Name: rs55858449
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs55858449

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr3:195842117-195842135 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(A)₇ / del(A)₄ / delAAA / delAA…
del(A)₇ / del(A)₄ / delAAA / delAA / delA / dupA / dupAA / dupAAA / dup(A)₄ / dup(A)₆
Variation Type: Indel Insertion and Deletion
Frequency: del(A)₇=0.000004 (1/264690, TOPMED)
del(A)₇=0.0000 (0/5480, ALFA)
delAAA=0.0000 (0/5480, ALFA) (+ 8 more)
delAA=0.0000 (0/5480, ALFA)
delA=0.0000 (0/5480, ALFA)
dupA=0.0000 (0/5480, ALFA)
dupAA=0.0000 (0/5480, ALFA)
dup(A)₄=0.0000 (0/5480, ALFA)
dup(A)₆=0.0000 (0/5480, ALFA)
delA=0.3357 (1681/5008, 1000G)
delA=0.183 (88/482, NorthernSweden)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: LINC01983 : Intron Variant
LOC107984010 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	HWEP
Total	Global	5480	AAAAAAAAAAAAAAAAAAA=1.0000	AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.0000	1.0	N/A
European	Sub	4046	AAAAAAAAAAAAAAAAAAA=1.0000	AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.0000	1.0	N/A
African	Sub	586	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A
African Others	Sub	32	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
African American	Sub	554	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A
Asian	Sub	86	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
East Asian	Sub	70	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
Other Asian	Sub	16	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
Latin American 1	Sub	64	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
Latin American 2	Sub	424	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A
South Asian	Sub	58	AAAAAAAAAAAAAAAAAAA=1.00	AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00	1.0	N/A
Other	Sub	216	AAAAAAAAAAAAAAAAAAA=1.000	AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.000	1.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	(A)₁₉=0.999996	del(A)₇=0.000004
Allele Frequency Aggregator	Total	Global	5480	(A)₁₉=1.0000	del(A)₇=0.0000, delAAA=0.0000, delAA=0.0000, delA=0.0000, dupA=0.0000, dupAA=0.0000, dup(A)₄=0.0000, dup(A)₆=0.0000
Allele Frequency Aggregator	European	Sub	4046	(A)₁₉=1.0000	del(A)₇=0.0000, delAAA=0.0000, delAA=0.0000, delA=0.0000, dupA=0.0000, dupAA=0.0000, dup(A)₄=0.0000, dup(A)₆=0.0000
Allele Frequency Aggregator	African	Sub	586	(A)₁₉=1.000	del(A)₇=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAA=0.000, dup(A)₄=0.000, dup(A)₆=0.000
Allele Frequency Aggregator	Latin American 2	Sub	424	(A)₁₉=1.000	del(A)₇=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAA=0.000, dup(A)₄=0.000, dup(A)₆=0.000
Allele Frequency Aggregator	Other	Sub	216	(A)₁₉=1.000	del(A)₇=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAA=0.000, dup(A)₄=0.000, dup(A)₆=0.000
Allele Frequency Aggregator	Asian	Sub	86	(A)₁₉=1.00	del(A)₇=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dup(A)₄=0.00, dup(A)₆=0.00
Allele Frequency Aggregator	Latin American 1	Sub	64	(A)₁₉=1.00	del(A)₇=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dup(A)₄=0.00, dup(A)₆=0.00
Allele Frequency Aggregator	South Asian	Sub	58	(A)₁₉=1.00	del(A)₇=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dup(A)₄=0.00, dup(A)₆=0.00
1000Genomes	Global	Study-wide	5008	(A)₁₉=0.6643	delA=0.3357
1000Genomes	African	Sub	1322	(A)₁₉=0.4501	delA=0.5499
1000Genomes	East Asian	Sub	1008	(A)₁₉=0.8770	delA=0.1230
1000Genomes	Europe	Sub	1006	(A)₁₉=0.6670	delA=0.3330
1000Genomes	South Asian	Sub	978	(A)₁₉=0.689	delA=0.311
1000Genomes	American	Sub	694	(A)₁₉=0.725	delA=0.275
Northern Sweden	ACPOP	Study-wide	482	(A)₁₉=0.817	delA=0.183

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 3	NC_000003.12:g.195842129_195842135del
GRCh38.p14 chr 3	NC_000003.12:g.195842132_195842135del
GRCh38.p14 chr 3	NC_000003.12:g.195842133_195842135del
GRCh38.p14 chr 3	NC_000003.12:g.195842134_195842135del
GRCh38.p14 chr 3	NC_000003.12:g.195842135del
GRCh38.p14 chr 3	NC_000003.12:g.195842135dup
GRCh38.p14 chr 3	NC_000003.12:g.195842134_195842135dup
GRCh38.p14 chr 3	NC_000003.12:g.195842133_195842135dup
GRCh38.p14 chr 3	NC_000003.12:g.195842132_195842135dup
GRCh38.p14 chr 3	NC_000003.12:g.195842130_195842135dup
GRCh37.p13 chr 3	NC_000003.11:g.195569000_195569006del
GRCh37.p13 chr 3	NC_000003.11:g.195569003_195569006del
GRCh37.p13 chr 3	NC_000003.11:g.195569004_195569006del
GRCh37.p13 chr 3	NC_000003.11:g.195569005_195569006del
GRCh37.p13 chr 3	NC_000003.11:g.195569006del
GRCh37.p13 chr 3	NC_000003.11:g.195569006dup
GRCh37.p13 chr 3	NC_000003.11:g.195569005_195569006dup
GRCh37.p13 chr 3	NC_000003.11:g.195569004_195569006dup
GRCh37.p13 chr 3	NC_000003.11:g.195569003_195569006dup
GRCh37.p13 chr 3	NC_000003.11:g.195569001_195569006dup

Gene: LINC01983, long intergenic non-protein coding RNA 1983 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LINC01983 transcript variant 1	NR_134939.1:n.	N/A	Intron Variant
LINC01983 transcript variant 2	NR_134940.1:n.	N/A	Intron Variant

Gene: LOC107984010, uncharacterized LOC107984010 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC107984010 transcript	XR_924880.3:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₉=	del(A)₇	del(A)₄	delAAA	delAA	delA	dupA	dupAA	dupAAA	dup(A)₄	dup(A)₆
GRCh38.p14 chr 3	NC_000003.12:g.195842117_195842135=	NC_000003.12:g.195842129_195842135del	NC_000003.12:g.195842132_195842135del	NC_000003.12:g.195842133_195842135del	NC_000003.12:g.195842134_195842135del	NC_000003.12:g.195842135del	NC_000003.12:g.195842135dup	NC_000003.12:g.195842134_195842135dup	NC_000003.12:g.195842133_195842135dup	NC_000003.12:g.195842132_195842135dup	NC_000003.12:g.195842130_195842135dup
GRCh37.p13 chr 3	NC_000003.11:g.195568988_195569006=	NC_000003.11:g.195569000_195569006del	NC_000003.11:g.195569003_195569006del	NC_000003.11:g.195569004_195569006del	NC_000003.11:g.195569005_195569006del	NC_000003.11:g.195569006del	NC_000003.11:g.195569006dup	NC_000003.11:g.195569005_195569006dup	NC_000003.11:g.195569004_195569006dup	NC_000003.11:g.195569003_195569006dup	NC_000003.11:g.195569001_195569006dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

37 SubSNP, 17 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss78005571	Dec 06, 2007 (129)
2	HGSV	ss80415331	Dec 15, 2007 (130)
3	HGSV	ss82922052	Dec 15, 2007 (130)
4	HGSV	ss82965154	Dec 15, 2007 (130)
5	GMI	ss288471320	May 04, 2012 (137)
6	PJP	ss295148202	May 09, 2011 (137)
7	PJP	ss295148203	May 09, 2011 (134)
8	1000GENOMES	ss1371566080	Aug 21, 2014 (142)
9	MCHAISSO	ss3065927598	Nov 08, 2017 (151)
10	EVA_DECODE	ss3711171549	Jul 13, 2019 (153)
11	EVA_DECODE	ss3711171550	Jul 13, 2019 (153)
12	EVA_DECODE	ss3711171551	Jul 13, 2019 (153)
13	EVA_DECODE	ss3711171552	Jul 13, 2019 (153)
14	EVA_DECODE	ss3711171553	Jul 13, 2019 (153)
15	ACPOP	ss3730748822	Jul 13, 2019 (153)
16	KHV_HUMAN_GENOMES	ss3804386526	Jul 13, 2019 (153)
17	EVA	ss3828310929	Apr 25, 2020 (154)
18	GNOMAD	ss4088675337	Apr 26, 2021 (155)
19	GNOMAD	ss4088675338	Apr 26, 2021 (155)
20	GNOMAD	ss4088675339	Apr 26, 2021 (155)
21	GNOMAD	ss4088675340	Apr 26, 2021 (155)
22	GNOMAD	ss4088675341	Apr 26, 2021 (155)
23	GNOMAD	ss4088675342	Apr 26, 2021 (155)
24	GNOMAD	ss4088675343	Apr 26, 2021 (155)
25	TOPMED	ss4599168145	Apr 26, 2021 (155)
26	TOMMO_GENOMICS	ss5163640636	Apr 26, 2021 (155)
27	TOMMO_GENOMICS	ss5163640637	Apr 26, 2021 (155)
28	TOMMO_GENOMICS	ss5163640638	Apr 26, 2021 (155)
29	1000G_HIGH_COVERAGE	ss5257617751	Oct 17, 2022 (156)
30	1000G_HIGH_COVERAGE	ss5257617753	Oct 17, 2022 (156)
31	1000G_HIGH_COVERAGE	ss5257617754	Oct 17, 2022 (156)
32	HUGCELL_USP	ss5456598507	Oct 17, 2022 (156)
33	HUGCELL_USP	ss5456598508	Oct 17, 2022 (156)
34	HUGCELL_USP	ss5456598510	Oct 17, 2022 (156)
35	TOMMO_GENOMICS	ss5697122904	Oct 17, 2022 (156)
36	TOMMO_GENOMICS	ss5697122905	Oct 17, 2022 (156)
37	TOMMO_GENOMICS	ss5697122907	Oct 17, 2022 (156)
38	1000Genomes	NC_000003.11 - 195568988	Oct 12, 2018 (152)
39	gnomAD - Genomes Submission ignored due to conflicting rows: Row 136973017 (NC_000003.12:195842116::A 447/89430) Row 136973018 (NC_000003.12:195842116::AA 8/89542) Row 136973019 (NC_000003.12:195842116::AAA 1/89558)...	-	Apr 26, 2021 (155)
40	gnomAD - Genomes Submission ignored due to conflicting rows: Row 136973017 (NC_000003.12:195842116::A 447/89430) Row 136973018 (NC_000003.12:195842116::AA 8/89542) Row 136973019 (NC_000003.12:195842116::AAA 1/89558)...	-	Apr 26, 2021 (155)
41	gnomAD - Genomes Submission ignored due to conflicting rows: Row 136973017 (NC_000003.12:195842116::A 447/89430) Row 136973018 (NC_000003.12:195842116::AA 8/89542) Row 136973019 (NC_000003.12:195842116::AAA 1/89558)...	-	Apr 26, 2021 (155)
42	gnomAD - Genomes Submission ignored due to conflicting rows: Row 136973017 (NC_000003.12:195842116::A 447/89430) Row 136973018 (NC_000003.12:195842116::AA 8/89542) Row 136973019 (NC_000003.12:195842116::AAA 1/89558)...	-	Apr 26, 2021 (155)
43	gnomAD - Genomes Submission ignored due to conflicting rows: Row 136973017 (NC_000003.12:195842116::A 447/89430) Row 136973018 (NC_000003.12:195842116::AA 8/89542) Row 136973019 (NC_000003.12:195842116::AAA 1/89558)...	-	Apr 26, 2021 (155)
44	gnomAD - Genomes Submission ignored due to conflicting rows: Row 136973017 (NC_000003.12:195842116::A 447/89430) Row 136973018 (NC_000003.12:195842116::AA 8/89542) Row 136973019 (NC_000003.12:195842116::AAA 1/89558)...	-	Apr 26, 2021 (155)
45	gnomAD - Genomes Submission ignored due to conflicting rows: Row 136973017 (NC_000003.12:195842116::A 447/89430) Row 136973018 (NC_000003.12:195842116::AA 8/89542) Row 136973019 (NC_000003.12:195842116::AAA 1/89558)...	-	Apr 26, 2021 (155)
46	Northern Sweden	NC_000003.11 - 195568988	Jul 13, 2019 (153)
47	8.3KJPN Submission ignored due to conflicting rows: Row 21609943 (NC_000003.11:195568987:A: 1592/16720) Row 21609944 (NC_000003.11:195568987::A 18/16720) Row 21609945 (NC_000003.11:195568987:AA: 3/16720)	-	Apr 26, 2021 (155)
48	8.3KJPN Submission ignored due to conflicting rows: Row 21609943 (NC_000003.11:195568987:A: 1592/16720) Row 21609944 (NC_000003.11:195568987::A 18/16720) Row 21609945 (NC_000003.11:195568987:AA: 3/16720)	-	Apr 26, 2021 (155)
49	8.3KJPN Submission ignored due to conflicting rows: Row 21609943 (NC_000003.11:195568987:A: 1592/16720) Row 21609944 (NC_000003.11:195568987::A 18/16720) Row 21609945 (NC_000003.11:195568987:AA: 3/16720)	-	Apr 26, 2021 (155)
50	14KJPN Submission ignored due to conflicting rows: Row 30960008 (NC_000003.12:195842116:A: 2738/28254) Row 30960009 (NC_000003.12:195842116::A 15/28254) Row 30960011 (NC_000003.12:195842116:AA: 3/28254)	-	Oct 17, 2022 (156)
51	14KJPN Submission ignored due to conflicting rows: Row 30960008 (NC_000003.12:195842116:A: 2738/28254) Row 30960009 (NC_000003.12:195842116::A 15/28254) Row 30960011 (NC_000003.12:195842116:AA: 3/28254)	-	Oct 17, 2022 (156)
52	14KJPN Submission ignored due to conflicting rows: Row 30960008 (NC_000003.12:195842116:A: 2738/28254) Row 30960009 (NC_000003.12:195842116::A 15/28254) Row 30960011 (NC_000003.12:195842116:AA: 3/28254)	-	Oct 17, 2022 (156)
53	TopMed	NC_000003.12 - 195842117	Apr 26, 2021 (155)
54	ALFA	NC_000003.12 - 195842117	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs59142701	May 25, 2008 (130)
rs67614409	May 11, 2012 (137)
rs67614410	Feb 27, 2009 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
436545700, ss4599168145	NC_000003.12:195842116:AAAAAAA:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss3711171553, ss4088675343	NC_000003.12:195842116:AAAA:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss4088675342	NC_000003.12:195842116:AAA:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss3711171552	NC_000003.12:195842117:AAA:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss5163640638	NC_000003.11:195568987:AA:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss4088675341, ss5257617754, ss5456598510, ss5697122907	NC_000003.12:195842116:AA:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss3711171551	NC_000003.12:195842118:AA:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss78005571, ss80415331, ss82922052, ss82965154	NC_000003.9:197057315:A:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss288471320, ss295148202	NC_000003.10:197053384:A:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss295148203	NC_000003.10:197053402:A:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
19293656, 4033687, ss1371566080, ss3730748822, ss3828310929, ss5163640636	NC_000003.11:195568987:A:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss3065927598, ss3804386526, ss4088675340, ss5257617751, ss5456598508, ss5697122904	NC_000003.12:195842116:A:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss3711171550	NC_000003.12:195842119:A:	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss5163640637	NC_000003.11:195568987::A	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss4088675337, ss5257617753, ss5456598507, ss5697122905	NC_000003.12:195842116::A	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss3711171549	NC_000003.12:195842120::A	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA	(self)
ss4088675338	NC_000003.12:195842116::AA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
ss4088675339	NC_000003.12:195842116::AAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA	(self)
14138379568	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA	NC_000003.12:195842116:AAAAAAAAAAA… NC_000003.12:195842116:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs55858449

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs55858449