(GA)₄=0.000, dup(GA)₅=0.000, dup(GA)₆=0.000
Allele Frequency Aggregator	South Asian	Sub	92	(GA)₁₂=1.00	del(GA)₄=0.00, del(GA)₃=0.00, delGAGA=0.00, delGA=0.00, dupGA=0.00, dupGAGA=0.00, dup(GA)₃=0.00, dup(GA)₄=0.00, dup(GA)₅=0.00, dup(GA)₆=0.00

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[8]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[9]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[10]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[11]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[13]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[14]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[15]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[16]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[17]
GRCh38.p14 chr 12	NC_000012.12:g.52052305GA[18]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[8]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[9]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[10]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[11]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[13]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[14]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[15]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[16]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[17]
GRCh37.p13 chr 12	NC_000012.11:g.52446089GA[18]

Gene: NR4A1, nuclear receptor subfamily 4 group A member 1 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
NR4A1 transcript variant 3	NM_001202233.2:c.38-2022G… NM_001202233.2:c.38-2022GA[8]	N/A	Intron Variant
NR4A1 transcript variant 4	NM_001202234.2:c.161-2022… NM_001202234.2:c.161-2022GA[8]	N/A	Intron Variant
NR4A1 transcript variant 1	NM_002135.5:c.-152-191GA[… NM_002135.5:c.-152-191GA[8]	N/A	Intron Variant
NR4A1 transcript variant 2	NM_173157.3:c.-3+737GA[8]	N/A	Intron Variant
NR4A1 transcript variant X2	XM_005268822.4:c.215-2022… XM_005268822.4:c.215-2022GA[8]	N/A	Intron Variant
NR4A1 transcript variant X5	XM_005268824.4:c.-2-2022G… XM_005268824.4:c.-2-2022GA[8]	N/A	Intron Variant
NR4A1 transcript variant X4	XM_017019247.2:c.10+632GA… XM_017019247.2:c.10+632GA[8]	N/A	Intron Variant
NR4A1 transcript variant X1	XM_047428755.1:c.746-2022… XM_047428755.1:c.746-2022GA[8]	N/A	Intron Variant
NR4A1 transcript variant X3	XM_047428756.1:c.38-2022G… XM_047428756.1:c.38-2022GA[8]	N/A	Intron Variant
NR4A1 transcript variant X6	XM_047428757.1:c.746-2022… XM_047428757.1:c.746-2022GA[8]	N/A	Intron Variant
NR4A1 transcript variant X7	XM_017019248.2:c.	N/A	Genic Downstream Transcript Variant
NR4A1 transcript variant X8	XM_017019249.2:c.	N/A	Genic Downstream Transcript Variant

Gene: LOC107984510, uncharacterized LOC107984510 (minus strand) : 2KB Upstream Variant

Molecule type	Change	Amino acid[Codon]	SO Term
LOC107984510 transcript	XR_001749148.3:n.	N/A	Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(GA)₁₂=	del(GA)₄	del(GA)₃	delGAGA	delGA	dupGA	dupGAGA	dup(GA)₃	dup(GA)₄	dup(GA)₅	dup(GA)₆
GRCh38.p14 chr 12	NC_000012.12:g.52052305_52052328=	NC_000012.12:g.52052305GA[8]	NC_000012.12:g.52052305GA[9]	NC_000012.12:g.52052305GA[10]	NC_000012.12:g.52052305GA[11]	NC_000012.12:g.52052305GA[13]	NC_000012.12:g.52052305GA[14]	NC_000012.12:g.52052305GA[15]	NC_000012.12:g.52052305GA[16]	NC_000012.12:g.52052305GA[17]	NC_000012.12:g.52052305GA[18]
GRCh37.p13 chr 12	NC_000012.11:g.52446089_52446112=	NC_000012.11:g.52446089GA[8]	NC_000012.11:g.52446089GA[9]	NC_000012.11:g.52446089GA[10]	NC_000012.11:g.52446089GA[11]	NC_000012.11:g.52446089GA[13]	NC_000012.11:g.52446089GA[14]	NC_000012.11:g.52446089GA[15]	NC_000012.11:g.52446089GA[16]	NC_000012.11:g.52446089GA[17]	NC_000012.11:g.52446089GA[18]
NR4A1 transcript variant 3	NM_001202233.1:c.38-2022=	NM_001202233.1:c.38-2022GA[8]	NM_001202233.1:c.38-2022GA[9]	NM_001202233.1:c.38-2022GA[10]	NM_001202233.1:c.38-2022GA[11]	NM_001202233.1:c.38-2022GA[13]	NM_001202233.1:c.38-2022GA[14]	NM_001202233.1:c.38-2022GA[15]	NM_001202233.1:c.38-2022GA[16]	NM_001202233.1:c.38-2022GA[17]	NM_001202233.1:c.38-2022GA[18]
NR4A1 transcript variant 3	NM_001202233.2:c.38-2022=	NM_001202233.2:c.38-2022GA[8]	NM_001202233.2:c.38-2022GA[9]	NM_001202233.2:c.38-2022GA[10]	NM_001202233.2:c.38-2022GA[11]	NM_001202233.2:c.38-2022GA[13]	NM_001202233.2:c.38-2022GA[14]	NM_001202233.2:c.38-2022GA[15]	NM_001202233.2:c.38-2022GA[16]	NM_001202233.2:c.38-2022GA[17]	NM_001202233.2:c.38-2022GA[18]
NR4A1 transcript variant 4	NM_001202234.2:c.161-2022=	NM_001202234.2:c.161-2022GA[8]	NM_001202234.2:c.161-2022GA[9]	NM_001202234.2:c.161-2022GA[10]	NM_001202234.2:c.161-2022GA[11]	NM_001202234.2:c.161-2022GA[13]	NM_001202234.2:c.161-2022GA[14]	NM_001202234.2:c.161-2022GA[15]	NM_001202234.2:c.161-2022GA[16]	NM_001202234.2:c.161-2022GA[17]	NM_001202234.2:c.161-2022GA[18]
NR4A1 transcript variant 1	NM_002135.4:c.-152-191=	NM_002135.4:c.-152-191GA[8]	NM_002135.4:c.-152-191GA[9]	NM_002135.4:c.-152-191GA[10]	NM_002135.4:c.-152-191GA[11]	NM_002135.4:c.-152-191GA[13]	NM_002135.4:c.-152-191GA[14]	NM_002135.4:c.-152-191GA[15]	NM_002135.4:c.-152-191GA[16]	NM_002135.4:c.-152-191GA[17]	NM_002135.4:c.-152-191GA[18]
NR4A1 transcript variant 1	NM_002135.5:c.-152-191=	NM_002135.5:c.-152-191GA[8]	NM_002135.5:c.-152-191GA[9]	NM_002135.5:c.-152-191GA[10]	NM_002135.5:c.-152-191GA[11]	NM_002135.5:c.-152-191GA[13]	NM_002135.5:c.-152-191GA[14]	NM_002135.5:c.-152-191GA[15]	NM_002135.5:c.-152-191GA[16]	NM_002135.5:c.-152-191GA[17]	NM_002135.5:c.-152-191GA[18]
NR4A1 transcript variant 2	NM_173157.2:c.-3+737=	NM_173157.2:c.-3+737GA[8]	NM_173157.2:c.-3+737GA[9]	NM_173157.2:c.-3+737GA[10]	NM_173157.2:c.-3+737GA[11]	NM_173157.2:c.-3+737GA[13]	NM_173157.2:c.-3+737GA[14]	NM_173157.2:c.-3+737GA[15]	NM_173157.2:c.-3+737GA[16]	NM_173157.2:c.-3+737GA[17]	NM_173157.2:c.-3+737GA[18]
NR4A1 transcript variant 2	NM_173157.3:c.-3+737=	NM_173157.3:c.-3+737GA[8]	NM_173157.3:c.-3+737GA[9]	NM_173157.3:c.-3+737GA[10]	NM_173157.3:c.-3+737GA[11]	NM_173157.3:c.-3+737GA[13]	NM_173157.3:c.-3+737GA[14]	NM_173157.3:c.-3+737GA[15]	NM_173157.3:c.-3+737GA[16]	NM_173157.3:c.-3+737GA[17]	NM_173157.3:c.-3+737GA[18]
NR4A1 transcript variant X1	XM_005268822.1:c.215-2022=	XM_005268822.1:c.215-2022GA[8]	XM_005268822.1:c.215-2022GA[9]	XM_005268822.1:c.215-2022GA[10]	XM_005268822.1:c.215-2022GA[11]	XM_005268822.1:c.215-2022GA[13]	XM_005268822.1:c.215-2022GA[14]	XM_005268822.1:c.215-2022GA[15]	XM_005268822.1:c.215-2022GA[16]	XM_005268822.1:c.215-2022GA[17]	XM_005268822.1:c.215-2022GA[18]
NR4A1 transcript variant X2	XM_005268822.4:c.215-2022=	XM_005268822.4:c.215-2022GA[8]	XM_005268822.4:c.215-2022GA[9]	XM_005268822.4:c.215-2022GA[10]	XM_005268822.4:c.215-2022GA[11]	XM_005268822.4:c.215-2022GA[13]	XM_005268822.4:c.215-2022GA[14]	XM_005268822.4:c.215-2022GA[15]	XM_005268822.4:c.215-2022GA[16]	XM_005268822.4:c.215-2022GA[17]	XM_005268822.4:c.215-2022GA[18]
NR4A1 transcript variant X2	XM_005268823.1:c.161-2022=	XM_005268823.1:c.161-2022GA[8]	XM_005268823.1:c.161-2022GA[9]	XM_005268823.1:c.161-2022GA[10]	XM_005268823.1:c.161-2022GA[11]	XM_005268823.1:c.161-2022GA[13]	XM_005268823.1:c.161-2022GA[14]	XM_005268823.1:c.161-2022GA[15]	XM_005268823.1:c.161-2022GA[16]	XM_005268823.1:c.161-2022GA[17]	XM_005268823.1:c.161-2022GA[18]
NR4A1 transcript variant X3	XM_005268824.1:c.-2-2022=	XM_005268824.1:c.-2-2022GA[8]	XM_005268824.1:c.-2-2022GA[9]	XM_005268824.1:c.-2-2022GA[10]	XM_005268824.1:c.-2-2022GA[11]	XM_005268824.1:c.-2-2022GA[13]	XM_005268824.1:c.-2-2022GA[14]	XM_005268824.1:c.-2-2022GA[15]	XM_005268824.1:c.-2-2022GA[16]	XM_005268824.1:c.-2-2022GA[17]	XM_005268824.1:c.-2-2022GA[18]
NR4A1 transcript variant X5	XM_005268824.4:c.-2-2022=	XM_005268824.4:c.-2-2022GA[8]	XM_005268824.4:c.-2-2022GA[9]	XM_005268824.4:c.-2-2022GA[10]	XM_005268824.4:c.-2-2022GA[11]	XM_005268824.4:c.-2-2022GA[13]	XM_005268824.4:c.-2-2022GA[14]	XM_005268824.4:c.-2-2022GA[15]	XM_005268824.4:c.-2-2022GA[16]	XM_005268824.4:c.-2-2022GA[17]	XM_005268824.4:c.-2-2022GA[18]
NR4A1 transcript variant X4	XM_017019247.2:c.10+632=	XM_017019247.2:c.10+632GA[8]	XM_017019247.2:c.10+632GA[9]	XM_017019247.2:c.10+632GA[10]	XM_017019247.2:c.10+632GA[11]	XM_017019247.2:c.10+632GA[13]	XM_017019247.2:c.10+632GA[14]	XM_017019247.2:c.10+632GA[15]	XM_017019247.2:c.10+632GA[16]	XM_017019247.2:c.10+632GA[17]	XM_017019247.2:c.10+632GA[18]
NR4A1 transcript variant X1	XM_047428755.1:c.746-2022=	XM_047428755.1:c.746-2022GA[8]	XM_047428755.1:c.746-2022GA[9]	XM_047428755.1:c.746-2022GA[10]	XM_047428755.1:c.746-2022GA[11]	XM_047428755.1:c.746-2022GA[13]	XM_047428755.1:c.746-2022GA[14]	XM_047428755.1:c.746-2022GA[15]	XM_047428755.1:c.746-2022GA[16]	XM_047428755.1:c.746-2022GA[17]	XM_047428755.1:c.746-2022GA[18]
NR4A1 transcript variant X3	XM_047428756.1:c.38-2022=	XM_047428756.1:c.38-2022GA[8]	XM_047428756.1:c.38-2022GA[9]	XM_047428756.1:c.38-2022GA[10]	XM_047428756.1:c.38-2022GA[11]	XM_047428756.1:c.38-2022GA[13]	XM_047428756.1:c.38-2022GA[14]	XM_047428756.1:c.38-2022GA[15]	XM_047428756.1:c.38-2022GA[16]	XM_047428756.1:c.38-2022GA[17]	XM_047428756.1:c.38-2022GA[18]
NR4A1 transcript variant X6	XM_047428757.1:c.746-2022=	XM_047428757.1:c.746-2022GA[8]	XM_047428757.1:c.746-2022GA[9]	XM_047428757.1:c.746-2022GA[10]	XM_047428757.1:c.746-2022GA[11]	XM_047428757.1:c.746-2022GA[13]	XM_047428757.1:c.746-2022GA[14]	XM_047428757.1:c.746-2022GA[15]	XM_047428757.1:c.746-2022GA[16]	XM_047428757.1:c.746-2022GA[17]	XM_047428757.1:c.746-2022GA[18]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

20 SubSNP, 18 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	EVA_DECODE	ss3693675464	Jul 13, 2019 (153)
2	EVA_DECODE	ss3693675469	Jul 13, 2019 (153)
3	KOGIC	ss3971938580	Apr 27, 2020 (154)
4	KOGIC	ss3971938581	Apr 27, 2020 (154)
5	KOGIC	ss3971938582	Apr 27, 2020 (154)
6	GNOMAD	ss4251849822	Apr 26, 2021 (155)
7	GNOMAD	ss4251849823	Apr 26, 2021 (155)
8	GNOMAD	ss4251849824	Apr 26, 2021 (155)
9	GNOMAD	ss4251849825	Apr 26, 2021 (155)
10	GNOMAD	ss4251849844	Apr 26, 2021 (155)
11	GNOMAD	ss4251849845	Apr 26, 2021 (155)
12	GNOMAD	ss4251849846	Apr 26, 2021 (155)
13	GNOMAD	ss4251849847	Apr 26, 2021 (155)
14	TOMMO_GENOMICS	ss5206332979	Apr 26, 2021 (155)
15	TOMMO_GENOMICS	ss5206332980	Apr 26, 2021 (155)
16	TOMMO_GENOMICS	ss5206332981	Apr 26, 2021 (155)
17	HUGCELL_USP	ss5485570252	Oct 13, 2022 (156)
18	TOMMO_GENOMICS	ss5756128227	Oct 13, 2022 (156)
19	TOMMO_GENOMICS	ss5756128228	Oct 13, 2022 (156)
20	TOMMO_GENOMICS	ss5756128229	Oct 13, 2022 (156)
21	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
22	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
23	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
24	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
25	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
26	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
27	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
28	gnomAD - Genomes Submission ignored due to conflicting rows: Row 407413810 (NC_000012.12:52052304::GA 111/65016) Row 407413811 (NC_000012.12:52052304::GAGA 17/65030) Row 407413812 (NC_000012.12:52052304::GAGAGA 58/65028)...	-	Apr 26, 2021 (155)
29	Korean Genome Project Submission ignored due to conflicting rows: Row 28316581 (NC_000012.12:52052308:GA: 10/1236) Row 28316582 (NC_000012.12:52052310::GA 2/1236) Row 28316583 (NC_000012.12:52052306:GAGA: 4/1236)	-	Apr 27, 2020 (154)
30	Korean Genome Project Submission ignored due to conflicting rows: Row 28316581 (NC_000012.12:52052308:GA: 10/1236) Row 28316582 (NC_000012.12:52052310::GA 2/1236) Row 28316583 (NC_000012.12:52052306:GAGA: 4/1236)	-	Apr 27, 2020 (154)
31	Korean Genome Project Submission ignored due to conflicting rows: Row 28316581 (NC_000012.12:52052308:GA: 10/1236) Row 28316582 (NC_000012.12:52052310::GA 2/1236) Row 28316583 (NC_000012.12:52052306:GAGA: 4/1236)	-	Apr 27, 2020 (154)
32	8.3KJPN Submission ignored due to conflicting rows: Row 64302286 (NC_000012.11:52446088::GA 21/10662) Row 64302287 (NC_000012.11:52446088:GA: 13/10662) Row 64302288 (NC_000012.11:52446088:GAGA: 21/10662)	-	Apr 26, 2021 (155)
33	8.3KJPN Submission ignored due to conflicting rows: Row 64302286 (NC_000012.11:52446088::GA 21/10662) Row 64302287 (NC_000012.11:52446088:GA: 13/10662) Row 64302288 (NC_000012.11:52446088:GAGA: 21/10662)	-	Apr 26, 2021 (155)
34	8.3KJPN Submission ignored due to conflicting rows: Row 64302286 (NC_000012.11:52446088::GA 21/10662) Row 64302287 (NC_000012.11:52446088:GA: 13/10662) Row 64302288 (NC_000012.11:52446088:GAGA: 21/10662)	-	Apr 26, 2021 (155)
35	14KJPN Submission ignored due to conflicting rows: Row 89965331 (NC_000012.12:52052304:GAGA: 28/26612) Row 89965332 (NC_000012.12:52052304::GA 51/26612) Row 89965333 (NC_000012.12:52052304:GA: 27/26612)	-	Oct 13, 2022 (156)
36	14KJPN Submission ignored due to conflicting rows: Row 89965331 (NC_000012.12:52052304:GAGA: 28/26612) Row 89965332 (NC_000012.12:52052304::GA 51/26612) Row 89965333 (NC_000012.12:52052304:GA: 27/26612)	-	Oct 13, 2022 (156)
37	14KJPN Submission ignored due to conflicting rows: Row 89965331 (NC_000012.12:52052304:GAGA: 28/26612) Row 89965332 (NC_000012.12:52052304::GA 51/26612) Row 89965333 (NC_000012.12:52052304:GA: 27/26612)	-	Oct 13, 2022 (156)
38	ALFA	NC_000012.12 - 52052305	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs567937028	Apr 01, 2015 (144)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4251849847	NC_000012.12:52052304:GAGAGAGA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGA	(self)
ss4251849846	NC_000012.12:52052304:GAGAGA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGA	(self)
ss5206332981	NC_000012.11:52446088:GAGA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGA	(self)
ss4251849845, ss5756128227	NC_000012.12:52052304:GAGA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGA	(self)
ss3971938582	NC_000012.12:52052306:GAGA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGA	(self)
ss5206332980	NC_000012.11:52446088:GA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGA	(self)
ss3693675469, ss4251849844, ss5485570252, ss5756128229	NC_000012.12:52052304:GA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGA	(self)
ss3971938580	NC_000012.12:52052308:GA:	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGA	(self)
ss5206332979	NC_000012.11:52446088::GA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
ss4251849822, ss5756128228	NC_000012.12:52052304::GA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
ss3693675464	NC_000012.12:52052306::GA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
ss3971938581	NC_000012.12:52052310::GA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
ss4251849823	NC_000012.12:52052304::GAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
ss4251849824	NC_000012.12:52052304::GAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
ss4251849825	NC_000012.12:52052304::GAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)
11119731965	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	NC_000012.12:52052304:GAGAGAGAGAGA… NC_000012.12:52052304:GAGAGAGAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1555168682

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs1555168682