Name: rs5777007
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5777007

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr1:110242255-110242262 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delGGG / delGG / delG / dupG / dup…
delGGG / delGG / delG / dupG / dupGG / dupGGG / dup(G)₄
Variation Type: Indel Insertion and Deletion
Frequency: (G)₈=0.341090 (90283/264690, TOPMED)
(G)₈=0.3177 (2527/7954, ALFA)
(G)₈=0.1583 (709/4480, Estonian) (+ 5 more)
(G)₈=0.2291 (883/3854, ALSPAC)
(G)₈=0.2319 (860/3708, TWINSUK)
(G)₈=0.0101 (32/3182, 1000G)
(G)₈=0.228 (137/600, NorthernSweden)
(G)₈=0.23 (9/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: KCNC4 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	7954	GGGGGGGG=0.3177	GGGGG=0.0000, GGGGGG=0.0000, GGGGGGG=0.6823, GGGGGGGGG=0.0000, GGGGGGGGGG=0.0000, GGGGGGGGGGG=0.0000, GGGGGGGGGGGG=0.0000	0.193613	0.55821	0.248177	32
European	Sub	6946	GGGGGGGG=0.2283	GGGGG=0.0000, GGGGGG=0.0000, GGGGGGG=0.7717, GGGGGGGGG=0.0000, GGGGGGGGGG=0.0000, GGGGGGGGGGG=0.0000, GGGGGGGGGGGG=0.0000	0.090124	0.633458	0.276418	32
African	Sub	828	GGGGGGGG=0.955	GGGGG=0.000, GGGGGG=0.000, GGGGGGG=0.045, GGGGGGGGG=0.000, GGGGGGGGGG=0.000, GGGGGGGGGGG=0.000, GGGGGGGGGGGG=0.000	0.932367	0.021739	0.045894	32
African Others	Sub	40	GGGGGGGG=0.93	GGGGG=0.00, GGGGGG=0.00, GGGGGGG=0.07, GGGGGGGGG=0.00, GGGGGGGGGG=0.00, GGGGGGGGGGG=0.00, GGGGGGGGGGGG=0.00	0.9	0.05	0.05	5
African American	Sub	788	GGGGGGGG=0.957	GGGGG=0.000, GGGGGG=0.000, GGGGGGG=0.043, GGGGGGGGG=0.000, GGGGGGGGGG=0.000, GGGGGGGGGGG=0.000, GGGGGGGGGGGG=0.000	0.93401	0.020305	0.045685	32
Asian	Sub	18	GGGGGGGG=0.83	GGGGG=0.00, GGGGGG=0.00, GGGGGGG=0.17, GGGGGGGGG=0.00, GGGGGGGGGG=0.00, GGGGGGGGGGG=0.00, GGGGGGGGGGGG=0.00	0.777778	0.111111	0.111111	2
East Asian	Sub	14	GGGGGGGG=0.86	GGGGG=0.00, GGGGGG=0.00, GGGGGGG=0.14, GGGGGGGGG=0.00, GGGGGGGGGG=0.00, GGGGGGGGGGG=0.00, GGGGGGGGGGGG=0.00	0.857143	0.142857	0.0	4
Other Asian	Sub	4	GGGGGGGG=0.8	GGGGG=0.0, GGGGGG=0.0, GGGGGGG=0.2, GGGGGGGGG=0.0, GGGGGGGGGG=0.0, GGGGGGGGGGG=0.0, GGGGGGGGGGGG=0.0	0.5	0.0	0.5	0
Latin American 1	Sub	16	GGGGGGGG=1.00	GGGGG=0.00, GGGGGG=0.00, GGGGGGG=0.00, GGGGGGGGG=0.00, GGGGGGGGGG=0.00, GGGGGGGGGGG=0.00, GGGGGGGGGGGG=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	44	GGGGGGGG=1.00	GGGGG=0.00, GGGGGG=0.00, GGGGGGG=0.00, GGGGGGGGG=0.00, GGGGGGGGGG=0.00, GGGGGGGGGGG=0.00, GGGGGGGGGGGG=0.00	1.0	0.0	0.0	N/A
South Asian	Sub	8	GGGGGGGG=0.6	GGGGG=0.0, GGGGGG=0.0, GGGGGGG=0.4, GGGGGGGGG=0.0, GGGGGGGGGG=0.0, GGGGGGGGGGG=0.0, GGGGGGGGGGGG=0.0	0.5	0.25	0.25	1
Other	Sub	94	GGGGGGGG=0.74	GGGGG=0.00, GGGGGG=0.00, GGGGGGG=0.26, GGGGGGGGG=0.00, GGGGGGGGGG=0.00, GGGGGGGGGGG=0.00, GGGGGGGGGGGG=0.00	0.680851	0.191489	0.12766	12

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	(G)₈=0.341090	delG=0.658910
Allele Frequency Aggregator	Total	Global	7954	(G)₈=0.3177	delGGG=0.0000, delGG=0.0000, delG=0.6823, dupG=0.0000, dupGG=0.0000, dupGGG=0.0000, dup(G)₄=0.0000
Allele Frequency Aggregator	European	Sub	6946	(G)₈=0.2283	delGGG=0.0000, delGG=0.0000, delG=0.7717, dupG=0.0000, dupGG=0.0000, dupGGG=0.0000, dup(G)₄=0.0000
Allele Frequency Aggregator	African	Sub	828	(G)₈=0.955	delGGG=0.000, delGG=0.000, delG=0.045, dupG=0.000, dupGG=0.000, dupGGG=0.000, dup(G)₄=0.000
Allele Frequency Aggregator	Other	Sub	94	(G)₈=0.74	delGGG=0.00, delGG=0.00, delG=0.26, dupG=0.00, dupGG=0.00, dupGGG=0.00, dup(G)₄=0.00
Allele Frequency Aggregator	Latin American 2	Sub	44	(G)₈=1.00	delGGG=0.00, delGG=0.00, delG=0.00, dupG=0.00, dupGG=0.00, dupGGG=0.00, dup(G)₄=0.00
Allele Frequency Aggregator	Asian	Sub	18	(G)₈=0.83	delGGG=0.00, delGG=0.00, delG=0.17, dupG=0.00, dupGG=0.00, dupGGG=0.00, dup(G)₄=0.00
Allele Frequency Aggregator	Latin American 1	Sub	16	(G)₈=1.00	delGGG=0.00, delGG=0.00, delG=0.00, dupG=0.00, dupGG=0.00, dupGGG=0.00, dup(G)₄=0.00
Allele Frequency Aggregator	South Asian	Sub	8	(G)₈=0.6	delGGG=0.0, delGG=0.0, delG=0.4, dupG=0.0, dupGG=0.0, dupGGG=0.0, dup(G)₄=0.0
Genetic variation in the Estonian population	Estonian	Study-wide	4480	(G)₈=0.1583	delG=0.8417
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	(G)₈=0.2291	delG=0.7709
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	(G)₈=0.2319	delG=0.7681
1000Genomes	Global	Study-wide	3182	(G)₈=0.0101	delG=0.9899
1000Genomes	South Asian	Sub	796	(G)₈=0.000	delG=1.000
1000Genomes	Europe	Sub	746	(G)₈=0.000	delG=1.000
1000Genomes	East Asian	Sub	590	(G)₈=0.000	delG=1.000
1000Genomes	American	Sub	535	(G)₈=0.000	delG=1.000
1000Genomes	African	Sub	515	(G)₈=0.062	delG=0.938
Northern Sweden	ACPOP	Study-wide	600	(G)₈=0.228	delG=0.772
The Danish reference pan genome	Danish	Study-wide	40	(G)₈=0.23	delG=0.78

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 1	NC_000001.11:g.110242260_110242262del
GRCh38.p14 chr 1	NC_000001.11:g.110242261_110242262del
GRCh38.p14 chr 1	NC_000001.11:g.110242262del
GRCh38.p14 chr 1	NC_000001.11:g.110242262dup
GRCh38.p14 chr 1	NC_000001.11:g.110242261_110242262dup
GRCh38.p14 chr 1	NC_000001.11:g.110242260_110242262dup
GRCh38.p14 chr 1	NC_000001.11:g.110242259_110242262dup
GRCh37.p13 chr 1	NC_000001.10:g.110784882_110784884del
GRCh37.p13 chr 1	NC_000001.10:g.110784883_110784884del
GRCh37.p13 chr 1	NC_000001.10:g.110784884del
GRCh37.p13 chr 1	NC_000001.10:g.110784884dup
GRCh37.p13 chr 1	NC_000001.10:g.110784883_110784884dup
GRCh37.p13 chr 1	NC_000001.10:g.110784882_110784884dup
GRCh37.p13 chr 1	NC_000001.10:g.110784881_110784884dup

Gene: KCNC4, potassium voltage-gated channel subfamily C member 4 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
KCNC4 transcript variant 3	NM_001039574.3:c.	N/A	Genic Downstream Transcript Variant
KCNC4 transcript variant 5	NM_001377330.1:c.	N/A	Genic Downstream Transcript Variant
KCNC4 transcript variant 6	NM_001377331.1:c.	N/A	Genic Downstream Transcript Variant
KCNC4 transcript variant 1	NM_004978.6:c.	N/A	Genic Downstream Transcript Variant
KCNC4 transcript variant 4	NR_036437.2:n.	N/A	Genic Downstream Transcript Variant
KCNC4 transcript variant X1	XM_006710625.5:c.1819+160… XM_006710625.5:c.1819+16082_1819+16084del	N/A	Intron Variant
KCNC4 transcript variant X2	XM_011541401.4:c.1820-498… XM_011541401.4:c.1820-4989_1820-4987del	N/A	Intron Variant
KCNC4 transcript variant X3	XM_047419679.1:c.882+1608… XM_047419679.1:c.882+16082_882+16084del	N/A	Intron Variant
KCNC4 transcript variant X5	XM_047419680.1:c.883-4989… XM_047419680.1:c.883-4989_883-4987del	N/A	Intron Variant
KCNC4 transcript variant X4	XM_011541404.3:c.	N/A	Genic Downstream Transcript Variant
KCNC4 transcript variant X6	XM_024446790.2:c.	N/A	Genic Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(G)₈=	delGGG	delGG	delG	dupG	dupGG	dupGGG	dup(G)₄
GRCh38.p14 chr 1	NC_000001.11:g.110242255_110242262=	NC_000001.11:g.110242260_110242262del	NC_000001.11:g.110242261_110242262del	NC_000001.11:g.110242262del	NC_000001.11:g.110242262dup	NC_000001.11:g.110242261_110242262dup	NC_000001.11:g.110242260_110242262dup	NC_000001.11:g.110242259_110242262dup
GRCh37.p13 chr 1	NC_000001.10:g.110784877_110784884=	NC_000001.10:g.110784882_110784884del	NC_000001.10:g.110784883_110784884del	NC_000001.10:g.110784884del	NC_000001.10:g.110784884dup	NC_000001.10:g.110784883_110784884dup	NC_000001.10:g.110784882_110784884dup	NC_000001.10:g.110784881_110784884dup
KCNC4 transcript variant 1	NM_004978.5:c.9946_9953=	NM_004978.5:c.9951_9953del	NM_004978.5:c.9952_9953del	NM_004978.5:c.*9953del	NM_004978.5:c.*9953dup	NM_004978.5:c.9952_9953dup	NM_004978.5:c.9951_9953dup	NM_004978.5:c.9950_9953dup
KCNC4 transcript variant X1	XM_006710625.5:c.1819+16077=	XM_006710625.5:c.1819+16082_1819+16084del	XM_006710625.5:c.1819+16083_1819+16084del	XM_006710625.5:c.1819+16084del	XM_006710625.5:c.1819+16084dup	XM_006710625.5:c.1819+16083_1819+16084dup	XM_006710625.5:c.1819+16082_1819+16084dup	XM_006710625.5:c.1819+16081_1819+16084dup
KCNC4 transcript variant X2	XM_011541401.4:c.1820-4994=	XM_011541401.4:c.1820-4989_1820-4987del	XM_011541401.4:c.1820-4988_1820-4987del	XM_011541401.4:c.1820-4987del	XM_011541401.4:c.1820-4987dup	XM_011541401.4:c.1820-4988_1820-4987dup	XM_011541401.4:c.1820-4989_1820-4987dup	XM_011541401.4:c.1820-4990_1820-4987dup
KCNC4 transcript variant X3	XM_047419679.1:c.882+16077=	XM_047419679.1:c.882+16082_882+16084del	XM_047419679.1:c.882+16083_882+16084del	XM_047419679.1:c.882+16084del	XM_047419679.1:c.882+16084dup	XM_047419679.1:c.882+16083_882+16084dup	XM_047419679.1:c.882+16082_882+16084dup	XM_047419679.1:c.882+16081_882+16084dup
KCNC4 transcript variant X5	XM_047419680.1:c.883-4994=	XM_047419680.1:c.883-4989_883-4987del	XM_047419680.1:c.883-4988_883-4987del	XM_047419680.1:c.883-4987del	XM_047419680.1:c.883-4987dup	XM_047419680.1:c.883-4988_883-4987dup	XM_047419680.1:c.883-4989_883-4987dup	XM_047419680.1:c.883-4990_883-4987dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

69 SubSNP, 21 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	DEVINE_LAB	ss8034758	Mar 15, 2016 (147)
2	HGSV	ss81790923	Dec 14, 2007 (130)
3	HGSV	ss81952048	Dec 14, 2007 (130)
4	HUMANGENOME_JCVI	ss95240191	Feb 04, 2009 (130)
5	BCMHGSC_JDW	ss103489016	Mar 15, 2016 (147)
6	BUSHMAN	ss193121342	Jul 04, 2010 (132)
7	BL	ss255935250	May 09, 2011 (137)
8	GMI	ss287679228	May 09, 2011 (134)
9	GMI	ss288026203	May 04, 2012 (137)
10	PJP	ss294598114	May 09, 2011 (134)
11	PJP	ss294598115	May 09, 2011 (134)
12	1000GENOMES	ss326075541	May 09, 2011 (137)
13	1000GENOMES	ss326078030	May 09, 2011 (137)
14	1000GENOMES	ss326103303	May 09, 2011 (137)
15	LUNTER	ss550970948	Apr 25, 2013 (138)
16	LUNTER	ss550984603	Apr 25, 2013 (138)
17	LUNTER	ss552797116	Apr 25, 2013 (138)
18	TISHKOFF	ss553769665	Apr 25, 2013 (138)
19	SSMP	ss663109467	Apr 01, 2015 (144)
20	1000GENOMES	ss1367814479	Aug 21, 2014 (142)
21	1000GENOMES	ss1367814480	Aug 21, 2014 (142)
22	1000GENOMES	ss1367814481	Aug 21, 2014 (142)
23	DDI	ss1536243814	Apr 01, 2015 (144)
24	EVA_GENOME_DK	ss1574006944	Apr 01, 2015 (144)
25	EVA_UK10K_TWINSUK	ss1701096771	Apr 01, 2015 (144)
26	EVA_UK10K_ALSPAC	ss1701096773	Apr 01, 2015 (144)
27	HAMMER_LAB	ss1794920396	Sep 08, 2015 (146)
28	HAMMER_LAB	ss1794920398	Sep 08, 2015 (146)
29	JJLAB	ss2030342864	Sep 14, 2016 (149)
30	SYSTEMSBIOZJU	ss2624462301	Nov 08, 2017 (151)
31	SWEGEN	ss2987427368	Nov 08, 2017 (151)
32	MCHAISSO	ss3063603336	Nov 08, 2017 (151)
33	MCHAISSO	ss3064418685	Nov 08, 2017 (151)
34	MCHAISSO	ss3065321307	Nov 08, 2017 (151)
35	BEROUKHIMLAB	ss3644066907	Oct 11, 2018 (152)
36	BIOINF_KMB_FNS_UNIBA	ss3645065505	Oct 11, 2018 (152)
37	URBANLAB	ss3646750607	Oct 11, 2018 (152)
38	EGCUT_WGS	ss3655515513	Jul 12, 2019 (153)
39	EVA_DECODE	ss3687516594	Jul 12, 2019 (153)
40	EVA_DECODE	ss3687516595	Jul 12, 2019 (153)
41	ACPOP	ss3727382818	Jul 12, 2019 (153)
42	PACBIO	ss3783517329	Jul 12, 2019 (153)
43	PACBIO	ss3789159447	Jul 12, 2019 (153)
44	PACBIO	ss3794032359	Jul 12, 2019 (153)
45	KHV_HUMAN_GENOMES	ss3799667278	Jul 12, 2019 (153)
46	KHV_HUMAN_GENOMES	ss3799667279	Jul 12, 2019 (153)
47	EVA	ss3826365467	Apr 25, 2020 (154)
48	EVA	ss3836574173	Apr 25, 2020 (154)
49	EVA	ss3841982487	Apr 25, 2020 (154)
50	KOGIC	ss3945233239	Apr 25, 2020 (154)
51	KOGIC	ss3945233240	Apr 25, 2020 (154)
52	GNOMAD	ss4000320500	Apr 25, 2021 (155)
53	GNOMAD	ss4000320501	Apr 25, 2021 (155)
54	GNOMAD	ss4000320502	Apr 25, 2021 (155)
55	GNOMAD	ss4000320503	Apr 25, 2021 (155)
56	GNOMAD	ss4000320504	Apr 25, 2021 (155)
57	TOPMED	ss4463360784	Apr 25, 2021 (155)
58	TOMMO_GENOMICS	ss5145650282	Apr 25, 2021 (155)
59	TOMMO_GENOMICS	ss5145650283	Apr 25, 2021 (155)
60	1000G_HIGH_COVERAGE	ss5243585789	Oct 12, 2022 (156)
61	1000G_HIGH_COVERAGE	ss5243585790	Oct 12, 2022 (156)
62	1000G_HIGH_COVERAGE	ss5243585791	Oct 12, 2022 (156)
63	HUGCELL_USP	ss5444511940	Oct 12, 2022 (156)
64	HUGCELL_USP	ss5444511941	Oct 12, 2022 (156)
65	HUGCELL_USP	ss5444511942	Oct 12, 2022 (156)
66	TOMMO_GENOMICS	ss5670909114	Oct 12, 2022 (156)
67	TOMMO_GENOMICS	ss5670909115	Oct 12, 2022 (156)
68	EVA	ss5832474324	Oct 12, 2022 (156)
69	EVA	ss5938149915	Oct 12, 2022 (156)
70	1000Genomes	NC_000001.10 - 110784877	Oct 11, 2018 (152)
71	The Avon Longitudinal Study of Parents and Children	NC_000001.10 - 110784877	Oct 11, 2018 (152)
72	Genetic variation in the Estonian population	NC_000001.10 - 110784877	Oct 11, 2018 (152)
73	The Danish reference pan genome	NC_000001.10 - 110784877	Apr 25, 2020 (154)
74	gnomAD - Genomes Submission ignored due to conflicting rows: Row 22493231 (NC_000001.11:110242254::G 594/139840) Row 22493232 (NC_000001.11:110242254::GG 896/139820) Row 22493233 (NC_000001.11:110242254::GGG 7/139840)...	-	Apr 25, 2021 (155)
75	gnomAD - Genomes Submission ignored due to conflicting rows: Row 22493231 (NC_000001.11:110242254::G 594/139840) Row 22493232 (NC_000001.11:110242254::GG 896/139820) Row 22493233 (NC_000001.11:110242254::GGG 7/139840)...	-	Apr 25, 2021 (155)
76	gnomAD - Genomes Submission ignored due to conflicting rows: Row 22493231 (NC_000001.11:110242254::G 594/139840) Row 22493232 (NC_000001.11:110242254::GG 896/139820) Row 22493233 (NC_000001.11:110242254::GGG 7/139840)...	-	Apr 25, 2021 (155)
77	gnomAD - Genomes Submission ignored due to conflicting rows: Row 22493231 (NC_000001.11:110242254::G 594/139840) Row 22493232 (NC_000001.11:110242254::GG 896/139820) Row 22493233 (NC_000001.11:110242254::GGG 7/139840)...	-	Apr 25, 2021 (155)
78	gnomAD - Genomes Submission ignored due to conflicting rows: Row 22493231 (NC_000001.11:110242254::G 594/139840) Row 22493232 (NC_000001.11:110242254::GG 896/139820) Row 22493233 (NC_000001.11:110242254::GGG 7/139840)...	-	Apr 25, 2021 (155)
79	Korean Genome Project Submission ignored due to conflicting rows: Row 1611240 (NC_000001.11:110242254:G: 933/1832) Row 1611241 (NC_000001.11:110242255::G 28/1832)	-	Apr 25, 2020 (154)
80	Korean Genome Project Submission ignored due to conflicting rows: Row 1611240 (NC_000001.11:110242254:G: 933/1832) Row 1611241 (NC_000001.11:110242255::G 28/1832)	-	Apr 25, 2020 (154)
81	Northern Sweden	NC_000001.10 - 110784877	Jul 12, 2019 (153)
82	8.3KJPN Submission ignored due to conflicting rows: Row 3619589 (NC_000001.10:110784876:G: 9358/16760) Row 3619590 (NC_000001.10:110784876::G 96/16760)	-	Apr 25, 2021 (155)
83	8.3KJPN Submission ignored due to conflicting rows: Row 3619589 (NC_000001.10:110784876:G: 9358/16760) Row 3619590 (NC_000001.10:110784876::G 96/16760)	-	Apr 25, 2021 (155)
84	14KJPN Submission ignored due to conflicting rows: Row 4746218 (NC_000001.11:110242254:G: 15816/28256) Row 4746219 (NC_000001.11:110242254::G 166/28256)	-	Oct 12, 2022 (156)
85	14KJPN Submission ignored due to conflicting rows: Row 4746218 (NC_000001.11:110242254:G: 15816/28256) Row 4746219 (NC_000001.11:110242254::G 166/28256)	-	Oct 12, 2022 (156)
86	TopMed	NC_000001.11 - 110242255	Apr 25, 2021 (155)
87	UK 10K study - Twins	NC_000001.10 - 110784877	Oct 11, 2018 (152)
88	A Vietnamese Genetic Variation Database Submission ignored due to conflicting rows: Row 380776 (NC_000001.10:110784876::G 3/87) Row 380777 (NC_000001.10:110784876:G: 127/211)	-	Jul 12, 2019 (153)
89	A Vietnamese Genetic Variation Database Submission ignored due to conflicting rows: Row 380776 (NC_000001.10:110784876::G 3/87) Row 380777 (NC_000001.10:110784876:G: 127/211)	-	Jul 12, 2019 (153)
90	ALFA	NC_000001.11 - 110242255	Apr 25, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs33984097	Oct 15, 2006 (127)
rs57525597	May 23, 2008 (130)
rs79145526	Oct 04, 2011 (135)
rs376105739	May 13, 2013 (138)
rs869088300	Jul 19, 2016 (147)
rs68140966	Feb 27, 2009 (130)
rs68140967	Feb 27, 2009 (130)
rs147778817	May 04, 2012 (137)
rs376981379	May 13, 2013 (138)
rs993403758	Nov 08, 2017 (151)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
8791504537	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGG	(self)
8791504537	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGG	(self)
ss103489016	NT_032977.9:80756800:GG:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGG	(self)
ss81790923, ss81952048	NC_000001.8:110496925:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
ss255935250, ss288026203, ss294598114, ss326075541, ss326078030, ss326103303, ss550970948, ss550984603, ss552797116	NC_000001.9:110586399:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
ss294598115	NC_000001.9:110586406:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
3179769, 1756852, 1253761, 165896, 667683, 1756852, ss663109467, ss1367814479, ss1536243814, ss1574006944, ss1701096771, ss1701096773, ss1794920398, ss2030342864, ss2624462301, ss2987427368, ss3644066907, ss3655515513, ss3727382818, ss3783517329, ss3789159447, ss3794032359, ss3826365467, ss3836574173, ss5145650282, ss5832474324, ss5938149915	NC_000001.10:110784876:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
ss553769665	NC_000001.10:110784883:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
26967119, ss3063603336, ss3064418685, ss3065321307, ss3645065505, ss3646750607, ss3687516595, ss3799667279, ss3841982487, ss3945233239, ss4000320504, ss4463360784, ss5243585789, ss5444511940, ss5670909114	NC_000001.11:110242254:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
8791504537	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
ss287679228	NT_032977.9:80756794:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
ss8034758, ss95240191	NT_032977.9:80756801:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
ss193121342	NT_032977.10:109656266:G:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGG	(self)
ss5145650283	NC_000001.10:110784876::G	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGG	(self)
ss1367814480	NC_000001.10:110784877::G	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGG	(self)
ss4000320500, ss5243585791, ss5444511941, ss5670909115	NC_000001.11:110242254::G	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGG	(self)
8791504537	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGG	(self)
ss3687516594, ss3799667278, ss3945233240	NC_000001.11:110242255::G	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGG	(self)
ss1794920396	NC_000001.10:110784876::GG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGG	(self)
ss1367814481	NC_000001.10:110784877::GG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGG	(self)
ss4000320501, ss5243585790, ss5444511942	NC_000001.11:110242254::GG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGG	(self)
8791504537	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGG	(self)
ss4000320502	NC_000001.11:110242254::GGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGGG	(self)
8791504537	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGGG	(self)
ss4000320503	NC_000001.11:110242254::GGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGGGG	(self)
8791504537	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGGGG	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGGGGGGGG	(self)

Removed from this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Destination RSIDs
ss3086629138	NC_000001.11:110242254:GG:	NC_000001.11:110242254:GGGGGGGG:GG… NC_000001.11:110242254:GGGGGGGG:GGGGGG

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs5777007

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs5777007