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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs58456397

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr20:38912504-38912523 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
del(A)10 / del(A)9 / del(A)8 / del…

del(A)10 / del(A)9 / del(A)8 / del(A)6 / del(A)5 / del(A)4 / delAAA / delAA / delA / dupA / dupAA / dupAAA / dup(A)4 / dup(A)5 / dup(A)6 / dup(A)7 / dup(A)8

Variation Type
Indel Insertion and Deletion
Frequency
del(A)8=0.000004 (1/264690, TOPMED)
dupA=0.03020 (398/13178, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
PPP1R16B : Intron Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 13178 AAAAAAAAAAAAAAAAAAAA=0.95872 AAAAAAAAAA=0.00000, AAAAAAAAAAA=0.00000, AAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAAAA=0.00933, AAAAAAAAAAAAAAAAAAAAA=0.03020, AAAAAAAAAAAAAAAAAAAAAA=0.00061, AAAAAAAAAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00076, AAAAAAAAAAAAAAAAAAAAAAAA=0.00038 0.946459 0.006693 0.046848 32
European Sub 10936 AAAAAAAAAAAAAAAAAAAA=0.95044 AAAAAAAAAA=0.00000, AAAAAAAAAAA=0.00000, AAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAAAA=0.01125, AAAAAAAAAAAAAAAAAAAAA=0.03621, AAAAAAAAAAAAAAAAAAAAAA=0.00073, AAAAAAAAAAAAAAAAAAAAAAA=0.00000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00091, AAAAAAAAAAAAAAAAAAAAAAAA=0.00046 0.93552 0.008107 0.056373 32
African Sub 1382 AAAAAAAAAAAAAAAAAAAA=1.0000 AAAAAAAAAA=0.0000, AAAAAAAAAAA=0.0000, AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAAA=0.0000 1.0 0.0 0.0 N/A
African Others Sub 58 AAAAAAAAAAAAAAAAAAAA=1.00 AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAA=0.00 1.0 0.0 0.0 N/A
African American Sub 1324 AAAAAAAAAAAAAAAAAAAA=1.0000 AAAAAAAAAA=0.0000, AAAAAAAAAAA=0.0000, AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAAAAAAAAA=0.0000 1.0 0.0 0.0 N/A
Asian Sub 54 AAAAAAAAAAAAAAAAAAAA=1.00 AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAA=0.00 1.0 0.0 0.0 N/A
East Asian Sub 42 AAAAAAAAAAAAAAAAAAAA=1.00 AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAA=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 12 AAAAAAAAAAAAAAAAAAAA=1.00 AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAA=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 80 AAAAAAAAAAAAAAAAAAAA=1.00 AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAA=0.00 1.0 0.0 0.0 N/A
Latin American 2 Sub 354 AAAAAAAAAAAAAAAAAAAA=1.000 AAAAAAAAAA=0.000, AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAA=0.000 1.0 0.0 0.0 N/A
South Asian Sub 68 AAAAAAAAAAAAAAAAAAAA=1.00 AAAAAAAAAA=0.00, AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAAAAAAAA=0.00 1.0 0.0 0.0 N/A
Other Sub 304 AAAAAAAAAAAAAAAAAAAA=0.993 AAAAAAAAAA=0.000, AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAA=0.007, AAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAAA=0.000, AAAAAAAAAAAAAAAAAAAAAAAA=0.000 0.986842 0.0 0.013158 0


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 (A)20=0.999996 del(A)8=0.000004
Allele Frequency Aggregator Total Global 13178 (A)20=0.95872 del(A)10=0.00000, del(A)9=0.00000, del(A)8=0.00000, del(A)4=0.00000, delAAA=0.00000, delAA=0.00000, delA=0.00933, dupA=0.03020, dupAA=0.00061, dupAAA=0.00000, dup(A)4=0.00038, dup(A)5=0.00076
Allele Frequency Aggregator European Sub 10936 (A)20=0.95044 del(A)10=0.00000, del(A)9=0.00000, del(A)8=0.00000, del(A)4=0.00000, delAAA=0.00000, delAA=0.00000, delA=0.01125, dupA=0.03621, dupAA=0.00073, dupAAA=0.00000, dup(A)4=0.00046, dup(A)5=0.00091
Allele Frequency Aggregator African Sub 1382 (A)20=1.0000 del(A)10=0.0000, del(A)9=0.0000, del(A)8=0.0000, del(A)4=0.0000, delAAA=0.0000, delAA=0.0000, delA=0.0000, dupA=0.0000, dupAA=0.0000, dupAAA=0.0000, dup(A)4=0.0000, dup(A)5=0.0000
Allele Frequency Aggregator Latin American 2 Sub 354 (A)20=1.000 del(A)10=0.000, del(A)9=0.000, del(A)8=0.000, del(A)4=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.000, dupAA=0.000, dupAAA=0.000, dup(A)4=0.000, dup(A)5=0.000
Allele Frequency Aggregator Other Sub 304 (A)20=0.993 del(A)10=0.000, del(A)9=0.000, del(A)8=0.000, del(A)4=0.000, delAAA=0.000, delAA=0.000, delA=0.000, dupA=0.007, dupAA=0.000, dupAAA=0.000, dup(A)4=0.000, dup(A)5=0.000
Allele Frequency Aggregator Latin American 1 Sub 80 (A)20=1.00 del(A)10=0.00, del(A)9=0.00, del(A)8=0.00, del(A)4=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00, dup(A)4=0.00, dup(A)5=0.00
Allele Frequency Aggregator South Asian Sub 68 (A)20=1.00 del(A)10=0.00, del(A)9=0.00, del(A)8=0.00, del(A)4=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00, dup(A)4=0.00, dup(A)5=0.00
Allele Frequency Aggregator Asian Sub 54 (A)20=1.00 del(A)10=0.00, del(A)9=0.00, del(A)8=0.00, del(A)4=0.00, delAAA=0.00, delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00, dup(A)4=0.00, dup(A)5=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 20 NC_000020.11:g.38912514_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912515_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912516_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912518_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912519_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912520_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912521_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912522_38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912523del
GRCh38.p14 chr 20 NC_000020.11:g.38912523dup
GRCh38.p14 chr 20 NC_000020.11:g.38912522_38912523dup
GRCh38.p14 chr 20 NC_000020.11:g.38912521_38912523dup
GRCh38.p14 chr 20 NC_000020.11:g.38912520_38912523dup
GRCh38.p14 chr 20 NC_000020.11:g.38912519_38912523dup
GRCh38.p14 chr 20 NC_000020.11:g.38912518_38912523dup
GRCh38.p14 chr 20 NC_000020.11:g.38912517_38912523dup
GRCh38.p14 chr 20 NC_000020.11:g.38912516_38912523dup
GRCh37.p13 chr 20 NC_000020.10:g.37541157_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541158_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541159_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541161_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541162_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541163_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541164_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541165_37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541166del
GRCh37.p13 chr 20 NC_000020.10:g.37541166dup
GRCh37.p13 chr 20 NC_000020.10:g.37541165_37541166dup
GRCh37.p13 chr 20 NC_000020.10:g.37541164_37541166dup
GRCh37.p13 chr 20 NC_000020.10:g.37541163_37541166dup
GRCh37.p13 chr 20 NC_000020.10:g.37541162_37541166dup
GRCh37.p13 chr 20 NC_000020.10:g.37541161_37541166dup
GRCh37.p13 chr 20 NC_000020.10:g.37541160_37541166dup
GRCh37.p13 chr 20 NC_000020.10:g.37541159_37541166dup
Gene: PPP1R16B, protein phosphatase 1 regulatory subunit 16B (plus strand)
Molecule type Change Amino acid[Codon] SO Term
PPP1R16B transcript variant 2 NM_001172735.3:c.1068+432…

NM_001172735.3:c.1068+4321_1068+4330del

N/A Intron Variant
PPP1R16B transcript variant 1 NM_015568.4:c.1194+4321_1…

NM_015568.4:c.1194+4321_1194+4330del

N/A Intron Variant
PPP1R16B transcript variant X1 XM_011528768.4:c.1206+432…

XM_011528768.4:c.1206+4321_1206+4330del

N/A Intron Variant
PPP1R16B transcript variant X2 XM_047440086.1:c.597+4321…

XM_047440086.1:c.597+4321_597+4330del

N/A Intron Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement (A)20= del(A)10 del(A)9 del(A)8 del(A)6 del(A)5 del(A)4 delAAA delAA delA dupA dupAA dupAAA dup(A)4 dup(A)5 dup(A)6 dup(A)7 dup(A)8
GRCh38.p14 chr 20 NC_000020.11:g.38912504_38912523= NC_000020.11:g.38912514_38912523del NC_000020.11:g.38912515_38912523del NC_000020.11:g.38912516_38912523del NC_000020.11:g.38912518_38912523del NC_000020.11:g.38912519_38912523del NC_000020.11:g.38912520_38912523del NC_000020.11:g.38912521_38912523del NC_000020.11:g.38912522_38912523del NC_000020.11:g.38912523del NC_000020.11:g.38912523dup NC_000020.11:g.38912522_38912523dup NC_000020.11:g.38912521_38912523dup NC_000020.11:g.38912520_38912523dup NC_000020.11:g.38912519_38912523dup NC_000020.11:g.38912518_38912523dup NC_000020.11:g.38912517_38912523dup NC_000020.11:g.38912516_38912523dup
GRCh37.p13 chr 20 NC_000020.10:g.37541147_37541166= NC_000020.10:g.37541157_37541166del NC_000020.10:g.37541158_37541166del NC_000020.10:g.37541159_37541166del NC_000020.10:g.37541161_37541166del NC_000020.10:g.37541162_37541166del NC_000020.10:g.37541163_37541166del NC_000020.10:g.37541164_37541166del NC_000020.10:g.37541165_37541166del NC_000020.10:g.37541166del NC_000020.10:g.37541166dup NC_000020.10:g.37541165_37541166dup NC_000020.10:g.37541164_37541166dup NC_000020.10:g.37541163_37541166dup NC_000020.10:g.37541162_37541166dup NC_000020.10:g.37541161_37541166dup NC_000020.10:g.37541160_37541166dup NC_000020.10:g.37541159_37541166dup
PPP1R16B transcript variant 2 NM_001172735.1:c.1068+4311= NM_001172735.1:c.1068+4321_1068+4330del NM_001172735.1:c.1068+4322_1068+4330del NM_001172735.1:c.1068+4323_1068+4330del NM_001172735.1:c.1068+4325_1068+4330del NM_001172735.1:c.1068+4326_1068+4330del NM_001172735.1:c.1068+4327_1068+4330del NM_001172735.1:c.1068+4328_1068+4330del NM_001172735.1:c.1068+4329_1068+4330del NM_001172735.1:c.1068+4330del NM_001172735.1:c.1068+4330dup NM_001172735.1:c.1068+4329_1068+4330dup NM_001172735.1:c.1068+4328_1068+4330dup NM_001172735.1:c.1068+4327_1068+4330dup NM_001172735.1:c.1068+4326_1068+4330dup NM_001172735.1:c.1068+4325_1068+4330dup NM_001172735.1:c.1068+4324_1068+4330dup NM_001172735.1:c.1068+4323_1068+4330dup
PPP1R16B transcript variant 2 NM_001172735.3:c.1068+4311= NM_001172735.3:c.1068+4321_1068+4330del NM_001172735.3:c.1068+4322_1068+4330del NM_001172735.3:c.1068+4323_1068+4330del NM_001172735.3:c.1068+4325_1068+4330del NM_001172735.3:c.1068+4326_1068+4330del NM_001172735.3:c.1068+4327_1068+4330del NM_001172735.3:c.1068+4328_1068+4330del NM_001172735.3:c.1068+4329_1068+4330del NM_001172735.3:c.1068+4330del NM_001172735.3:c.1068+4330dup NM_001172735.3:c.1068+4329_1068+4330dup NM_001172735.3:c.1068+4328_1068+4330dup NM_001172735.3:c.1068+4327_1068+4330dup NM_001172735.3:c.1068+4326_1068+4330dup NM_001172735.3:c.1068+4325_1068+4330dup NM_001172735.3:c.1068+4324_1068+4330dup NM_001172735.3:c.1068+4323_1068+4330dup
PPP1R16B transcript variant 1 NM_015568.2:c.1194+4311= NM_015568.2:c.1194+4321_1194+4330del NM_015568.2:c.1194+4322_1194+4330del NM_015568.2:c.1194+4323_1194+4330del NM_015568.2:c.1194+4325_1194+4330del NM_015568.2:c.1194+4326_1194+4330del NM_015568.2:c.1194+4327_1194+4330del NM_015568.2:c.1194+4328_1194+4330del NM_015568.2:c.1194+4329_1194+4330del NM_015568.2:c.1194+4330del NM_015568.2:c.1194+4330dup NM_015568.2:c.1194+4329_1194+4330dup NM_015568.2:c.1194+4328_1194+4330dup NM_015568.2:c.1194+4327_1194+4330dup NM_015568.2:c.1194+4326_1194+4330dup NM_015568.2:c.1194+4325_1194+4330dup NM_015568.2:c.1194+4324_1194+4330dup NM_015568.2:c.1194+4323_1194+4330dup
PPP1R16B transcript variant 1 NM_015568.4:c.1194+4311= NM_015568.4:c.1194+4321_1194+4330del NM_015568.4:c.1194+4322_1194+4330del NM_015568.4:c.1194+4323_1194+4330del NM_015568.4:c.1194+4325_1194+4330del NM_015568.4:c.1194+4326_1194+4330del NM_015568.4:c.1194+4327_1194+4330del NM_015568.4:c.1194+4328_1194+4330del NM_015568.4:c.1194+4329_1194+4330del NM_015568.4:c.1194+4330del NM_015568.4:c.1194+4330dup NM_015568.4:c.1194+4329_1194+4330dup NM_015568.4:c.1194+4328_1194+4330dup NM_015568.4:c.1194+4327_1194+4330dup NM_015568.4:c.1194+4326_1194+4330dup NM_015568.4:c.1194+4325_1194+4330dup NM_015568.4:c.1194+4324_1194+4330dup NM_015568.4:c.1194+4323_1194+4330dup
PPP1R16B transcript variant X1 XM_011528768.4:c.1206+4311= XM_011528768.4:c.1206+4321_1206+4330del XM_011528768.4:c.1206+4322_1206+4330del XM_011528768.4:c.1206+4323_1206+4330del XM_011528768.4:c.1206+4325_1206+4330del XM_011528768.4:c.1206+4326_1206+4330del XM_011528768.4:c.1206+4327_1206+4330del XM_011528768.4:c.1206+4328_1206+4330del XM_011528768.4:c.1206+4329_1206+4330del XM_011528768.4:c.1206+4330del XM_011528768.4:c.1206+4330dup XM_011528768.4:c.1206+4329_1206+4330dup XM_011528768.4:c.1206+4328_1206+4330dup XM_011528768.4:c.1206+4327_1206+4330dup XM_011528768.4:c.1206+4326_1206+4330dup XM_011528768.4:c.1206+4325_1206+4330dup XM_011528768.4:c.1206+4324_1206+4330dup XM_011528768.4:c.1206+4323_1206+4330dup
PPP1R16B transcript variant X2 XM_047440086.1:c.597+4311= XM_047440086.1:c.597+4321_597+4330del XM_047440086.1:c.597+4322_597+4330del XM_047440086.1:c.597+4323_597+4330del XM_047440086.1:c.597+4325_597+4330del XM_047440086.1:c.597+4326_597+4330del XM_047440086.1:c.597+4327_597+4330del XM_047440086.1:c.597+4328_597+4330del XM_047440086.1:c.597+4329_597+4330del XM_047440086.1:c.597+4330del XM_047440086.1:c.597+4330dup XM_047440086.1:c.597+4329_597+4330dup XM_047440086.1:c.597+4328_597+4330dup XM_047440086.1:c.597+4327_597+4330dup XM_047440086.1:c.597+4326_597+4330dup XM_047440086.1:c.597+4325_597+4330dup XM_047440086.1:c.597+4324_597+4330dup XM_047440086.1:c.597+4323_597+4330dup
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

37 SubSNP, 23 Frequency submissions
No Submitter Submission ID Date (Build)
1 HGSV ss79755032 Dec 15, 2007 (129)
2 SWEGEN ss3018175813 Nov 08, 2017 (151)
3 PACBIO ss3793538609 Jul 13, 2019 (153)
4 EVA ss3835669196 Apr 27, 2020 (154)
5 GNOMAD ss4353324967 Apr 27, 2021 (155)
6 GNOMAD ss4353324968 Apr 27, 2021 (155)
7 GNOMAD ss4353324969 Apr 27, 2021 (155)
8 GNOMAD ss4353324970 Apr 27, 2021 (155)
9 GNOMAD ss4353324971 Apr 27, 2021 (155)
10 GNOMAD ss4353324972 Apr 27, 2021 (155)
11 GNOMAD ss4353324973 Apr 27, 2021 (155)
12 GNOMAD ss4353324974 Apr 27, 2021 (155)
13 GNOMAD ss4353324976 Apr 27, 2021 (155)
14 GNOMAD ss4353324977 Apr 27, 2021 (155)
15 GNOMAD ss4353324978 Apr 27, 2021 (155)
16 GNOMAD ss4353324979 Apr 27, 2021 (155)
17 GNOMAD ss4353324980 Apr 27, 2021 (155)
18 GNOMAD ss4353324981 Apr 27, 2021 (155)
19 TOPMED ss5088429001 Apr 27, 2021 (155)
20 TOMMO_GENOMICS ss5229628288 Apr 27, 2021 (155)
21 TOMMO_GENOMICS ss5229628289 Apr 27, 2021 (155)
22 TOMMO_GENOMICS ss5229628290 Apr 27, 2021 (155)
23 1000G_HIGH_COVERAGE ss5308781876 Oct 16, 2022 (156)
24 1000G_HIGH_COVERAGE ss5308781877 Oct 16, 2022 (156)
25 1000G_HIGH_COVERAGE ss5308781878 Oct 16, 2022 (156)
26 1000G_HIGH_COVERAGE ss5308781879 Oct 16, 2022 (156)
27 1000G_HIGH_COVERAGE ss5308781880 Oct 16, 2022 (156)
28 HUGCELL_USP ss5501060555 Oct 16, 2022 (156)
29 HUGCELL_USP ss5501060556 Oct 16, 2022 (156)
30 HUGCELL_USP ss5501060557 Oct 16, 2022 (156)
31 HUGCELL_USP ss5501060558 Oct 16, 2022 (156)
32 HUGCELL_USP ss5501060559 Oct 16, 2022 (156)
33 TOMMO_GENOMICS ss5789425154 Oct 16, 2022 (156)
34 TOMMO_GENOMICS ss5789425155 Oct 16, 2022 (156)
35 TOMMO_GENOMICS ss5789425156 Oct 16, 2022 (156)
36 EVA ss5853137930 Oct 16, 2022 (156)
37 EVA ss5923404591 Oct 16, 2022 (156)
38 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
39 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
40 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
41 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
42 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
43 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
44 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
45 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
46 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
47 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
48 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
49 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
50 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
51 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
52 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 551722738 (NC_000020.11:38912503::A 14625/73824)
Row 551722739 (NC_000020.11:38912503::AA 454/73950)
Row 551722740 (NC_000020.11:38912503::AAA 31/73974)...

- Apr 27, 2021 (155)
53 8.3KJPN

Submission ignored due to conflicting rows:
Row 87597595 (NC_000020.10:37541146::A 2902/16686)
Row 87597596 (NC_000020.10:37541146:A: 109/16686)
Row 87597597 (NC_000020.10:37541146::AA 38/16686)

- Apr 27, 2021 (155)
54 8.3KJPN

Submission ignored due to conflicting rows:
Row 87597595 (NC_000020.10:37541146::A 2902/16686)
Row 87597596 (NC_000020.10:37541146:A: 109/16686)
Row 87597597 (NC_000020.10:37541146::AA 38/16686)

- Apr 27, 2021 (155)
55 8.3KJPN

Submission ignored due to conflicting rows:
Row 87597595 (NC_000020.10:37541146::A 2902/16686)
Row 87597596 (NC_000020.10:37541146:A: 109/16686)
Row 87597597 (NC_000020.10:37541146::AA 38/16686)

- Apr 27, 2021 (155)
56 14KJPN

Submission ignored due to conflicting rows:
Row 123262258 (NC_000020.11:38912503::A 4609/27756)
Row 123262259 (NC_000020.11:38912503:A: 188/27756)
Row 123262260 (NC_000020.11:38912503::AA 59/27756)

- Oct 16, 2022 (156)
57 14KJPN

Submission ignored due to conflicting rows:
Row 123262258 (NC_000020.11:38912503::A 4609/27756)
Row 123262259 (NC_000020.11:38912503:A: 188/27756)
Row 123262260 (NC_000020.11:38912503::AA 59/27756)

- Oct 16, 2022 (156)
58 14KJPN

Submission ignored due to conflicting rows:
Row 123262258 (NC_000020.11:38912503::A 4609/27756)
Row 123262259 (NC_000020.11:38912503:A: 188/27756)
Row 123262260 (NC_000020.11:38912503::AA 59/27756)

- Oct 16, 2022 (156)
59 TopMed NC_000020.11 - 38912504 Apr 27, 2021 (155)
60 ALFA NC_000020.11 - 38912504 Apr 27, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA

(self)
ss4353324981 NC_000020.11:38912503:AAAAAAAAA: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA

(self)
363537946, ss5088429001 NC_000020.11:38912503:AAAAAAAA: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA

(self)
ss4353324980 NC_000020.11:38912503:AAAAAA: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA

(self)
ss4353324979 NC_000020.11:38912503:AAAAA: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA

(self)
ss4353324978, ss5501060559 NC_000020.11:38912503:AAAA: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA

(self)
ss4353324977 NC_000020.11:38912503:AAA: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA

(self)
ss4353324976, ss5308781880, ss5501060558 NC_000020.11:38912503:AA: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA

(self)
ss79755032 NC_000020.9:36974579:A: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA

(self)
ss3018175813, ss3793538609, ss5229628289 NC_000020.10:37541146:A: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA

(self)
ss5308781877, ss5501060555, ss5789425155, ss5923404591 NC_000020.11:38912503:A: NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA

(self)
ss3835669196, ss5229628288 NC_000020.10:37541146::A NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324967, ss5308781876, ss5501060556, ss5789425154, ss5853137930 NC_000020.11:38912503::A NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA

(self)
ss5229628290 NC_000020.10:37541146::AA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324968, ss5308781878, ss5501060557, ss5789425156 NC_000020.11:38912503::AA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324969, ss5308781879 NC_000020.11:38912503::AAA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324970 NC_000020.11:38912503::AAAA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324971 NC_000020.11:38912503::AAAAA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA

(self)
4187447835 NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA

NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324972 NC_000020.11:38912503::AAAAAA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324973 NC_000020.11:38912503::AAAAAAA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA

(self)
ss4353324974 NC_000020.11:38912503::AAAAAAAA NC_000020.11:38912503:AAAAAAAAAAAA…

NC_000020.11:38912503:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA

(self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs58456397

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d