Name: rs3067562
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3067562

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr11:101082126-101082143 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(CT)₄ / del(CT)₃ / delCTCT / de…
del(CT)₄ / del(CT)₃ / delCTCT / delCT / dupCT / dupCTCT / dup(CT)₄
Variation Type: Indel Insertion and Deletion
Frequency: dupCT=0.05211 (824/15812, ALFA)
dupCT=0.103 (62/600, NorthernSweden)
dupCT=0.12 (5/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PGR : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	15812	CTCTCTCTCTCTCTCTCT=0.94770	CTCTCTCTCT=0.00000, CTCTCTCTCTCT=0.00000, CTCTCTCTCTCTCT=0.00000, CTCTCTCTCTCTCTCT=0.00000, CTCTCTCTCTCTCTCTCTCT=0.05211, CTCTCTCTCTCTCTCTCTCTCT=0.00019, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.00000	0.903961	0.007972	0.088068	32
European	Sub	11924	CTCTCTCTCTCTCTCTCT=0.93073	CTCTCTCTCT=0.00000, CTCTCTCTCTCT=0.00000, CTCTCTCTCTCTCT=0.00000, CTCTCTCTCTCTCTCT=0.00000, CTCTCTCTCTCTCTCTCTCT=0.06902, CTCTCTCTCTCTCTCTCTCTCT=0.00025, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.00000	0.872797	0.010572	0.11663	26
African	Sub	2728	CTCTCTCTCTCTCTCTCT=1.0000	CTCTCTCTCT=0.0000, CTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	112	CTCTCTCTCTCTCTCTCT=1.000	CTCTCTCTCT=0.000, CTCTCTCTCTCT=0.000, CTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	1.0	0.0	0.0	N/A
African American	Sub	2616	CTCTCTCTCTCTCTCTCT=1.0000	CTCTCTCTCT=0.0000, CTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCTCTCTCT=0.0000, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	106	CTCTCTCTCTCTCTCTCT=1.000	CTCTCTCTCT=0.000, CTCTCTCTCTCT=0.000, CTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	1.0	0.0	0.0	N/A
East Asian	Sub	80	CTCTCTCTCTCTCTCTCT=1.00	CTCTCTCTCT=0.00, CTCTCTCTCTCT=0.00, CTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	26	CTCTCTCTCTCTCTCTCT=1.00	CTCTCTCTCT=0.00, CTCTCTCTCTCT=0.00, CTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	118	CTCTCTCTCTCTCTCTCT=1.000	CTCTCTCTCT=0.000, CTCTCTCTCTCT=0.000, CTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	1.0	0.0	0.0	N/A
Latin American 2	Sub	448	CTCTCTCTCTCTCTCTCT=1.000	CTCTCTCTCT=0.000, CTCTCTCTCTCT=0.000, CTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	82	CTCTCTCTCTCTCTCTCT=1.00	CTCTCTCTCT=0.00, CTCTCTCTCTCT=0.00, CTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCTCT=0.00, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.00	1.0	0.0	0.0	N/A
Other	Sub	406	CTCTCTCTCTCTCTCTCT=0.998	CTCTCTCTCT=0.000, CTCTCTCTCTCT=0.000, CTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCT=0.002, CTCTCTCTCTCTCTCTCTCTCT=0.000, CTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	0.995074	0.0	0.004926	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	15812	(CT)₉=0.94770	del(CT)₄=0.00000, del(CT)₃=0.00000, delCTCT=0.00000, delCT=0.00000, dupCT=0.05211, dupCTCT=0.00019, dup(CT)₄=0.00000
Allele Frequency Aggregator	European	Sub	11924	(CT)₉=0.93073	del(CT)₄=0.00000, del(CT)₃=0.00000, delCTCT=0.00000, delCT=0.00000, dupCT=0.06902, dupCTCT=0.00025, dup(CT)₄=0.00000
Allele Frequency Aggregator	African	Sub	2728	(CT)₉=1.0000	del(CT)₄=0.0000, del(CT)₃=0.0000, delCTCT=0.0000, delCT=0.0000, dupCT=0.0000, dupCTCT=0.0000, dup(CT)₄=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	448	(CT)₉=1.000	del(CT)₄=0.000, del(CT)₃=0.000, delCTCT=0.000, delCT=0.000, dupCT=0.000, dupCTCT=0.000, dup(CT)₄=0.000
Allele Frequency Aggregator	Other	Sub	406	(CT)₉=0.998	del(CT)₄=0.000, del(CT)₃=0.000, delCTCT=0.000, delCT=0.000, dupCT=0.002, dupCTCT=0.000, dup(CT)₄=0.000
Allele Frequency Aggregator	Latin American 1	Sub	118	(CT)₉=1.000	del(CT)₄=0.000, del(CT)₃=0.000, delCTCT=0.000, delCT=0.000, dupCT=0.000, dupCTCT=0.000, dup(CT)₄=0.000
Allele Frequency Aggregator	Asian	Sub	106	(CT)₉=1.000	del(CT)₄=0.000, del(CT)₃=0.000, delCTCT=0.000, delCT=0.000, dupCT=0.000, dupCTCT=0.000, dup(CT)₄=0.000
Allele Frequency Aggregator	South Asian	Sub	82	(CT)₉=1.00	del(CT)₄=0.00, del(CT)₃=0.00, delCTCT=0.00, delCT=0.00, dupCT=0.00, dupCTCT=0.00, dup(CT)₄=0.00
Northern Sweden	ACPOP	Study-wide	600	- No frequency provided	dupCT=0.103
The Danish reference pan genome	Danish	Study-wide	40	- No frequency provided	dupCT=0.12

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 11	NC_000011.10:g.101082126CT[5]
GRCh38.p14 chr 11	NC_000011.10:g.101082126CT[6]
GRCh38.p14 chr 11	NC_000011.10:g.101082126CT[7]
GRCh38.p14 chr 11	NC_000011.10:g.101082126CT[8]
GRCh38.p14 chr 11	NC_000011.10:g.101082126CT[10]
GRCh38.p14 chr 11	NC_000011.10:g.101082126CT[11]
GRCh38.p14 chr 11	NC_000011.10:g.101082126CT[13]
GRCh37.p13 chr 11	NC_000011.9:g.100952857CT[5]
GRCh37.p13 chr 11	NC_000011.9:g.100952857CT[6]
GRCh37.p13 chr 11	NC_000011.9:g.100952857CT[7]
GRCh37.p13 chr 11	NC_000011.9:g.100952857CT[8]
GRCh37.p13 chr 11	NC_000011.9:g.100952857CT[10]
GRCh37.p13 chr 11	NC_000011.9:g.100952857CT[11]
GRCh37.p13 chr 11	NC_000011.9:g.100952857CT[13]
PGR RefSeqGene	NG_016475.1:g.52671AG[5]
PGR RefSeqGene	NG_016475.1:g.52671AG[6]
PGR RefSeqGene	NG_016475.1:g.52671AG[7]
PGR RefSeqGene	NG_016475.1:g.52671AG[8]
PGR RefSeqGene	NG_016475.1:g.52671AG[10]
PGR RefSeqGene	NG_016475.1:g.52671AG[11]
PGR RefSeqGene	NG_016475.1:g.52671AG[13]

Gene: PGR, progesterone receptor (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PGR transcript variant 2	NM_000926.4:c.1906+9617AG… NM_000926.4:c.1906+9617AG[5]	N/A	Intron Variant
PGR transcript variant 1	NM_001202474.3:c.1414+961… NM_001202474.3:c.1414+9617AG[5]	N/A	Intron Variant
PGR transcript variant 3	NM_001271161.2:c.1414+961… NM_001271161.2:c.1414+9617AG[5]	N/A	Intron Variant
PGR transcript variant 7	NM_001271162.2:c.124+9617… NM_001271162.2:c.124+9617AG[5]	N/A	Intron Variant
PGR transcript variant 4	NR_073141.3:n.	N/A	Intron Variant
PGR transcript variant 5	NR_073142.3:n.	N/A	Intron Variant
PGR transcript variant 6	NR_073143.3:n.	N/A	Intron Variant
PGR transcript variant X1	XM_006718858.4:c.1906+961… XM_006718858.4:c.1906+9617AG[5]	N/A	Intron Variant
PGR transcript variant X2	XM_011542869.3:c.	N/A	Genic Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(CT)₉=	del(CT)₄	del(CT)₃	delCTCT	delCT	dupCT	dupCTCT	dup(CT)₄
GRCh38.p14 chr 11	NC_000011.10:g.101082126_101082143=	NC_000011.10:g.101082126CT[5]	NC_000011.10:g.101082126CT[6]	NC_000011.10:g.101082126CT[7]	NC_000011.10:g.101082126CT[8]	NC_000011.10:g.101082126CT[10]	NC_000011.10:g.101082126CT[11]	NC_000011.10:g.101082126CT[13]
GRCh37.p13 chr 11	NC_000011.9:g.100952857_100952874=	NC_000011.9:g.100952857CT[5]	NC_000011.9:g.100952857CT[6]	NC_000011.9:g.100952857CT[7]	NC_000011.9:g.100952857CT[8]	NC_000011.9:g.100952857CT[10]	NC_000011.9:g.100952857CT[11]	NC_000011.9:g.100952857CT[13]
PGR RefSeqGene	NG_016475.1:g.52671_52688=	NG_016475.1:g.52671AG[5]	NG_016475.1:g.52671AG[6]	NG_016475.1:g.52671AG[7]	NG_016475.1:g.52671AG[8]	NG_016475.1:g.52671AG[10]	NG_016475.1:g.52671AG[11]	NG_016475.1:g.52671AG[13]
PGR transcript variant 2	NM_000926.4:c.1906+9634=	NM_000926.4:c.1906+9617AG[5]	NM_000926.4:c.1906+9617AG[6]	NM_000926.4:c.1906+9617AG[7]	NM_000926.4:c.1906+9617AG[8]	NM_000926.4:c.1906+9617AG[10]	NM_000926.4:c.1906+9617AG[11]	NM_000926.4:c.1906+9617AG[13]
PGR transcript variant 1	NM_001202474.3:c.1414+9634=	NM_001202474.3:c.1414+9617AG[5]	NM_001202474.3:c.1414+9617AG[6]	NM_001202474.3:c.1414+9617AG[7]	NM_001202474.3:c.1414+9617AG[8]	NM_001202474.3:c.1414+9617AG[10]	NM_001202474.3:c.1414+9617AG[11]	NM_001202474.3:c.1414+9617AG[13]
PGR transcript variant 3	NM_001271161.2:c.1414+9634=	NM_001271161.2:c.1414+9617AG[5]	NM_001271161.2:c.1414+9617AG[6]	NM_001271161.2:c.1414+9617AG[7]	NM_001271161.2:c.1414+9617AG[8]	NM_001271161.2:c.1414+9617AG[10]	NM_001271161.2:c.1414+9617AG[11]	NM_001271161.2:c.1414+9617AG[13]
PGR transcript variant 7	NM_001271162.1:c.124+9634=	NM_001271162.1:c.124+9617AG[5]	NM_001271162.1:c.124+9617AG[6]	NM_001271162.1:c.124+9617AG[7]	NM_001271162.1:c.124+9617AG[8]	NM_001271162.1:c.124+9617AG[10]	NM_001271162.1:c.124+9617AG[11]	NM_001271162.1:c.124+9617AG[13]
PGR transcript variant 7	NM_001271162.2:c.124+9634=	NM_001271162.2:c.124+9617AG[5]	NM_001271162.2:c.124+9617AG[6]	NM_001271162.2:c.124+9617AG[7]	NM_001271162.2:c.124+9617AG[8]	NM_001271162.2:c.124+9617AG[10]	NM_001271162.2:c.124+9617AG[11]	NM_001271162.2:c.124+9617AG[13]
PGR transcript variant X1	XM_006718858.4:c.1906+9634=	XM_006718858.4:c.1906+9617AG[5]	XM_006718858.4:c.1906+9617AG[6]	XM_006718858.4:c.1906+9617AG[7]	XM_006718858.4:c.1906+9617AG[8]	XM_006718858.4:c.1906+9617AG[10]	XM_006718858.4:c.1906+9617AG[11]	XM_006718858.4:c.1906+9617AG[13]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

46 SubSNP, 22 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss4298920	Jan 05, 2002 (102)
2	ABI	ss39985772	Mar 14, 2006 (126)
3	1000GENOMES	ss327372507	Oct 12, 2018 (152)
4	1000GENOMES	ss327461961	Oct 12, 2018 (152)
5	1000GENOMES	ss327883532	Oct 12, 2018 (152)
6	LUNTER	ss552158448	Apr 25, 2013 (138)
7	LUNTER	ss552422803	Oct 12, 2018 (152)
8	LUNTER	ss553462080	Oct 12, 2018 (152)
9	SSMP	ss664016515	Apr 01, 2015 (144)
10	DDI	ss1536703297	Apr 01, 2015 (144)
11	EVA_GENOME_DK	ss1574405735	Apr 01, 2015 (144)
12	EVA_UK10K_ALSPAC	ss1707228982	Oct 12, 2018 (152)
13	EVA_UK10K_TWINSUK	ss1707229340	Oct 12, 2018 (152)
14	EVA_UK10K_TWINSUK	ss1710529189	Apr 01, 2015 (144)
15	EVA_UK10K_ALSPAC	ss1710529190	Apr 01, 2015 (144)
16	SWEGEN	ss3008665331	Nov 08, 2017 (151)
17	EVA_DECODE	ss3692460866	Jul 13, 2019 (153)
18	EVA_DECODE	ss3692460867	Jul 13, 2019 (153)
19	EVA_DECODE	ss3692460868	Jul 13, 2019 (153)
20	ACPOP	ss3738478739	Jul 13, 2019 (153)
21	PACBIO	ss3787047766	Jul 13, 2019 (153)
22	PACBIO	ss3792175017	Jul 13, 2019 (153)
23	PACBIO	ss3797057492	Jul 13, 2019 (153)
24	EVA	ss3832802797	Apr 26, 2020 (154)
25	EVA	ss3839962201	Apr 26, 2020 (154)
26	EVA	ss3845443332	Apr 26, 2020 (154)
27	GNOMAD	ss4241241843	Apr 26, 2021 (155)
28	GNOMAD	ss4241241844	Apr 26, 2021 (155)
29	GNOMAD	ss4241241846	Apr 26, 2021 (155)
30	GNOMAD	ss4241241847	Apr 26, 2021 (155)
31	GNOMAD	ss4241241848	Apr 26, 2021 (155)
32	GNOMAD	ss4241241849	Apr 26, 2021 (155)
33	TOPMED	ss4897427143	Apr 26, 2021 (155)
34	TOPMED	ss4897427144	Apr 26, 2021 (155)
35	TOPMED	ss4897427145	Apr 26, 2021 (155)
36	TOMMO_GENOMICS	ss5203570695	Apr 26, 2021 (155)
37	TOMMO_GENOMICS	ss5203570696	Apr 26, 2021 (155)
38	TOMMO_GENOMICS	ss5203570697	Apr 26, 2021 (155)
39	1000G_HIGH_COVERAGE	ss5288652819	Oct 16, 2022 (156)
40	1000G_HIGH_COVERAGE	ss5288652820	Oct 16, 2022 (156)
41	HUGCELL_USP	ss5483666814	Oct 16, 2022 (156)
42	TOMMO_GENOMICS	ss5751927105	Oct 16, 2022 (156)
43	TOMMO_GENOMICS	ss5751927106	Oct 16, 2022 (156)
44	TOMMO_GENOMICS	ss5751927108	Oct 16, 2022 (156)
45	EVA	ss5837130578	Oct 16, 2022 (156)
46	EVA	ss5837130579	Oct 16, 2022 (156)
47	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 30661352 (NC_000011.9:100952856::CT 560/3854) Row 30661353 (NC_000011.9:100952856:CT: 298/3854)	-	Oct 12, 2018 (152)
48	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 30661352 (NC_000011.9:100952856::CT 560/3854) Row 30661353 (NC_000011.9:100952856:CT: 298/3854)	-	Oct 12, 2018 (152)
49	The Danish reference pan genome	NC_000011.9 - 100952857	Apr 26, 2020 (154)
50	gnomAD - Genomes Submission ignored due to conflicting rows: Row 389871643 (NC_000011.10:101082125::CT 16363/133946) Row 389871644 (NC_000011.10:101082125::CTCT 6/133998) Row 389871646 (NC_000011.10:101082125:CT: 140/132766)...	-	Apr 26, 2021 (155)
51	gnomAD - Genomes Submission ignored due to conflicting rows: Row 389871643 (NC_000011.10:101082125::CT 16363/133946) Row 389871644 (NC_000011.10:101082125::CTCT 6/133998) Row 389871646 (NC_000011.10:101082125:CT: 140/132766)...	-	Apr 26, 2021 (155)
52	gnomAD - Genomes Submission ignored due to conflicting rows: Row 389871643 (NC_000011.10:101082125::CT 16363/133946) Row 389871644 (NC_000011.10:101082125::CTCT 6/133998) Row 389871646 (NC_000011.10:101082125:CT: 140/132766)...	-	Apr 26, 2021 (155)
53	gnomAD - Genomes Submission ignored due to conflicting rows: Row 389871643 (NC_000011.10:101082125::CT 16363/133946) Row 389871644 (NC_000011.10:101082125::CTCT 6/133998) Row 389871646 (NC_000011.10:101082125:CT: 140/132766)...	-	Apr 26, 2021 (155)
54	gnomAD - Genomes Submission ignored due to conflicting rows: Row 389871643 (NC_000011.10:101082125::CT 16363/133946) Row 389871644 (NC_000011.10:101082125::CTCT 6/133998) Row 389871646 (NC_000011.10:101082125:CT: 140/132766)...	-	Apr 26, 2021 (155)
55	gnomAD - Genomes Submission ignored due to conflicting rows: Row 389871643 (NC_000011.10:101082125::CT 16363/133946) Row 389871644 (NC_000011.10:101082125::CTCT 6/133998) Row 389871646 (NC_000011.10:101082125:CT: 140/132766)...	-	Apr 26, 2021 (155)
56	Northern Sweden	NC_000011.9 - 100952857	Jul 13, 2019 (153)
57	8.3KJPN Submission ignored due to conflicting rows: Row 61540002 (NC_000011.9:100952856::CT 153/16758) Row 61540003 (NC_000011.9:100952856:CTCT: 1/16758) Row 61540004 (NC_000011.9:100952856:CT: 18/16758)	-	Apr 26, 2021 (155)
58	8.3KJPN Submission ignored due to conflicting rows: Row 61540002 (NC_000011.9:100952856::CT 153/16758) Row 61540003 (NC_000011.9:100952856:CTCT: 1/16758) Row 61540004 (NC_000011.9:100952856:CT: 18/16758)	-	Apr 26, 2021 (155)
59	8.3KJPN Submission ignored due to conflicting rows: Row 61540002 (NC_000011.9:100952856::CT 153/16758) Row 61540003 (NC_000011.9:100952856:CTCT: 1/16758) Row 61540004 (NC_000011.9:100952856:CT: 18/16758)	-	Apr 26, 2021 (155)
60	14KJPN Submission ignored due to conflicting rows: Row 85764209 (NC_000011.10:101082125::CT 269/28258) Row 85764210 (NC_000011.10:101082125:CTCT: 2/28258) Row 85764212 (NC_000011.10:101082125:CT: 21/28258)	-	Oct 16, 2022 (156)
61	14KJPN Submission ignored due to conflicting rows: Row 85764209 (NC_000011.10:101082125::CT 269/28258) Row 85764210 (NC_000011.10:101082125:CTCT: 2/28258) Row 85764212 (NC_000011.10:101082125:CT: 21/28258)	-	Oct 16, 2022 (156)
62	14KJPN Submission ignored due to conflicting rows: Row 85764209 (NC_000011.10:101082125::CT 269/28258) Row 85764210 (NC_000011.10:101082125:CTCT: 2/28258) Row 85764212 (NC_000011.10:101082125:CT: 21/28258)	-	Oct 16, 2022 (156)
63	TopMed Submission ignored due to conflicting rows: Row 112972799 (NC_000011.10:101082125::CTCTCTCT 1/264690) Row 112972800 (NC_000011.10:101082125:CTCTCT: 10/264690) Row 112972801 (NC_000011.10:101082125:CTCTCTCT: 6/264690)	-	Apr 26, 2021 (155)
64	TopMed Submission ignored due to conflicting rows: Row 112972799 (NC_000011.10:101082125::CTCTCTCT 1/264690) Row 112972800 (NC_000011.10:101082125:CTCTCT: 10/264690) Row 112972801 (NC_000011.10:101082125:CTCTCTCT: 6/264690)	-	Apr 26, 2021 (155)
65	TopMed Submission ignored due to conflicting rows: Row 112972799 (NC_000011.10:101082125::CTCTCTCT 1/264690) Row 112972800 (NC_000011.10:101082125:CTCTCT: 10/264690) Row 112972801 (NC_000011.10:101082125:CTCTCTCT: 6/264690)	-	Apr 26, 2021 (155)
66	UK 10K study - Twins Submission ignored due to conflicting rows: Row 30661352 (NC_000011.9:100952856::CT 591/3708) Row 30661353 (NC_000011.9:100952856:CT: 274/3708)	-	Oct 12, 2018 (152)
67	UK 10K study - Twins Submission ignored due to conflicting rows: Row 30661352 (NC_000011.9:100952856::CT 591/3708) Row 30661353 (NC_000011.9:100952856:CT: 274/3708)	-	Oct 12, 2018 (152)
68	ALFA	NC_000011.10 - 101082126	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4241241849, ss4897427145	NC_000011.10:101082125:CTCTCTCT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCT	(self)
10718726972	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCT	(self)
ss4241241848, ss4897427144	NC_000011.10:101082125:CTCTCT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCT	(self)
10718726972	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCT	(self)
ss5203570696	NC_000011.9:100952856:CTCT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCT	(self)
ss3692460868, ss4241241847, ss5288652820, ss5751927106	NC_000011.10:101082125:CTCT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCT	(self)
10718726972	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCT	(self)
ss327372507, ss327883532, ss552422803, ss553462080	NC_000011.8:100458066:CT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT	(self)
ss1707228982, ss1707229340, ss3832802797, ss5203570697, ss5837130579	NC_000011.9:100952856:CT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT	(self)
ss4241241846, ss5751927108	NC_000011.10:101082125:CT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT	(self)
10718726972	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT	(self)
ss3692460867	NC_000011.10:101082127:CT:	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT	(self)
ss327461961, ss552158448	NC_000011.8:100458066::CT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
316425, 11763604, ss664016515, ss1536703297, ss1574405735, ss3008665331, ss3738478739, ss3787047766, ss3792175017, ss3797057492, ss3839962201, ss5203570695, ss5837130578	NC_000011.9:100952856::CT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
ss1710529189, ss1710529190	NC_000011.9:100952858::CT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
ss3845443332, ss4241241843, ss5288652819, ss5483666814, ss5751927105	NC_000011.10:101082125::CT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
10718726972	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
ss3692460866	NC_000011.10:101082129::CT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
ss39985772	NT_033899.8:4515272::CT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
ss4298920	NT_033899.8:4515290::CT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCT	(self)
ss4241241844	NC_000011.10:101082125::CTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCTCT	(self)
10718726972	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCTCT	(self)
ss4897427143	NC_000011.10:101082125::CTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCTCTCTCT	(self)
10718726972	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCTCTCTCT	NC_000011.10:101082125:CTCTCTCTCTC… NC_000011.10:101082125:CTCTCTCTCTCTCTCTCT:CTCTCTCTCTCTCTCTCTCTCTCTCT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs3067562

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs3067562