Name: rs5804007
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5804007

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr13:60695197-60695209 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₈ / delTT / delT / dupT / du…
del(T)₈ / delTT / delT / dupT / dupTT / dupTTT / ins(T)₁₉
Variation Type: Indel Insertion and Deletion
Frequency: (T)₁₃=0.2548 (1276/5008, 1000G)
delT=0.1472 (676/4593, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: LINC00378 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	4593	TTTTTTTTTTTTT=0.1200	TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.1472, TTTTTTTTTTTTTT=0.7302, TTTTTTTTTTTTTTT=0.0026, TTTTTTTTTTTTTTTT=0.0000	0.039828	0.7169	0.243272	11
European	Sub	4451	TTTTTTTTTTTTT=0.0930	TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.1519, TTTTTTTTTTTTTT=0.7524, TTTTTTTTTTTTTTT=0.0027, TTTTTTTTTTTTTTTT=0.0000	0.039871	0.716595	0.243534	11
African	Sub	128	TTTTTTTTTTTTT=1.000	TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000	0	0	0	N/A
African Others	Sub	6	TTTTTTTTTTTTT=1.0	TTTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0	0	0	0	N/A
African American	Sub	122	TTTTTTTTTTTTT=1.000	TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000	0	0	0	N/A
Asian	Sub	0	TTTTTTTTTTTTT=0	TTTTTTTTTTT=0, TTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0	0	0	0	N/A
East Asian	Sub	0	TTTTTTTTTTTTT=0	TTTTTTTTTTT=0, TTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0	0	0	0	N/A
Other Asian	Sub	0	TTTTTTTTTTTTT=0	TTTTTTTTTTT=0, TTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 1	Sub	0	TTTTTTTTTTTTT=0	TTTTTTTTTTT=0, TTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0	0	0	0	N/A
Latin American 2	Sub	2	TTTTTTTTTTTTT=1.0	TTTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0	0	0	0	N/A
South Asian	Sub	0	TTTTTTTTTTTTT=0	TTTTTTTTTTT=0, TTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0	0	0	0	N/A
Other	Sub	12	TTTTTTTTTTTTT=0.58	TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.42, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00	0.0	1.0	0.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
1000Genomes	Global	Study-wide	5008	- No frequency provided	dupT=0.7452
1000Genomes	African	Sub	1322	- No frequency provided	dupT=0.5764
1000Genomes	East Asian	Sub	1008	- No frequency provided	dupT=0.8512
1000Genomes	Europe	Sub	1006	- No frequency provided	dupT=0.7545
1000Genomes	South Asian	Sub	978	- No frequency provided	dupT=0.820
1000Genomes	American	Sub	694	- No frequency provided	dupT=0.794
Allele Frequency Aggregator	Total	Global	4593	(T)₁₃=0.1200	delTT=0.0000, delT=0.1472, dupT=0.7302, dupTT=0.0026, dupTTT=0.0000
Allele Frequency Aggregator	European	Sub	4451	(T)₁₃=0.0930	delTT=0.0000, delT=0.1519, dupT=0.7524, dupTT=0.0027, dupTTT=0.0000
Allele Frequency Aggregator	African	Sub	128	(T)₁₃=1.000	delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	12	(T)₁₃=0.58	delTT=0.00, delT=0.00, dupT=0.42, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Latin American 2	Sub	2	(T)₁₃=1.0	delTT=0.0, delT=0.0, dupT=0.0, dupTT=0.0, dupTTT=0.0
Allele Frequency Aggregator	Latin American 1	Sub	0	(T)₁₃=0	delTT=0, delT=0, dupT=0, dupTT=0, dupTTT=0
Allele Frequency Aggregator	South Asian	Sub	0	(T)₁₃=0	delTT=0, delT=0, dupT=0, dupTT=0, dupTTT=0
Allele Frequency Aggregator	Asian	Sub	0	(T)₁₃=0	delTT=0, delT=0, dupT=0, dupTT=0, dupTTT=0

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 13	NC_000013.11:g.60695202_60695209del
GRCh38.p14 chr 13	NC_000013.11:g.60695208_60695209del
GRCh38.p14 chr 13	NC_000013.11:g.60695209del
GRCh38.p14 chr 13	NC_000013.11:g.60695209dup
GRCh38.p14 chr 13	NC_000013.11:g.60695208_60695209dup
GRCh38.p14 chr 13	NC_000013.11:g.60695207_60695209dup
GRCh38.p14 chr 13	NC_000013.11:g.60695209_60695210insTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 13	NC_000013.10:g.61269336_61269343del
GRCh37.p13 chr 13	NC_000013.10:g.61269342_61269343del
GRCh37.p13 chr 13	NC_000013.10:g.61269343del
GRCh37.p13 chr 13	NC_000013.10:g.61269343dup
GRCh37.p13 chr 13	NC_000013.10:g.61269342_61269343dup
GRCh37.p13 chr 13	NC_000013.10:g.61269341_61269343dup
GRCh37.p13 chr 13	NC_000013.10:g.61269343_61269344insTTTTTTTTTTTTTTTTTTT

Gene: LINC00378, long intergenic non-protein coding RNA 378 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LINC00378 transcript	NR_047003.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₃=	del(T)₈	delTT	delT	dupT	dupTT	dupTTT	ins(T)₁₉
GRCh38.p14 chr 13	NC_000013.11:g.60695197_60695209=	NC_000013.11:g.60695202_60695209del	NC_000013.11:g.60695208_60695209del	NC_000013.11:g.60695209del	NC_000013.11:g.60695209dup	NC_000013.11:g.60695208_60695209dup	NC_000013.11:g.60695207_60695209dup	NC_000013.11:g.60695209_60695210insTTTTTTTTTTTTTTTTTTT
GRCh37.p13 chr 13	NC_000013.10:g.61269331_61269343=	NC_000013.10:g.61269336_61269343del	NC_000013.10:g.61269342_61269343del	NC_000013.10:g.61269343del	NC_000013.10:g.61269343dup	NC_000013.10:g.61269342_61269343dup	NC_000013.10:g.61269341_61269343dup	NC_000013.10:g.61269343_61269344insTTTTTTTTTTTTTTTTTTT

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

54 SubSNP, 22 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	ABI	ss40390309	Mar 15, 2006 (138)
2	ABI	ss40400954	Mar 14, 2006 (126)
3	HUMANGENOME_JCVI	ss95622365	Feb 13, 2009 (130)
4	HUMANGENOME_JCVI	ss95765712	Mar 15, 2016 (147)
5	BCMHGSC_JDW	ss103547786	Mar 15, 2016 (147)
6	BUSHMAN	ss193322288	Jul 04, 2010 (132)
7	GMI	ss289181736	May 04, 2012 (137)
8	GMI	ss289181737	May 04, 2012 (138)
9	PJP	ss294801057	May 09, 2011 (134)
10	BILGI_BIOE	ss666601667	Apr 25, 2013 (138)
11	1000GENOMES	ss1373243393	Aug 21, 2014 (142)
12	EVA_UK10K_ALSPAC	ss1707812995	Apr 01, 2015 (144)
13	EVA_UK10K_TWINSUK	ss1707813596	Apr 01, 2015 (144)
14	EVA_UK10K_ALSPAC	ss1710605450	Oct 12, 2018 (152)
15	EVA_UK10K_TWINSUK	ss1710605453	Oct 12, 2018 (152)
16	SWEGEN	ss3011133034	Nov 08, 2017 (151)
17	MCHAISSO	ss3063767524	Nov 08, 2017 (151)
18	BEROUKHIMLAB	ss3644360493	Oct 12, 2018 (152)
19	EVA_DECODE	ss3695426765	Jul 13, 2019 (153)
20	EVA_DECODE	ss3695426766	Jul 13, 2019 (153)
21	EVA_DECODE	ss3695426767	Jul 13, 2019 (153)
22	ACPOP	ss3739806241	Jul 13, 2019 (153)
23	ACPOP	ss3739806242	Jul 13, 2019 (153)
24	PACBIO	ss3787477902	Jul 13, 2019 (153)
25	PACBIO	ss3792540878	Jul 13, 2019 (153)
26	PACBIO	ss3797424727	Jul 13, 2019 (153)
27	KHV_HUMAN_GENOMES	ss3816874140	Jul 13, 2019 (153)
28	KHV_HUMAN_GENOMES	ss3816874141	Jul 13, 2019 (153)
29	KHV_HUMAN_GENOMES	ss3816874142	Jul 13, 2019 (153)
30	EVA	ss3833581840	Apr 27, 2020 (154)
31	EVA	ss3840375182	Apr 27, 2020 (154)
32	EVA	ss3845861237	Apr 27, 2020 (154)
33	GNOMAD	ss4267097474	Apr 26, 2021 (155)
34	GNOMAD	ss4267097475	Apr 26, 2021 (155)
35	GNOMAD	ss4267097476	Apr 26, 2021 (155)
36	GNOMAD	ss4267097477	Apr 26, 2021 (155)
37	GNOMAD	ss4267097479	Apr 26, 2021 (155)
38	GNOMAD	ss4267097480	Apr 26, 2021 (155)
39	TOMMO_GENOMICS	ss5210311325	Apr 26, 2021 (155)
40	TOMMO_GENOMICS	ss5210311326	Apr 26, 2021 (155)
41	TOMMO_GENOMICS	ss5210311327	Apr 26, 2021 (155)
42	TOMMO_GENOMICS	ss5210311328	Apr 26, 2021 (155)
43	1000G_HIGH_COVERAGE	ss5293968487	Oct 16, 2022 (156)
44	1000G_HIGH_COVERAGE	ss5293968488	Oct 16, 2022 (156)
45	1000G_HIGH_COVERAGE	ss5293968489	Oct 16, 2022 (156)
46	HUGCELL_USP	ss5488306249	Oct 16, 2022 (156)
47	HUGCELL_USP	ss5488306250	Oct 16, 2022 (156)
48	TOMMO_GENOMICS	ss5762275098	Oct 16, 2022 (156)
49	TOMMO_GENOMICS	ss5762275099	Oct 16, 2022 (156)
50	TOMMO_GENOMICS	ss5762275100	Oct 16, 2022 (156)
51	TOMMO_GENOMICS	ss5762275101	Oct 16, 2022 (156)
52	EVA	ss5839572901	Oct 16, 2022 (156)
53	EVA	ss5839572902	Oct 16, 2022 (156)
54	EVA	ss5925376722	Oct 16, 2022 (156)
55	1000Genomes	NC_000013.10 - 61269331	Oct 12, 2018 (152)
56	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 34101378 (NC_000013.10:61269330::T 2810/3854) Row 34101379 (NC_000013.10:61269330:T: 811/3854)	-	Oct 12, 2018 (152)
57	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 34101378 (NC_000013.10:61269330::T 2810/3854) Row 34101379 (NC_000013.10:61269330:T: 811/3854)	-	Oct 12, 2018 (152)
58	gnomAD - Genomes Submission ignored due to conflicting rows: Row 432791106 (NC_000013.11:60695196::T 90889/134592) Row 432791107 (NC_000013.11:60695196::TT 457/134590) Row 432791108 (NC_000013.11:60695196::TTT 9/134728)...	-	Apr 26, 2021 (155)
59	gnomAD - Genomes Submission ignored due to conflicting rows: Row 432791106 (NC_000013.11:60695196::T 90889/134592) Row 432791107 (NC_000013.11:60695196::TT 457/134590) Row 432791108 (NC_000013.11:60695196::TTT 9/134728)...	-	Apr 26, 2021 (155)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 432791106 (NC_000013.11:60695196::T 90889/134592) Row 432791107 (NC_000013.11:60695196::TT 457/134590) Row 432791108 (NC_000013.11:60695196::TTT 9/134728)...	-	Apr 26, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 432791106 (NC_000013.11:60695196::T 90889/134592) Row 432791107 (NC_000013.11:60695196::TT 457/134590) Row 432791108 (NC_000013.11:60695196::TTT 9/134728)...	-	Apr 26, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 432791106 (NC_000013.11:60695196::T 90889/134592) Row 432791107 (NC_000013.11:60695196::TT 457/134590) Row 432791108 (NC_000013.11:60695196::TTT 9/134728)...	-	Apr 26, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 432791106 (NC_000013.11:60695196::T 90889/134592) Row 432791107 (NC_000013.11:60695196::TT 457/134590) Row 432791108 (NC_000013.11:60695196::TTT 9/134728)...	-	Apr 26, 2021 (155)
64	Northern Sweden Submission ignored due to conflicting rows: Row 13091106 (NC_000013.10:61269330::T 382/594) Row 13091107 (NC_000013.10:61269330:T: 117/594)	-	Jul 13, 2019 (153)
65	Northern Sweden Submission ignored due to conflicting rows: Row 13091106 (NC_000013.10:61269330::T 382/594) Row 13091107 (NC_000013.10:61269330:T: 117/594)	-	Jul 13, 2019 (153)
66	8.3KJPN Submission ignored due to conflicting rows: Row 68280632 (NC_000013.10:61269330::T 14923/16760) Row 68280633 (NC_000013.10:61269330:T: 1702/16760) Row 68280634 (NC_000013.10:61269330::TT 10/16760)...	-	Apr 26, 2021 (155)
67	8.3KJPN Submission ignored due to conflicting rows: Row 68280632 (NC_000013.10:61269330::T 14923/16760) Row 68280633 (NC_000013.10:61269330:T: 1702/16760) Row 68280634 (NC_000013.10:61269330::TT 10/16760)...	-	Apr 26, 2021 (155)
68	8.3KJPN Submission ignored due to conflicting rows: Row 68280632 (NC_000013.10:61269330::T 14923/16760) Row 68280633 (NC_000013.10:61269330:T: 1702/16760) Row 68280634 (NC_000013.10:61269330::TT 10/16760)...	-	Apr 26, 2021 (155)
69	8.3KJPN Submission ignored due to conflicting rows: Row 68280632 (NC_000013.10:61269330::T 14923/16760) Row 68280633 (NC_000013.10:61269330:T: 1702/16760) Row 68280634 (NC_000013.10:61269330::TT 10/16760)...	-	Apr 26, 2021 (155)
70	14KJPN Submission ignored due to conflicting rows: Row 96112202 (NC_000013.11:60695196:T: 2905/28256) Row 96112203 (NC_000013.11:60695196::T 25120/28256) Row 96112204 (NC_000013.11:60695196::TT 17/28256)...	-	Oct 16, 2022 (156)
71	14KJPN Submission ignored due to conflicting rows: Row 96112202 (NC_000013.11:60695196:T: 2905/28256) Row 96112203 (NC_000013.11:60695196::T 25120/28256) Row 96112204 (NC_000013.11:60695196::TT 17/28256)...	-	Oct 16, 2022 (156)
72	14KJPN Submission ignored due to conflicting rows: Row 96112202 (NC_000013.11:60695196:T: 2905/28256) Row 96112203 (NC_000013.11:60695196::T 25120/28256) Row 96112204 (NC_000013.11:60695196::TT 17/28256)...	-	Oct 16, 2022 (156)
73	14KJPN Submission ignored due to conflicting rows: Row 96112202 (NC_000013.11:60695196:T: 2905/28256) Row 96112203 (NC_000013.11:60695196::T 25120/28256) Row 96112204 (NC_000013.11:60695196::TT 17/28256)...	-	Oct 16, 2022 (156)
74	UK 10K study - Twins Submission ignored due to conflicting rows: Row 34101378 (NC_000013.10:61269330::T 2655/3708) Row 34101379 (NC_000013.10:61269330:T: 850/3708)	-	Oct 12, 2018 (152)
75	UK 10K study - Twins Submission ignored due to conflicting rows: Row 34101378 (NC_000013.10:61269330::T 2655/3708) Row 34101379 (NC_000013.10:61269330:T: 850/3708)	-	Oct 12, 2018 (152)
76	ALFA	NC_000013.11 - 60695197	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs74522107	Oct 17, 2011 (136)
rs5804008	May 15, 2013 (138)
rs35715157	May 11, 2012 (137)
rs71199020	May 11, 2012 (137)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss5210311328	NC_000013.10:61269330:TTTTTTTT:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTT	(self)
ss5762275101	NC_000013.11:60695196:TTTTTTTT:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTT
ss4267097480	NC_000013.11:60695196:TT:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
1500355653	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss103547786	NT_024524.14:42249341:TT:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss289181736	NC_000013.9:60167331:T:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss294801057	NC_000013.9:60167343:T:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss1707812995, ss1707813596, ss3011133034, ss3644360493, ss3739806242, ss3787477902, ss3792540878, ss3797424727, ss5210311326, ss5839572902	NC_000013.10:61269330:T:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3063767524, ss3695426765, ss3816874140, ss4267097479, ss5293968488, ss5488306249, ss5762275098	NC_000013.11:60695196:T:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
1500355653	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss95765712	NT_024524.14:42249330:T:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss40400954	NT_024524.14:42249331:T:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss95622365	NT_024524.14:42249342:T:	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss289181737	NC_000013.9:60167344::T	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
61375412, ss666601667, ss1373243393, ss3739806241, ss3833581840, ss5210311325, ss5839572901	NC_000013.10:61269330::T	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss1710605450, ss1710605453, ss3840375182	NC_000013.10:61269331::T	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3816874141, ss4267097474, ss5293968487, ss5488306250, ss5762275099, ss5925376722	NC_000013.11:60695196::T	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
1500355653	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3695426766, ss3816874142, ss3845861237	NC_000013.11:60695197::T	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss95765712	NT_024524.14:42249330:T:TT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss40390309	NT_024524.14:42249332::T	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss193322288	NT_024524.15:42287090::T	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss5210311327	NC_000013.10:61269330::TT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4267097475, ss5293968489, ss5762275100	NC_000013.11:60695196::TT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
1500355653	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3695426767	NC_000013.11:60695197::TT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4267097476	NC_000013.11:60695196::TTT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
1500355653	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss4267097477	NC_000013.11:60695196::TTTTTTTTTTT… NC_000013.11:60695196::TTTTTTTTTTTTTTTTTTT	NC_000013.11:60695196:TTTTTTTTTTTT… NC_000013.11:60695196:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs5804007

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs5804007