Name: rs3075819
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3075819

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr6:113905416-113905436 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(CT)₄ / del(CT)₃ / delCTCT / de…
del(CT)₄ / del(CT)₃ / delCTCT / delCT / dupCT / dupCTCT / dup(CT)₃
Variation Type: Indel Insertion and Deletion
Frequency: delCT=0.484559 (128258/264690, TOPMED)
delCT=0.2756 (2151/7804, ALFA)
(TC)₁₀T=0.4824 (2269/4704, 1000G)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: LINC02880 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	7804	TCTCTCTCTCTCTCTCTCTCT=0.7204	TCTCTCTCTCTCT=0.0000, TCTCTCTCTCTCTCT=0.0000, TCTCTCTCTCTCTCTCT=0.0001, TCTCTCTCTCTCTCTCTCT=0.2756, TCTCTCTCTCTCTCTCTCTCTCT=0.0038, TCTCTCTCTCTCTCTCTCTCTCTCT=0.0000, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.0000	0.582278	0.134074	0.283648	32
European	Sub	6954	TCTCTCTCTCTCTCTCTCTCT=0.6869	TCTCTCTCTCTCT=0.0000, TCTCTCTCTCTCTCT=0.0000, TCTCTCTCTCTCTCTCT=0.0001, TCTCTCTCTCTCTCTCTCT=0.3086, TCTCTCTCTCTCTCTCTCTCTCT=0.0043, TCTCTCTCTCTCTCTCTCTCTCTCT=0.0000, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.0000	0.531921	0.150319	0.31776	32
African	Sub	416	TCTCTCTCTCTCTCTCTCTCT=1.000	TCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	18	TCTCTCTCTCTCTCTCTCTCT=1.00	TCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.00	1.0	0.0	0.0	N/A
African American	Sub	398	TCTCTCTCTCTCTCTCTCTCT=1.000	TCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	2	TCTCTCTCTCTCTCTCTCTCT=1.0	TCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.0	1.0	0.0	0.0	N/A
East Asian	Sub	0	TCTCTCTCTCTCTCTCTCTCT=0	TCTCTCTCTCTCT=0, TCTCTCTCTCTCTCT=0, TCTCTCTCTCTCTCTCT=0, TCTCTCTCTCTCTCTCTCT=0, TCTCTCTCTCTCTCTCTCTCTCT=0, TCTCTCTCTCTCTCTCTCTCTCTCT=0, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0	0	0	0	N/A
Other Asian	Sub	2	TCTCTCTCTCTCTCTCTCTCT=1.0	TCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCTCTCTCT=0.0, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	46	TCTCTCTCTCTCTCTCTCTCT=1.00	TCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	230	TCTCTCTCTCTCTCTCTCTCT=1.000	TCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	22	TCTCTCTCTCTCTCTCTCTCT=1.00	TCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCTCT=0.00, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.00	1.0	0.0	0.0	N/A
Other	Sub	134	TCTCTCTCTCTCTCTCTCTCT=0.963	TCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCT=0.037, TCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCT=0.000, TCTCTCTCTCTCTCTCTCTCTCTCTCT=0.000	0.940299	0.014925	0.044776	6

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	(TC)₁₀T=0.515441	delCT=0.484559
Allele Frequency Aggregator	Total	Global	7804	(TC)₁₀T=0.7204	del(CT)₄=0.0000, del(CT)₃=0.0000, delCTCT=0.0001, delCT=0.2756, dupCT=0.0038, dupCTCT=0.0000, dup(CT)₃=0.0000
Allele Frequency Aggregator	European	Sub	6954	(TC)₁₀T=0.6869	del(CT)₄=0.0000, del(CT)₃=0.0000, delCTCT=0.0001, delCT=0.3086, dupCT=0.0043, dupCTCT=0.0000, dup(CT)₃=0.0000
Allele Frequency Aggregator	African	Sub	416	(TC)₁₀T=1.000	del(CT)₄=0.000, del(CT)₃=0.000, delCTCT=0.000, delCT=0.000, dupCT=0.000, dupCTCT=0.000, dup(CT)₃=0.000
Allele Frequency Aggregator	Latin American 2	Sub	230	(TC)₁₀T=1.000	del(CT)₄=0.000, del(CT)₃=0.000, delCTCT=0.000, delCT=0.000, dupCT=0.000, dupCTCT=0.000, dup(CT)₃=0.000
Allele Frequency Aggregator	Other	Sub	134	(TC)₁₀T=0.963	del(CT)₄=0.000, del(CT)₃=0.000, delCTCT=0.000, delCT=0.037, dupCT=0.000, dupCTCT=0.000, dup(CT)₃=0.000
Allele Frequency Aggregator	Latin American 1	Sub	46	(TC)₁₀T=1.00	del(CT)₄=0.00, del(CT)₃=0.00, delCTCT=0.00, delCT=0.00, dupCT=0.00, dupCTCT=0.00, dup(CT)₃=0.00
Allele Frequency Aggregator	South Asian	Sub	22	(TC)₁₀T=1.00	del(CT)₄=0.00, del(CT)₃=0.00, delCTCT=0.00, delCT=0.00, dupCT=0.00, dupCTCT=0.00, dup(CT)₃=0.00
Allele Frequency Aggregator	Asian	Sub	2	(TC)₁₀T=1.0	del(CT)₄=0.0, del(CT)₃=0.0, delCTCT=0.0, delCT=0.0, dupCT=0.0, dupCTCT=0.0, dup(CT)₃=0.0
1000Genomes	Global	Study-wide	4704	(TC)₁₀T=0.4824	delCT=0.5176
1000Genomes	African	Sub	1306	(TC)₁₀T=0.3928	delCT=0.6072
1000Genomes	Europe	Sub	989	(TC)₁₀T=0.573	delCT=0.427
1000Genomes	South Asian	Sub	963	(TC)₁₀T=0.586	delCT=0.414
1000Genomes	East Asian	Sub	766	(TC)₁₀T=0.285	delCT=0.715
1000Genomes	American	Sub	680	(TC)₁₀T=0.599	delCT=0.401

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 6	NC_000006.12:g.113905417CT[6]
GRCh38.p14 chr 6	NC_000006.12:g.113905417CT[7]
GRCh38.p14 chr 6	NC_000006.12:g.113905417CT[8]
GRCh38.p14 chr 6	NC_000006.12:g.113905417CT[9]
GRCh38.p14 chr 6	NC_000006.12:g.113905417CT[11]
GRCh38.p14 chr 6	NC_000006.12:g.113905417CT[12]
GRCh38.p14 chr 6	NC_000006.12:g.113905417CT[13]
GRCh37.p13 chr 6	NC_000006.11:g.114226581CT[6]
GRCh37.p13 chr 6	NC_000006.11:g.114226581CT[7]
GRCh37.p13 chr 6	NC_000006.11:g.114226581CT[8]
GRCh37.p13 chr 6	NC_000006.11:g.114226581CT[9]
GRCh37.p13 chr 6	NC_000006.11:g.114226581CT[11]
GRCh37.p13 chr 6	NC_000006.11:g.114226581CT[12]
GRCh37.p13 chr 6	NC_000006.11:g.114226581CT[13]

Gene: LINC02880, long intergenic non-protein coding RNA 2880 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LINC02880 transcript	NR_027060.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(TC)₁₀T=	del(CT)₄	del(CT)₃	delCTCT	delCT	dupCT	dupCTCT	dup(CT)₃
GRCh38.p14 chr 6	NC_000006.12:g.113905416_113905436=	NC_000006.12:g.113905417CT[6]	NC_000006.12:g.113905417CT[7]	NC_000006.12:g.113905417CT[8]	NC_000006.12:g.113905417CT[9]	NC_000006.12:g.113905417CT[11]	NC_000006.12:g.113905417CT[12]	NC_000006.12:g.113905417CT[13]
GRCh37.p13 chr 6	NC_000006.11:g.114226580_114226600=	NC_000006.11:g.114226581CT[6]	NC_000006.11:g.114226581CT[7]	NC_000006.11:g.114226581CT[8]	NC_000006.11:g.114226581CT[9]	NC_000006.11:g.114226581CT[11]	NC_000006.11:g.114226581CT[12]	NC_000006.11:g.114226581CT[13]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

62 SubSNP, 26 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss4307233	Jan 05, 2002 (102)
2	HUMANGENOME_JCVI	ss95439928	Apr 25, 2013 (138)
3	GMI	ss287800323	May 09, 2011 (135)
4	GMI	ss288794799	May 04, 2012 (137)
5	PJP	ss295302204	May 09, 2011 (137)
6	PJP	ss295302205	May 31, 2013 (138)
7	1000GENOMES	ss326850812	May 09, 2011 (134)
8	1000GENOMES	ss326900046	May 09, 2011 (134)
9	LUNTER	ss551655436	Apr 25, 2013 (138)
10	LUNTER	ss553265588	Apr 25, 2013 (138)
11	TISHKOFF	ss554302533	Apr 25, 2013 (138)
12	BILGI_BIOE	ss666370841	Apr 25, 2013 (138)
13	1000GENOMES	ss1376024970	Aug 21, 2014 (142)
14	1000GENOMES	ss1376024971	Aug 21, 2014 (142)
15	DDI	ss1536519245	Apr 01, 2015 (144)
16	EVA_UK10K_ALSPAC	ss1705325484	Apr 01, 2015 (144)
17	EVA_UK10K_TWINSUK	ss1705325601	Apr 01, 2015 (144)
18	EVA_UK10K_TWINSUK	ss1710289187	Apr 01, 2015 (144)
19	EVA_UK10K_ALSPAC	ss1710289193	Apr 01, 2015 (144)
20	HAMMER_LAB	ss1804626378	Sep 08, 2015 (146)
21	SWEGEN	ss2999784264	Nov 08, 2017 (151)
22	MCHAISSO	ss3064221855	Nov 08, 2017 (151)
23	MCHAISSO	ss3066102179	Nov 08, 2017 (151)
24	URBANLAB	ss3648449810	Oct 12, 2018 (152)
25	EVA_DECODE	ss3718074575	Jul 13, 2019 (153)
26	EVA_DECODE	ss3718074576	Jul 13, 2019 (153)
27	EVA_DECODE	ss3718074577	Jul 13, 2019 (153)
28	EVA_DECODE	ss3718074578	Jul 13, 2019 (153)
29	ACPOP	ss3733890954	Jul 13, 2019 (153)
30	ACPOP	ss3733890955	Jul 13, 2019 (153)
31	KHV_HUMAN_GENOMES	ss3808698312	Jul 13, 2019 (153)
32	KHV_HUMAN_GENOMES	ss3808698313	Jul 13, 2019 (153)
33	EVA	ss3830144015	Apr 26, 2020 (154)
34	KOGIC	ss3959885048	Apr 26, 2020 (154)
35	KOGIC	ss3959885049	Apr 26, 2020 (154)
36	KOGIC	ss3959885050	Apr 26, 2020 (154)
37	GNOMAD	ss4149574445	Apr 26, 2021 (155)
38	GNOMAD	ss4149574446	Apr 26, 2021 (155)
39	GNOMAD	ss4149574448	Apr 26, 2021 (155)
40	GNOMAD	ss4149574449	Apr 26, 2021 (155)
41	GNOMAD	ss4149574450	Apr 26, 2021 (155)
42	GNOMAD	ss4149574451	Apr 26, 2021 (155)
43	TOPMED	ss4718184168	Apr 26, 2021 (155)
44	TOMMO_GENOMICS	ss5179462900	Apr 26, 2021 (155)
45	TOMMO_GENOMICS	ss5179462901	Apr 26, 2021 (155)
46	TOMMO_GENOMICS	ss5179462902	Apr 26, 2021 (155)
47	TOMMO_GENOMICS	ss5179462903	Apr 26, 2021 (155)
48	1000G_HIGH_COVERAGE	ss5269985114	Oct 13, 2022 (156)
49	1000G_HIGH_COVERAGE	ss5269985115	Oct 13, 2022 (156)
50	1000G_HIGH_COVERAGE	ss5269985116	Oct 13, 2022 (156)
51	1000G_HIGH_COVERAGE	ss5269985117	Oct 13, 2022 (156)
52	1000G_HIGH_COVERAGE	ss5269985118	Oct 13, 2022 (156)
53	HUGCELL_USP	ss5467462258	Oct 13, 2022 (156)
54	HUGCELL_USP	ss5467462259	Oct 13, 2022 (156)
55	HUGCELL_USP	ss5467462260	Oct 13, 2022 (156)
56	HUGCELL_USP	ss5467462261	Oct 13, 2022 (156)
57	TOMMO_GENOMICS	ss5718219821	Oct 13, 2022 (156)
58	TOMMO_GENOMICS	ss5718219822	Oct 13, 2022 (156)
59	TOMMO_GENOMICS	ss5718219823	Oct 13, 2022 (156)
60	TOMMO_GENOMICS	ss5718219824	Oct 13, 2022 (156)
61	EVA	ss5842846196	Oct 13, 2022 (156)
62	EVA	ss5842846197	Oct 13, 2022 (156)
63	1000Genomes	NC_000006.11 - 114226580	Oct 12, 2018 (152)
64	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 18783739 (NC_000006.11:114226579:TC: 1614/3854) Row 18783740 (NC_000006.11:114226579::TC 82/3854)	-	Oct 12, 2018 (152)
65	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 18783739 (NC_000006.11:114226579:TC: 1614/3854) Row 18783740 (NC_000006.11:114226579::TC 82/3854)	-	Oct 12, 2018 (152)
66	gnomAD - Genomes Submission ignored due to conflicting rows: Row 238041174 (NC_000006.12:113905415::TC 2698/136972) Row 238041175 (NC_000006.12:113905415::TCTC 98/136984) Row 238041177 (NC_000006.12:113905415:TC: 64940/136688)...	-	Apr 26, 2021 (155)
67	gnomAD - Genomes Submission ignored due to conflicting rows: Row 238041174 (NC_000006.12:113905415::TC 2698/136972) Row 238041175 (NC_000006.12:113905415::TCTC 98/136984) Row 238041177 (NC_000006.12:113905415:TC: 64940/136688)...	-	Apr 26, 2021 (155)
68	gnomAD - Genomes Submission ignored due to conflicting rows: Row 238041174 (NC_000006.12:113905415::TC 2698/136972) Row 238041175 (NC_000006.12:113905415::TCTC 98/136984) Row 238041177 (NC_000006.12:113905415:TC: 64940/136688)...	-	Apr 26, 2021 (155)
69	gnomAD - Genomes Submission ignored due to conflicting rows: Row 238041174 (NC_000006.12:113905415::TC 2698/136972) Row 238041175 (NC_000006.12:113905415::TCTC 98/136984) Row 238041177 (NC_000006.12:113905415:TC: 64940/136688)...	-	Apr 26, 2021 (155)
70	gnomAD - Genomes Submission ignored due to conflicting rows: Row 238041174 (NC_000006.12:113905415::TC 2698/136972) Row 238041175 (NC_000006.12:113905415::TCTC 98/136984) Row 238041177 (NC_000006.12:113905415:TC: 64940/136688)...	-	Apr 26, 2021 (155)
71	gnomAD - Genomes Submission ignored due to conflicting rows: Row 238041174 (NC_000006.12:113905415::TC 2698/136972) Row 238041175 (NC_000006.12:113905415::TCTC 98/136984) Row 238041177 (NC_000006.12:113905415:TC: 64940/136688)...	-	Apr 26, 2021 (155)
72	Korean Genome Project Submission ignored due to conflicting rows: Row 16263049 (NC_000006.12:113905415:TC: 1208/1832) Row 16263050 (NC_000006.12:113905417::TC 279/1832) Row 16263051 (NC_000006.12:113905417::TCTC 1/1832)	-	Apr 26, 2020 (154)
73	Korean Genome Project Submission ignored due to conflicting rows: Row 16263049 (NC_000006.12:113905415:TC: 1208/1832) Row 16263050 (NC_000006.12:113905417::TC 279/1832) Row 16263051 (NC_000006.12:113905417::TCTC 1/1832)	-	Apr 26, 2020 (154)
74	Korean Genome Project Submission ignored due to conflicting rows: Row 16263049 (NC_000006.12:113905415:TC: 1208/1832) Row 16263050 (NC_000006.12:113905417::TC 279/1832) Row 16263051 (NC_000006.12:113905417::TCTC 1/1832)	-	Apr 26, 2020 (154)
75	Northern Sweden Submission ignored due to conflicting rows: Row 7175819 (NC_000006.11:114226579:TC: 247/600) Row 7175820 (NC_000006.11:114226579::TC 4/600)	-	Jul 13, 2019 (153)
76	Northern Sweden Submission ignored due to conflicting rows: Row 7175819 (NC_000006.11:114226579:TC: 247/600) Row 7175820 (NC_000006.11:114226579::TC 4/600)	-	Jul 13, 2019 (153)
77	8.3KJPN Submission ignored due to conflicting rows: Row 37432207 (NC_000006.11:114226579:TC: 11851/16760) Row 37432208 (NC_000006.11:114226579::TC 2120/16760) Row 37432209 (NC_000006.11:114226579:TCTC: 12/16760)...	-	Apr 26, 2021 (155)
78	8.3KJPN Submission ignored due to conflicting rows: Row 37432207 (NC_000006.11:114226579:TC: 11851/16760) Row 37432208 (NC_000006.11:114226579::TC 2120/16760) Row 37432209 (NC_000006.11:114226579:TCTC: 12/16760)...	-	Apr 26, 2021 (155)
79	8.3KJPN Submission ignored due to conflicting rows: Row 37432207 (NC_000006.11:114226579:TC: 11851/16760) Row 37432208 (NC_000006.11:114226579::TC 2120/16760) Row 37432209 (NC_000006.11:114226579:TCTC: 12/16760)...	-	Apr 26, 2021 (155)
80	8.3KJPN Submission ignored due to conflicting rows: Row 37432207 (NC_000006.11:114226579:TC: 11851/16760) Row 37432208 (NC_000006.11:114226579::TC 2120/16760) Row 37432209 (NC_000006.11:114226579:TCTC: 12/16760)...	-	Apr 26, 2021 (155)
81	14KJPN Submission ignored due to conflicting rows: Row 52056925 (NC_000006.12:113905415:TC: 20102/28258) Row 52056926 (NC_000006.12:113905415::TC 3550/28258) Row 52056927 (NC_000006.12:113905415:TCTC: 12/28258)...	-	Oct 13, 2022 (156)
82	14KJPN Submission ignored due to conflicting rows: Row 52056925 (NC_000006.12:113905415:TC: 20102/28258) Row 52056926 (NC_000006.12:113905415::TC 3550/28258) Row 52056927 (NC_000006.12:113905415:TCTC: 12/28258)...	-	Oct 13, 2022 (156)
83	14KJPN Submission ignored due to conflicting rows: Row 52056925 (NC_000006.12:113905415:TC: 20102/28258) Row 52056926 (NC_000006.12:113905415::TC 3550/28258) Row 52056927 (NC_000006.12:113905415:TCTC: 12/28258)...	-	Oct 13, 2022 (156)
84	14KJPN Submission ignored due to conflicting rows: Row 52056925 (NC_000006.12:113905415:TC: 20102/28258) Row 52056926 (NC_000006.12:113905415::TC 3550/28258) Row 52056927 (NC_000006.12:113905415:TCTC: 12/28258)...	-	Oct 13, 2022 (156)
85	TopMed	NC_000006.12 - 113905416	Apr 26, 2021 (155)
86	UK 10K study - Twins Submission ignored due to conflicting rows: Row 18783739 (NC_000006.11:114226579:TC: 1530/3708) Row 18783740 (NC_000006.11:114226579::TC 79/3708)	-	Oct 12, 2018 (152)
87	UK 10K study - Twins Submission ignored due to conflicting rows: Row 18783739 (NC_000006.11:114226579:TC: 1530/3708) Row 18783740 (NC_000006.11:114226579::TC 79/3708)	-	Oct 12, 2018 (152)
88	ALFA	NC_000006.12 - 113905416	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs150501865	Sep 17, 2011 (135)
rs151107110	May 11, 2012 (137)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4149574451	NC_000006.12:113905415:TCTCTCTC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCT	(self)
12181549126	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCT	(self)
ss4149574450, ss5269985118	NC_000006.12:113905415:TCTCTC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCT	(self)
12181549126	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCT	(self)
ss2999784264, ss5179462902	NC_000006.11:114226579:TCTC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCT	(self)
ss3718074575, ss4149574449, ss5269985117, ss5467462260, ss5718219823	NC_000006.12:113905415:TCTC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCT	(self)
12181549126	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCT	(self)
ss288794799, ss326850812, ss326900046, ss551655436, ss553265588	NC_000006.10:114333272:TC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
ss295302204	NC_000006.10:114333280:TC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
ss295302205	NC_000006.10:114333283:CT:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
33709281, ss666370841, ss1376024970, ss1536519245, ss1705325484, ss1705325601, ss1804626378, ss3733890954, ss3830144015, ss5179462900, ss5842846196	NC_000006.11:114226579:TC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
ss554302533	NC_000006.11:114226598:CT:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
555561726, ss3064221855, ss3066102179, ss3648449810, ss3808698313, ss3959885048, ss4149574448, ss4718184168, ss5269985114, ss5467462258, ss5718219821	NC_000006.12:113905415:TC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
12181549126	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
ss3718074576	NC_000006.12:113905417:TC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
ss287800323	NT_025741.15:18396036:TC:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
ss95439928	NT_025741.15:18396055:CT:	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT	(self)
ss3733890955, ss5179462901, ss5842846197	NC_000006.11:114226579::TC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	(self)
ss1376024971, ss1710289187, ss1710289193	NC_000006.11:114226581::TC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	(self)
ss4149574445, ss5269985115, ss5467462259, ss5718219822	NC_000006.12:113905415::TC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	(self)
12181549126	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	(self)
ss3808698312, ss3959885049	NC_000006.12:113905417::TC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	(self)
ss3718074577	NC_000006.12:113905419::TC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	(self)
ss4307233	NT_025741.15:18396057::CT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT	(self)
ss5179462903	NC_000006.11:114226579::TCTC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT	(self)
ss4149574446, ss5269985116, ss5467462261, ss5718219824	NC_000006.12:113905415::TCTC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT	(self)
12181549126	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT	(self)
ss3959885050	NC_000006.12:113905417::TCTC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT	(self)
ss3718074578	NC_000006.12:113905419::TCTC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT	(self)
12181549126	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCT	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCT	(self)

Removed from this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Destination RSIDs
ss3509133654	NC_000006.12:113905415::TCTCTC	NC_000006.12:113905415:TCTCTCTCTCT… NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCT

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs3075819

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs3075819