Name: rs35836289
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs35836289

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr15:23449138-23449149 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delTTT / delTT / delT / dupT / dup…
delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₅ / ins(T)₂₄
Variation Type: Indel Insertion and Deletion
Frequency: (T)₁₂=0.3277 (1771/5404, ALFA)
dupT=0.4581 (2294/5008, 1000G)
(T)₁₂=0.1427 (550/3854, ALSPAC) (+ 2 more)
(T)₁₂=0.1421 (527/3708, TWINSUK)
(T)₁₂=0.15 (6/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: GOLGA6L2 : 2KB Upstream Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	5404	TTTTTTTTTTTT=0.3277	TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0007, TTTTTTTTTTTTT=0.6684, TTTTTTTTTTTTTTT=0.0017, TTTTTTTTTTTTTT=0.0015	0.246923	0.587094	0.165983	32
European	Sub	4500	TTTTTTTTTTTT=0.1940	TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0009, TTTTTTTTTTTTT=0.8013, TTTTTTTTTTTTTTT=0.0020, TTTTTTTTTTTTTT=0.0018	0.096007	0.705249	0.198744	32
African	Sub	834	TTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African Others	Sub	38	TTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	796	TTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Asian	Sub	0	TTTTTTTTTTTT=0	TTTTTTTTT=0, TTTTTTTTTT=0, TTTTTTTTTTT=0, TTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0	0	0	0	N/A
East Asian	Sub	0	TTTTTTTTTTTT=0	TTTTTTTTT=0, TTTTTTTTTT=0, TTTTTTTTTTT=0, TTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0	0	0	0	N/A
Other Asian	Sub	0	TTTTTTTTTTTT=0	TTTTTTTTT=0, TTTTTTTTTT=0, TTTTTTTTTTT=0, TTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 1	Sub	6	TTTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Latin American 2	Sub	10	TTTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
South Asian	Sub	2	TTTTTTTTTTTT=1.0	TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Other	Sub	52	TTTTTTTTTTTT=0.88	TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.12, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00	0.846154	0.076923	0.076923	6

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	5404	(T)₁₂=0.3277	delTTT=0.0000, delTT=0.0000, delT=0.0007, dupT=0.6684, dupTT=0.0015, dupTTT=0.0017
Allele Frequency Aggregator	European	Sub	4500	(T)₁₂=0.1940	delTTT=0.0000, delTT=0.0000, delT=0.0009, dupT=0.8013, dupTT=0.0018, dupTTT=0.0020
Allele Frequency Aggregator	African	Sub	834	(T)₁₂=1.000	delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	52	(T)₁₂=0.88	delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.12, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Latin American 2	Sub	10	(T)₁₂=1.0	delTTT=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dupTTT=0.0
Allele Frequency Aggregator	Latin American 1	Sub	6	(T)₁₂=1.0	delTTT=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dupTTT=0.0
Allele Frequency Aggregator	South Asian	Sub	2	(T)₁₂=1.0	delTTT=0.0, delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dupTTT=0.0
Allele Frequency Aggregator	Asian	Sub	0	(T)₁₂=0	delTTT=0, delTT=0, delT=0, dupT=0, dupTT=0, dupTTT=0
1000Genomes	Global	Study-wide	5008	- No frequency provided	dupT=0.4581
1000Genomes	African	Sub	1322	- No frequency provided	dupT=0.2088
1000Genomes	East Asian	Sub	1008	- No frequency provided	dupT=0.5536
1000Genomes	Europe	Sub	1006	- No frequency provided	dupT=0.5596
1000Genomes	South Asian	Sub	978	- No frequency provided	dupT=0.536
1000Genomes	American	Sub	694	- No frequency provided	dupT=0.537
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	- No frequency provided	dupT=0.8573
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	- No frequency provided	dupT=0.8579
The Danish reference pan genome	Danish	Study-wide	40	- No frequency provided	dupT=0.85

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 15	NC_000015.10:g.23449147_23449149del
GRCh38.p14 chr 15	NC_000015.10:g.23449148_23449149del
GRCh38.p14 chr 15	NC_000015.10:g.23449149del
GRCh38.p14 chr 15	NC_000015.10:g.23449149dup
GRCh38.p14 chr 15	NC_000015.10:g.23449148_23449149dup
GRCh38.p14 chr 15	NC_000015.10:g.23449147_23449149dup
GRCh38.p14 chr 15	NC_000015.10:g.23449145_23449149dup
GRCh38.p14 chr 15	NC_000015.10:g.23449149_23449150insTTTTTTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 15	NC_000015.9:g.23694294_23694296del
GRCh37.p13 chr 15	NC_000015.9:g.23694295_23694296del
GRCh37.p13 chr 15	NC_000015.9:g.23694296del
GRCh37.p13 chr 15	NC_000015.9:g.23694296dup
GRCh37.p13 chr 15	NC_000015.9:g.23694295_23694296dup
GRCh37.p13 chr 15	NC_000015.9:g.23694294_23694296dup
GRCh37.p13 chr 15	NC_000015.9:g.23694292_23694296dup
GRCh37.p13 chr 15	NC_000015.9:g.23694296_23694297insTTTTTTTTTTTTTTTTTTTTTTTT
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395339_4395341del
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395340_4395341del
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395341del
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395341dup
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395340_4395341dup
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395339_4395341dup
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395337_4395341dup
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395341_4395342insTTTTTTTTTTTTTTTTTTTTTTTT

Gene: GOLGA6L2, golgin A6 family like 2 (minus strand) : 2KB Upstream Variant

Molecule type	Change	Amino acid[Codon]	SO Term
GOLGA6L2 transcript	NM_001304388.2:c.	N/A	Upstream Transcript Variant
GOLGA6L2 transcript variant X1	XM_047432396.1:c.	N/A	Upstream Transcript Variant
GOLGA6L2 transcript variant X2	XM_047432397.1:c.	N/A	Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₂=	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₅	ins(T)₂₄
GRCh38.p14 chr 15	NC_000015.10:g.23449138_23449149=	NC_000015.10:g.23449147_23449149del	NC_000015.10:g.23449148_23449149del	NC_000015.10:g.23449149del	NC_000015.10:g.23449149dup	NC_000015.10:g.23449148_23449149dup	NC_000015.10:g.23449147_23449149dup	NC_000015.10:g.23449145_23449149dup	NC_000015.10:g.23449149_23449150insTTTTTTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 15	NC_000015.9:g.23694285_23694296=	NC_000015.9:g.23694294_23694296del	NC_000015.9:g.23694295_23694296del	NC_000015.9:g.23694296del	NC_000015.9:g.23694296dup	NC_000015.9:g.23694295_23694296dup	NC_000015.9:g.23694294_23694296dup	NC_000015.9:g.23694292_23694296dup	NC_000015.9:g.23694296_23694297insTTTTTTTTTTTTTTTTTTTTTTTT
GRCh38.p14 chr 15 fix patch HG2365_PATCH	NW_021160017.1:g.4395329_4395341=	NW_021160017.1:g.4395339_4395341del	NW_021160017.1:g.4395340_4395341del	NW_021160017.1:g.4395341del	NW_021160017.1:g.4395341dup	NW_021160017.1:g.4395340_4395341dup	NW_021160017.1:g.4395339_4395341dup	NW_021160017.1:g.4395337_4395341dup	NW_021160017.1:g.4395341_4395342insTTTTTTTTTTTTTTTTTTTTTTTT

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

56 SubSNP, 20 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	ABI	ss40576809	Mar 15, 2006 (126)
2	HGSV	ss80728037	Dec 14, 2007 (138)
3	HGSV	ss80843140	Dec 14, 2007 (138)
4	HGSV	ss82169954	Dec 14, 2007 (129)
5	BL	ss256156615	May 09, 2011 (135)
6	GMI	ss287924687	May 09, 2011 (138)
7	GMI	ss289246013	May 04, 2012 (138)
8	SSMP	ss664259715	Apr 01, 2015 (144)
9	BILGI_BIOE	ss666641876	Apr 25, 2013 (138)
10	1000GENOMES	ss1374641077	Aug 21, 2014 (142)
11	DDI	ss1536799412	Apr 01, 2015 (144)
12	EVA_GENOME_DK	ss1574829851	Apr 01, 2015 (144)
13	EVA_UK10K_ALSPAC	ss1708216075	Apr 01, 2015 (144)
14	EVA_UK10K_TWINSUK	ss1708216334	Apr 01, 2015 (144)
15	HAMMER_LAB	ss1808110668	Sep 08, 2015 (146)
16	SWEGEN	ss3012943827	Nov 08, 2017 (151)
17	MCHAISSO	ss3063810617	Nov 08, 2017 (151)
18	MCHAISSO	ss3064647260	Nov 08, 2017 (151)
19	MCHAISSO	ss3065577381	Jan 10, 2018 (151)
20	MCHAISSO	ss3065577382	Nov 08, 2017 (151)
21	BIOINF_KMB_FNS_UNIBA	ss3645371002	Oct 12, 2018 (152)
22	URBANLAB	ss3650306682	Oct 12, 2018 (152)
23	EVA_DECODE	ss3697511089	Jul 13, 2019 (153)
24	EVA_DECODE	ss3697511090	Jul 13, 2019 (153)
25	EVA_DECODE	ss3697511091	Jul 13, 2019 (153)
26	PACBIO	ss3787789009	Jul 13, 2019 (153)
27	PACBIO	ss3792809534	Jul 13, 2019 (153)
28	PACBIO	ss3797693951	Jul 13, 2019 (153)
29	KHV_HUMAN_GENOMES	ss3818158808	Jul 13, 2019 (153)
30	EVA	ss3834135635	Apr 27, 2020 (154)
31	EVA	ss3846150620	Apr 27, 2020 (154)
32	KOGIC	ss3975780848	Apr 27, 2020 (154)
33	KOGIC	ss3975780849	Apr 27, 2020 (154)
34	GNOMAD	ss4285333553	Apr 26, 2021 (155)
35	GNOMAD	ss4285333554	Apr 26, 2021 (155)
36	GNOMAD	ss4285333555	Apr 26, 2021 (155)
37	GNOMAD	ss4285333556	Apr 26, 2021 (155)
38	GNOMAD	ss4285333557	Apr 26, 2021 (155)
39	GNOMAD	ss4285333559	Apr 26, 2021 (155)
40	GNOMAD	ss4285333560	Apr 26, 2021 (155)
41	TOMMO_GENOMICS	ss5215238987	Apr 26, 2021 (155)
42	TOMMO_GENOMICS	ss5215238988	Apr 26, 2021 (155)
43	TOMMO_GENOMICS	ss5215238989	Apr 26, 2021 (155)
44	1000G_HIGH_COVERAGE	ss5297726204	Oct 16, 2022 (156)
45	1000G_HIGH_COVERAGE	ss5297726205	Oct 16, 2022 (156)
46	1000G_HIGH_COVERAGE	ss5297726206	Oct 16, 2022 (156)
47	HUGCELL_USP	ss5491559439	Oct 16, 2022 (156)
48	HUGCELL_USP	ss5491559440	Oct 16, 2022 (156)
49	TOMMO_GENOMICS	ss5768770066	Oct 16, 2022 (156)
50	TOMMO_GENOMICS	ss5768770067	Oct 16, 2022 (156)
51	TOMMO_GENOMICS	ss5768770068	Oct 16, 2022 (156)
52	EVA	ss5827928758	Oct 16, 2022 (156)
53	EVA	ss5827928759	Oct 16, 2022 (156)
54	EVA	ss5851210093	Oct 16, 2022 (156)
55	EVA	ss5875102077	Oct 16, 2022 (156)
56	EVA	ss5948505943	Oct 16, 2022 (156)
57	1000Genomes	NC_000015.9 - 23694285	Oct 12, 2018 (152)
58	The Avon Longitudinal Study of Parents and Children	NC_000015.9 - 23694285	Oct 12, 2018 (152)
59	The Danish reference pan genome	NC_000015.9 - 23694285	Apr 27, 2020 (154)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 463264391 (NC_000015.10:23449137::T 92307/133832) Row 463264392 (NC_000015.10:23449137::TT 295/133778) Row 463264393 (NC_000015.10:23449137::TTT 9/133900)...	-	Apr 26, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 463264391 (NC_000015.10:23449137::T 92307/133832) Row 463264392 (NC_000015.10:23449137::TT 295/133778) Row 463264393 (NC_000015.10:23449137::TTT 9/133900)...	-	Apr 26, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 463264391 (NC_000015.10:23449137::T 92307/133832) Row 463264392 (NC_000015.10:23449137::TT 295/133778) Row 463264393 (NC_000015.10:23449137::TTT 9/133900)...	-	Apr 26, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 463264391 (NC_000015.10:23449137::T 92307/133832) Row 463264392 (NC_000015.10:23449137::TT 295/133778) Row 463264393 (NC_000015.10:23449137::TTT 9/133900)...	-	Apr 26, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 463264391 (NC_000015.10:23449137::T 92307/133832) Row 463264392 (NC_000015.10:23449137::TT 295/133778) Row 463264393 (NC_000015.10:23449137::TTT 9/133900)...	-	Apr 26, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 463264391 (NC_000015.10:23449137::T 92307/133832) Row 463264392 (NC_000015.10:23449137::TT 295/133778) Row 463264393 (NC_000015.10:23449137::TTT 9/133900)...	-	Apr 26, 2021 (155)
66	gnomAD - Genomes Submission ignored due to conflicting rows: Row 463264391 (NC_000015.10:23449137::T 92307/133832) Row 463264392 (NC_000015.10:23449137::TT 295/133778) Row 463264393 (NC_000015.10:23449137::TTT 9/133900)...	-	Apr 26, 2021 (155)
67	Korean Genome Project Submission ignored due to conflicting rows: Row 32158849 (NC_000015.10:23449137::T 1378/1830) Row 32158850 (NC_000015.10:23449137::TT 124/1830)	-	Apr 27, 2020 (154)
68	Korean Genome Project Submission ignored due to conflicting rows: Row 32158849 (NC_000015.10:23449137::T 1378/1830) Row 32158850 (NC_000015.10:23449137::TT 124/1830)	-	Apr 27, 2020 (154)
69	8.3KJPN Submission ignored due to conflicting rows: Row 73208294 (NC_000015.9:23694284::T 13822/16760) Row 73208295 (NC_000015.9:23694284::TT 3/16760) Row 73208296 (NC_000015.9:23694284:T: 1/16760)	-	Apr 26, 2021 (155)
70	8.3KJPN Submission ignored due to conflicting rows: Row 73208294 (NC_000015.9:23694284::T 13822/16760) Row 73208295 (NC_000015.9:23694284::TT 3/16760) Row 73208296 (NC_000015.9:23694284:T: 1/16760)	-	Apr 26, 2021 (155)
71	8.3KJPN Submission ignored due to conflicting rows: Row 73208294 (NC_000015.9:23694284::T 13822/16760) Row 73208295 (NC_000015.9:23694284::TT 3/16760) Row 73208296 (NC_000015.9:23694284:T: 1/16760)	-	Apr 26, 2021 (155)
72	14KJPN Submission ignored due to conflicting rows: Row 102607170 (NC_000015.10:23449137::T 23191/28254) Row 102607171 (NC_000015.10:23449137:T: 2/28254) Row 102607172 (NC_000015.10:23449137::TT 16/28254)	-	Oct 16, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 102607170 (NC_000015.10:23449137::T 23191/28254) Row 102607171 (NC_000015.10:23449137:T: 2/28254) Row 102607172 (NC_000015.10:23449137::TT 16/28254)	-	Oct 16, 2022 (156)
74	14KJPN Submission ignored due to conflicting rows: Row 102607170 (NC_000015.10:23449137::T 23191/28254) Row 102607171 (NC_000015.10:23449137:T: 2/28254) Row 102607172 (NC_000015.10:23449137::TT 16/28254)	-	Oct 16, 2022 (156)
75	UK 10K study - Twins	NC_000015.9 - 23694285	Oct 12, 2018 (152)
76	ALFA	NC_000015.10 - 23449138	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs57850254	May 15, 2013 (138)
rs146825715	Sep 17, 2011 (135)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
1026720176	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTT	(self)
ss3065577381, ss4285333560	NC_000015.10:23449137:TT:	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTT	(self)
1026720176	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTT	(self)
ss82169954	NC_000015.8:21245388:T:	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3012943827, ss3834135635, ss5215238989	NC_000015.9:23694284:T:	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3697511089, ss4285333559, ss5297726206, ss5491559440, ss5768770067	NC_000015.10:23449137:T:	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
1026720176	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss256156615	NC_000015.8:21245377::T	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss289246013	NC_000015.8:21245389::T	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
65712830, 36492653, 476683, 36492653, ss664259715, ss666641876, ss1374641077, ss1536799412, ss1574829851, ss1708216075, ss1708216334, ss1808110668, ss3787789009, ss3792809534, ss3797693951, ss5215238987, ss5827928758, ss5948505943	NC_000015.9:23694284::T	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3063810617, ss3064647260, ss3065577382, ss3645371002, ss3650306682, ss3818158808, ss3846150620, ss3975780848, ss4285333553, ss5297726204, ss5491559439, ss5768770066, ss5851210093, ss5875102077	NC_000015.10:23449137::T	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
1026720176	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3697511090	NC_000015.10:23449138::T	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss40576809	NT_026446.14:129431::T	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss80728037, ss80843140, ss287924687	NT_026446.14:129443::T	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss5215238988, ss5827928759	NC_000015.9:23694284::TT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3975780849, ss4285333554, ss5297726205, ss5768770068	NC_000015.10:23449137::TT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
1026720176	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3697511091	NC_000015.10:23449138::TT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4285333555	NC_000015.10:23449137::TTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
1026720176	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4285333556	NC_000015.10:23449137::TTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4285333557	NC_000015.10:23449137::TTTTTTTTTTT… NC_000015.10:23449137::TTTTTTTTTTTTTTTTTTTTTTTT	NC_000015.10:23449137:TTTTTTTTTTTT… NC_000015.10:23449137:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs35836289

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs35836289