Name: rs199605682
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs199605682

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr3:196749990-196750003 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₅ / delTTT / delTT / delT / …
del(T)₅ / delTTT / delTT / delT / dupT / dupTT / dupTTT
Variation Type: Indel Insertion and Deletion
Frequency: dupTT=0.2989 (2035/6808, ALFA)
dupTT=0.3638 (1822/5008, 1000G)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PAK2 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	6808	TTTTTTTTTTTTTT=0.6754	TTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0247, TTTTTTTTTTTTTTTT=0.2989, TTTTTTTTTTTTTTTTT=0.0010	0.576271	0.181818	0.241911	32
European	Sub	5856	TTTTTTTTTTTTTT=0.6235	TTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0285, TTTTTTTTTTTTTTTT=0.3468, TTTTTTTTTTTTTTTTT=0.0012	0.504332	0.212635	0.283032	32
African	Sub	466	TTTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	18	TTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	448	TTTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	64	TTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	46	TTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	18	TTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	46	TTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	222	TTTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	32	TTTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	122	TTTTTTTTTTTTTT=0.959	TTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.008, TTTTTTTTTTTTTTTT=0.033, TTTTTTTTTTTTTTTTT=0.000	0.966667	0.016667	0.016667	14

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	6808	(T)₁₄=0.6754	del(T)₅=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0247, dupTT=0.2989, dupTTT=0.0010
Allele Frequency Aggregator	European	Sub	5856	(T)₁₄=0.6235	del(T)₅=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0285, dupTT=0.3468, dupTTT=0.0012
Allele Frequency Aggregator	African	Sub	466	(T)₁₄=1.000	del(T)₅=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Latin American 2	Sub	222	(T)₁₄=1.000	del(T)₅=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	122	(T)₁₄=0.959	del(T)₅=0.000, delTT=0.000, delT=0.000, dupT=0.008, dupTT=0.033, dupTTT=0.000
Allele Frequency Aggregator	Asian	Sub	64	(T)₁₄=1.00	del(T)₅=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Latin American 1	Sub	46	(T)₁₄=1.00	del(T)₅=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	South Asian	Sub	32	(T)₁₄=1.00	del(T)₅=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
1000Genomes	Global	Study-wide	5008	- No frequency provided	dupTT=0.3638
1000Genomes	African	Sub	1322	- No frequency provided	dupTT=0.3971
1000Genomes	East Asian	Sub	1008	- No frequency provided	dupTT=0.1815
1000Genomes	Europe	Sub	1006	- No frequency provided	dupTT=0.4891
1000Genomes	South Asian	Sub	978	- No frequency provided	dupTT=0.381
1000Genomes	American	Sub	694	- No frequency provided	dupTT=0.359

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 3	NC_000003.12:g.196749999_196750003del
GRCh38.p14 chr 3	NC_000003.12:g.196750001_196750003del
GRCh38.p14 chr 3	NC_000003.12:g.196750002_196750003del
GRCh38.p14 chr 3	NC_000003.12:g.196750003del
GRCh38.p14 chr 3	NC_000003.12:g.196750003dup
GRCh38.p14 chr 3	NC_000003.12:g.196750002_196750003dup
GRCh38.p14 chr 3	NC_000003.12:g.196750001_196750003dup
GRCh37.p13 chr 3	NC_000003.11:g.196476870_196476874del
GRCh37.p13 chr 3	NC_000003.11:g.196476872_196476874del
GRCh37.p13 chr 3	NC_000003.11:g.196476873_196476874del
GRCh37.p13 chr 3	NC_000003.11:g.196476874del
GRCh37.p13 chr 3	NC_000003.11:g.196476874dup
GRCh37.p13 chr 3	NC_000003.11:g.196476873_196476874dup
GRCh37.p13 chr 3	NC_000003.11:g.196476872_196476874dup
PAK2 RefSeqGene	NG_009227.1:g.15143_15147del
PAK2 RefSeqGene	NG_009227.1:g.15145_15147del
PAK2 RefSeqGene	NG_009227.1:g.15146_15147del
PAK2 RefSeqGene	NG_009227.1:g.15147del
PAK2 RefSeqGene	NG_009227.1:g.15147dup
PAK2 RefSeqGene	NG_009227.1:g.15146_15147dup
PAK2 RefSeqGene	NG_009227.1:g.15145_15147dup

Gene: PAK2, p21 (RAC1) activated kinase 2 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PAK2 transcript	NM_002577.4:c.-22+9842_-2… NM_002577.4:c.-22+9842_-22+9846del	N/A	Intron Variant
PAK2 transcript variant X1	XM_011512870.3:c.	N/A	Genic Upstream Transcript Variant
PAK2 transcript variant X2	XM_047448218.1:c.	N/A	Genic Upstream Transcript Variant
PAK2 transcript variant X3	XM_047448219.1:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₄=	del(T)₅	delTTT	delTT	delT	dupT	dupTT	dupTTT
GRCh38.p14 chr 3	NC_000003.12:g.196749990_196750003=	NC_000003.12:g.196749999_196750003del	NC_000003.12:g.196750001_196750003del	NC_000003.12:g.196750002_196750003del	NC_000003.12:g.196750003del	NC_000003.12:g.196750003dup	NC_000003.12:g.196750002_196750003dup	NC_000003.12:g.196750001_196750003dup
GRCh37.p13 chr 3	NC_000003.11:g.196476861_196476874=	NC_000003.11:g.196476870_196476874del	NC_000003.11:g.196476872_196476874del	NC_000003.11:g.196476873_196476874del	NC_000003.11:g.196476874del	NC_000003.11:g.196476874dup	NC_000003.11:g.196476873_196476874dup	NC_000003.11:g.196476872_196476874dup
PAK2 RefSeqGene	NG_009227.1:g.15134_15147=	NG_009227.1:g.15143_15147del	NG_009227.1:g.15145_15147del	NG_009227.1:g.15146_15147del	NG_009227.1:g.15147del	NG_009227.1:g.15147dup	NG_009227.1:g.15146_15147dup	NG_009227.1:g.15145_15147dup
PAK2 transcript	NM_002577.4:c.-22+9833=	NM_002577.4:c.-22+9842_-22+9846del	NM_002577.4:c.-22+9844_-22+9846del	NM_002577.4:c.-22+9845_-22+9846del	NM_002577.4:c.-22+9846del	NM_002577.4:c.-22+9846dup	NM_002577.4:c.-22+9845_-22+9846dup	NM_002577.4:c.-22+9844_-22+9846dup
PAK2 transcript variant X1	XM_005269341.1:c.-22+9833=	XM_005269341.1:c.-22+9842_-22+9846del	XM_005269341.1:c.-22+9844_-22+9846del	XM_005269341.1:c.-22+9845_-22+9846del	XM_005269341.1:c.-22+9846del	XM_005269341.1:c.-22+9846dup	XM_005269341.1:c.-22+9845_-22+9846dup	XM_005269341.1:c.-22+9844_-22+9846dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

40 SubSNP, 21 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	GMI	ss288472273	May 04, 2012 (137)
2	PJP	ss295148557	May 31, 2013 (138)
3	SSMP	ss663394598	Apr 01, 2015 (144)
4	BILGI_BIOE	ss666242401	Apr 25, 2013 (138)
5	1000GENOMES	ss1371580097	Aug 21, 2014 (142)
6	EVA_UK10K_ALSPAC	ss1704005000	Apr 01, 2015 (144)
7	EVA_UK10K_ALSPAC	ss1704005002	Apr 01, 2015 (144)
8	EVA_UK10K_TWINSUK	ss1704005125	Apr 01, 2015 (144)
9	EVA_UK10K_TWINSUK	ss1704005127	Apr 01, 2015 (144)
10	SWEGEN	ss2993943992	Nov 08, 2017 (151)
11	SWEGEN	ss2993943993	Nov 08, 2017 (151)
12	SWEGEN	ss2993943994	Nov 08, 2017 (151)
13	URBANLAB	ss3647627095	Oct 12, 2018 (152)
14	EVA_DECODE	ss3711186967	Jul 13, 2019 (153)
15	EVA_DECODE	ss3711186968	Jul 13, 2019 (153)
16	EVA_DECODE	ss3711186969	Jul 13, 2019 (153)
17	EVA_DECODE	ss3711186970	Jul 13, 2019 (153)
18	PACBIO	ss3784588597	Jul 13, 2019 (153)
19	KHV_HUMAN_GENOMES	ss3804396046	Jul 13, 2019 (153)
20	EVA	ss3828314897	Apr 25, 2020 (154)
21	GNOMAD	ss4088798403	Apr 26, 2021 (155)
22	GNOMAD	ss4088798405	Apr 26, 2021 (155)
23	GNOMAD	ss4088798406	Apr 26, 2021 (155)
24	GNOMAD	ss4088798408	Apr 26, 2021 (155)
25	GNOMAD	ss4088798409	Apr 26, 2021 (155)
26	GNOMAD	ss4088798410	Apr 26, 2021 (155)
27	TOMMO_GENOMICS	ss5163681207	Apr 26, 2021 (155)
28	TOMMO_GENOMICS	ss5163681208	Apr 26, 2021 (155)
29	TOMMO_GENOMICS	ss5163681209	Apr 26, 2021 (155)
30	TOMMO_GENOMICS	ss5163681210	Apr 26, 2021 (155)
31	1000G_HIGH_COVERAGE	ss5257647018	Oct 13, 2022 (156)
32	1000G_HIGH_COVERAGE	ss5257647019	Oct 13, 2022 (156)
33	1000G_HIGH_COVERAGE	ss5257647020	Oct 13, 2022 (156)
34	HUGCELL_USP	ss5456621714	Oct 13, 2022 (156)
35	HUGCELL_USP	ss5456621715	Oct 13, 2022 (156)
36	HUGCELL_USP	ss5456621716	Oct 13, 2022 (156)
37	TOMMO_GENOMICS	ss5697177322	Oct 13, 2022 (156)
38	TOMMO_GENOMICS	ss5697177323	Oct 13, 2022 (156)
39	TOMMO_GENOMICS	ss5697177324	Oct 13, 2022 (156)
40	TOMMO_GENOMICS	ss5697177325	Oct 13, 2022 (156)
41	1000Genomes	NC_000003.11 - 196476861	Oct 12, 2018 (152)
42	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 10774852 (NC_000003.11:196476860::TT 1920/3854) Row 10774853 (NC_000003.11:196476860::TTT 187/3854)	-	Oct 12, 2018 (152)
43	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 10774852 (NC_000003.11:196476860::TT 1920/3854) Row 10774853 (NC_000003.11:196476860::TTT 187/3854)	-	Oct 12, 2018 (152)
44	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137185259 (NC_000003.12:196749989::T 11102/129786) Row 137185261 (NC_000003.12:196749989::TT 59823/129552) Row 137185262 (NC_000003.12:196749989::TTT 116/129872)...	-	Apr 26, 2021 (155)
45	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137185259 (NC_000003.12:196749989::T 11102/129786) Row 137185261 (NC_000003.12:196749989::TT 59823/129552) Row 137185262 (NC_000003.12:196749989::TTT 116/129872)...	-	Apr 26, 2021 (155)
46	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137185259 (NC_000003.12:196749989::T 11102/129786) Row 137185261 (NC_000003.12:196749989::TT 59823/129552) Row 137185262 (NC_000003.12:196749989::TTT 116/129872)...	-	Apr 26, 2021 (155)
47	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137185259 (NC_000003.12:196749989::T 11102/129786) Row 137185261 (NC_000003.12:196749989::TT 59823/129552) Row 137185262 (NC_000003.12:196749989::TTT 116/129872)...	-	Apr 26, 2021 (155)
48	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137185259 (NC_000003.12:196749989::T 11102/129786) Row 137185261 (NC_000003.12:196749989::TT 59823/129552) Row 137185262 (NC_000003.12:196749989::TTT 116/129872)...	-	Apr 26, 2021 (155)
49	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137185259 (NC_000003.12:196749989::T 11102/129786) Row 137185261 (NC_000003.12:196749989::TT 59823/129552) Row 137185262 (NC_000003.12:196749989::TTT 116/129872)...	-	Apr 26, 2021 (155)
50	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137185259 (NC_000003.12:196749989::T 11102/129786) Row 137185261 (NC_000003.12:196749989::TT 59823/129552) Row 137185262 (NC_000003.12:196749989::TTT 116/129872)...	-	Apr 26, 2021 (155)
51	8.3KJPN Submission ignored due to conflicting rows: Row 21650514 (NC_000003.11:196476860::TT 4777/16750) Row 21650515 (NC_000003.11:196476860::T 183/16750) Row 21650516 (NC_000003.11:196476860:T: 28/16750)...	-	Apr 26, 2021 (155)
52	8.3KJPN Submission ignored due to conflicting rows: Row 21650514 (NC_000003.11:196476860::TT 4777/16750) Row 21650515 (NC_000003.11:196476860::T 183/16750) Row 21650516 (NC_000003.11:196476860:T: 28/16750)...	-	Apr 26, 2021 (155)
53	8.3KJPN Submission ignored due to conflicting rows: Row 21650514 (NC_000003.11:196476860::TT 4777/16750) Row 21650515 (NC_000003.11:196476860::T 183/16750) Row 21650516 (NC_000003.11:196476860:T: 28/16750)...	-	Apr 26, 2021 (155)
54	8.3KJPN Submission ignored due to conflicting rows: Row 21650514 (NC_000003.11:196476860::TT 4777/16750) Row 21650515 (NC_000003.11:196476860::T 183/16750) Row 21650516 (NC_000003.11:196476860:T: 28/16750)...	-	Apr 26, 2021 (155)
55	14KJPN Submission ignored due to conflicting rows: Row 31014426 (NC_000003.12:196749989::TT 7860/28242) Row 31014427 (NC_000003.12:196749989::T 296/28242) Row 31014428 (NC_000003.12:196749989::TTT 11/28242)...	-	Oct 13, 2022 (156)
56	14KJPN Submission ignored due to conflicting rows: Row 31014426 (NC_000003.12:196749989::TT 7860/28242) Row 31014427 (NC_000003.12:196749989::T 296/28242) Row 31014428 (NC_000003.12:196749989::TTT 11/28242)...	-	Oct 13, 2022 (156)
57	14KJPN Submission ignored due to conflicting rows: Row 31014426 (NC_000003.12:196749989::TT 7860/28242) Row 31014427 (NC_000003.12:196749989::T 296/28242) Row 31014428 (NC_000003.12:196749989::TTT 11/28242)...	-	Oct 13, 2022 (156)
58	14KJPN Submission ignored due to conflicting rows: Row 31014426 (NC_000003.12:196749989::TT 7860/28242) Row 31014427 (NC_000003.12:196749989::T 296/28242) Row 31014428 (NC_000003.12:196749989::TTT 11/28242)...	-	Oct 13, 2022 (156)
59	UK 10K study - Twins Submission ignored due to conflicting rows: Row 10774852 (NC_000003.11:196476860::TT 1876/3708) Row 10774853 (NC_000003.11:196476860::TTT 160/3708)	-	Oct 12, 2018 (152)
60	UK 10K study - Twins Submission ignored due to conflicting rows: Row 10774852 (NC_000003.11:196476860::TT 1876/3708) Row 10774853 (NC_000003.11:196476860::TTT 160/3708)	-	Oct 12, 2018 (152)
61	ALFA	NC_000003.12 - 196749990	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs367545245	May 15, 2013 (138)
rs370214290	May 15, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4088798410	NC_000003.12:196749989:TTTTT:	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTT	(self)
11707099730	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTT	(self)
ss4088798409	NC_000003.12:196749989:TTT:	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss4088798408	NC_000003.12:196749989:TT:	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
11707099730	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3784588597, ss5163681209	NC_000003.11:196476860:T:	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3711186967, ss5697177325	NC_000003.12:196749989:T:	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
11707099730	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss288472273	NC_000003.10:197961271::T	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss2993943993, ss5163681208	NC_000003.11:196476860::T	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4088798403, ss5257647019, ss5456621715, ss5697177323	NC_000003.12:196749989::T	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
11707099730	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3711186968	NC_000003.12:196749990::T	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss295148557	NC_000003.10:197961258::TT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
19323627, ss663394598, ss666242401, ss1371580097, ss1704005000, ss1704005125, ss2993943992, ss3828314897, ss5163681207	NC_000003.11:196476860::TT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3647627095, ss3804396046, ss4088798405, ss5257647018, ss5456621714, ss5697177322	NC_000003.12:196749989::TT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
11707099730	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3711186969	NC_000003.12:196749990::TT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss1704005002, ss1704005127, ss2993943994, ss5163681210	NC_000003.11:196476860::TTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4088798406, ss5257647020, ss5456621716, ss5697177324	NC_000003.12:196749989::TTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
11707099730	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss3711186970	NC_000003.12:196749990::TTT	NC_000003.12:196749989:TTTTTTTTTTT… NC_000003.12:196749989:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs199605682

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs199605682