Name: rs5859643
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5859643

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr4:78652160-78652174 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delAAA / delAA / delA / dupA / dup…
delAAA / delAA / delA / dupA / dupAA / dupAAA / dup(A)₆ / dup(A)₁₂
Variation Type: Indel Insertion and Deletion
Frequency: (A)₁₅=0.1032 (517/5008, 1000G)
(A)₁₅=0.1373 (591/4306, ALFA)
(A)₁₅=0.0000 (0/3854, ALSPAC) (+ 1 more)
(A)₁₅=0.0000 (0/3708, TWINSUK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: LINC01094 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	4306	AAAAAAAAAAAAAAA=0.1373	AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAA=0.0214, AAAAAAAAAAAAAA=0.8414, AAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000	0.004367	0.721494	0.274139	19
European	Sub	4298	AAAAAAAAAAAAAAA=0.1370	AAAAAAAAAAAA=0.0000, AAAAAAAAAAAAA=0.0214, AAAAAAAAAAAAAA=0.8416, AAAAAAAAAAAAAAAA=0.0000, AAAAAAAAAAAAAAAAA=0.0000	0.004375	0.721925	0.2737	18
African	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
African Others	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
African American	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Asian	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
East Asian	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Other Asian	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Latin American 1	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Latin American 2	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
South Asian	Sub	0	AAAAAAAAAAAAAAA=0	AAAAAAAAAAAA=0, AAAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Other	Sub	8	AAAAAAAAAAAAAAA=0.2	AAAAAAAAAAAA=0.0, AAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.8, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAA=0.0	0.0	0.5	0.5	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
1000Genomes	Global	Study-wide	5008	(A)₁₅=0.1032	delA=0.8968
1000Genomes	African	Sub	1322	(A)₁₅=0.1967	delA=0.8033
1000Genomes	East Asian	Sub	1008	(A)₁₅=0.0863	delA=0.9137
1000Genomes	Europe	Sub	1006	(A)₁₅=0.0467	delA=0.9533
1000Genomes	South Asian	Sub	978	(A)₁₅=0.081	delA=0.919
1000Genomes	American	Sub	694	(A)₁₅=0.063	delA=0.937
Allele Frequency Aggregator	Total	Global	4306	(A)₁₅=0.1373	delAAA=0.0000, delAA=0.0214, delA=0.8414, dupA=0.0000, dupAA=0.0000
Allele Frequency Aggregator	European	Sub	4298	(A)₁₅=0.1370	delAAA=0.0000, delAA=0.0214, delA=0.8416, dupA=0.0000, dupAA=0.0000
Allele Frequency Aggregator	Other	Sub	8	(A)₁₅=0.2	delAAA=0.0, delAA=0.0, delA=0.8, dupA=0.0, dupAA=0.0
Allele Frequency Aggregator	Latin American 1	Sub	0	(A)₁₅=0	delAAA=0, delAA=0, delA=0, dupA=0, dupAA=0
Allele Frequency Aggregator	Latin American 2	Sub	0	(A)₁₅=0	delAAA=0, delAA=0, delA=0, dupA=0, dupAA=0
Allele Frequency Aggregator	South Asian	Sub	0	(A)₁₅=0	delAAA=0, delAA=0, delA=0, dupA=0, dupAA=0
Allele Frequency Aggregator	African	Sub	0	(A)₁₅=0	delAAA=0, delAA=0, delA=0, dupA=0, dupAA=0
Allele Frequency Aggregator	Asian	Sub	0	(A)₁₅=0	delAAA=0, delAA=0, delA=0, dupA=0, dupAA=0
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	(A)₁₅=0.0000	delA=1.0000
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	(A)₁₅=0.0000	delA=1.0000

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 4	NC_000004.12:g.78652172_78652174del
GRCh38.p14 chr 4	NC_000004.12:g.78652173_78652174del
GRCh38.p14 chr 4	NC_000004.12:g.78652174del
GRCh38.p14 chr 4	NC_000004.12:g.78652174dup
GRCh38.p14 chr 4	NC_000004.12:g.78652173_78652174dup
GRCh38.p14 chr 4	NC_000004.12:g.78652172_78652174dup
GRCh38.p14 chr 4	NC_000004.12:g.78652169_78652174dup
GRCh38.p14 chr 4	NC_000004.12:g.78652163_78652174dup
GRCh37.p13 chr 4	NC_000004.11:g.79573326_79573328del
GRCh37.p13 chr 4	NC_000004.11:g.79573327_79573328del
GRCh37.p13 chr 4	NC_000004.11:g.79573328del
GRCh37.p13 chr 4	NC_000004.11:g.79573328dup
GRCh37.p13 chr 4	NC_000004.11:g.79573327_79573328dup
GRCh37.p13 chr 4	NC_000004.11:g.79573326_79573328dup
GRCh37.p13 chr 4	NC_000004.11:g.79573323_79573328dup
GRCh37.p13 chr 4	NC_000004.11:g.79573317_79573328dup

Gene: LINC01094, long intergenic non-protein coding RNA 1094 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LINC01094 transcript variant 1	NR_038303.1:n.	N/A	Intron Variant
LINC01094 transcript variant 2	NR_038304.1:n.	N/A	Intron Variant
LINC01094 transcript variant 3	NR_038305.1:n.	N/A	Intron Variant
LINC01094 transcript variant 4	NR_038306.1:n.	N/A	Intron Variant
LINC01094 transcript variant 5	NR_038307.1:n.	N/A	Intron Variant
LINC01094 transcript variant 6	NR_038308.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₅=	delAAA	delAA	delA	dupA	dupAA	dupAAA	dup(A)₆	dup(A)₁₂
GRCh38.p14 chr 4	NC_000004.12:g.78652160_78652174=	NC_000004.12:g.78652172_78652174del	NC_000004.12:g.78652173_78652174del	NC_000004.12:g.78652174del	NC_000004.12:g.78652174dup	NC_000004.12:g.78652173_78652174dup	NC_000004.12:g.78652172_78652174dup	NC_000004.12:g.78652169_78652174dup	NC_000004.12:g.78652163_78652174dup
GRCh37.p13 chr 4	NC_000004.11:g.79573314_79573328=	NC_000004.11:g.79573326_79573328del	NC_000004.11:g.79573327_79573328del	NC_000004.11:g.79573328del	NC_000004.11:g.79573328dup	NC_000004.11:g.79573327_79573328dup	NC_000004.11:g.79573326_79573328dup	NC_000004.11:g.79573323_79573328dup	NC_000004.11:g.79573317_79573328dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

54 SubSNP, 17 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	DEVINE_LAB	ss8126007	Mar 15, 2016 (147)
2	DEVINE_LAB	ss8126009	Mar 15, 2016 (147)
3	HUMANGENOME_JCVI	ss95359953	Dec 05, 2013 (138)
4	BUSHMAN	ss193745537	Jul 04, 2010 (137)
5	GMI	ss287750993	May 09, 2011 (137)
6	GMI	ss288545615	May 04, 2012 (137)
7	PJP	ss295173503	May 09, 2011 (137)
8	PJP	ss295173504	May 09, 2011 (137)
9	SSMP	ss663531280	Apr 01, 2015 (144)
10	BILGI_BIOE	ss666265334	Apr 25, 2013 (138)
11	SSIP	ss947119266	Aug 21, 2014 (142)
12	1000GENOMES	ss1372358624	Aug 21, 2014 (142)
13	DDI	ss1536414205	Apr 01, 2015 (144)
14	EVA_UK10K_ALSPAC	ss1704223035	Apr 01, 2015 (144)
15	EVA_UK10K_TWINSUK	ss1704223228	Apr 01, 2015 (144)
16	HAMMER_LAB	ss1801712492	Sep 08, 2015 (146)
17	SYSTEMSBIOZJU	ss2625678804	Nov 08, 2017 (151)
18	SWEGEN	ss2994976772	Nov 08, 2017 (151)
19	BIOINF_KMB_FNS_UNIBA	ss3645805934	Oct 12, 2018 (152)
20	URBANLAB	ss3647771548	Oct 12, 2018 (152)
21	EVA_DECODE	ss3712378288	Jul 13, 2019 (153)
22	EVA_DECODE	ss3712378289	Jul 13, 2019 (153)
23	EVA_DECODE	ss3712378290	Jul 13, 2019 (153)
24	EVA_DECODE	ss3712378291	Jul 13, 2019 (153)
25	EVA_DECODE	ss3712378292	Jul 13, 2019 (153)
26	ACPOP	ss3731298537	Jul 13, 2019 (153)
27	ACPOP	ss3731298538	Jul 13, 2019 (153)
28	PACBIO	ss3784764674	Jul 13, 2019 (153)
29	PACBIO	ss3784764675	Jul 13, 2019 (153)
30	PACBIO	ss3790215603	Jul 13, 2019 (153)
31	PACBIO	ss3795090956	Jul 13, 2019 (153)
32	KHV_HUMAN_GENOMES	ss3805143863	Jul 13, 2019 (153)
33	EVA	ss3843194480	Apr 26, 2020 (154)
34	GNOMAD	ss4114214895	Apr 26, 2021 (155)
35	GNOMAD	ss4114214896	Apr 26, 2021 (155)
36	GNOMAD	ss4114214897	Apr 26, 2021 (155)
37	GNOMAD	ss4114214898	Apr 26, 2021 (155)
38	GNOMAD	ss4114214899	Apr 26, 2021 (155)
39	GNOMAD	ss4114214900	Apr 26, 2021 (155)
40	TOMMO_GENOMICS	ss5166455078	Apr 26, 2021 (155)
41	TOMMO_GENOMICS	ss5166455079	Apr 26, 2021 (155)
42	1000G_HIGH_COVERAGE	ss5259790394	Oct 13, 2022 (156)
43	1000G_HIGH_COVERAGE	ss5259790395	Oct 13, 2022 (156)
44	1000G_HIGH_COVERAGE	ss5259790396	Oct 13, 2022 (156)
45	HUGCELL_USP	ss5458485194	Oct 13, 2022 (156)
46	HUGCELL_USP	ss5458485195	Oct 13, 2022 (156)
47	HUGCELL_USP	ss5458485196	Oct 13, 2022 (156)
48	TOMMO_GENOMICS	ss5701007488	Oct 13, 2022 (156)
49	TOMMO_GENOMICS	ss5701007489	Oct 13, 2022 (156)
50	TOMMO_GENOMICS	ss5701007490	Oct 13, 2022 (156)
51	YY_MCH	ss5805234186	Oct 13, 2022 (156)
52	EVA	ss5844225648	Oct 13, 2022 (156)
53	EVA	ss5864111237	Oct 13, 2022 (156)
54	EVA	ss5980233516	Oct 13, 2022 (156)
55	1000Genomes	NC_000004.11 - 79573314	Oct 12, 2018 (152)
56	The Avon Longitudinal Study of Parents and Children	NC_000004.11 - 79573314	Oct 12, 2018 (152)
57	gnomAD - Genomes Submission ignored due to conflicting rows: Row 154644114 (NC_000004.12:78652159::A 4793/129884) Row 154644115 (NC_000004.12:78652159::AA 12/129912) Row 154644116 (NC_000004.12:78652159::AAAAAA 1/129916)...	-	Apr 26, 2021 (155)
58	gnomAD - Genomes Submission ignored due to conflicting rows: Row 154644114 (NC_000004.12:78652159::A 4793/129884) Row 154644115 (NC_000004.12:78652159::AA 12/129912) Row 154644116 (NC_000004.12:78652159::AAAAAA 1/129916)...	-	Apr 26, 2021 (155)
59	gnomAD - Genomes Submission ignored due to conflicting rows: Row 154644114 (NC_000004.12:78652159::A 4793/129884) Row 154644115 (NC_000004.12:78652159::AA 12/129912) Row 154644116 (NC_000004.12:78652159::AAAAAA 1/129916)...	-	Apr 26, 2021 (155)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 154644114 (NC_000004.12:78652159::A 4793/129884) Row 154644115 (NC_000004.12:78652159::AA 12/129912) Row 154644116 (NC_000004.12:78652159::AAAAAA 1/129916)...	-	Apr 26, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 154644114 (NC_000004.12:78652159::A 4793/129884) Row 154644115 (NC_000004.12:78652159::AA 12/129912) Row 154644116 (NC_000004.12:78652159::AAAAAA 1/129916)...	-	Apr 26, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 154644114 (NC_000004.12:78652159::A 4793/129884) Row 154644115 (NC_000004.12:78652159::AA 12/129912) Row 154644116 (NC_000004.12:78652159::AAAAAA 1/129916)...	-	Apr 26, 2021 (155)
63	Northern Sweden Submission ignored due to conflicting rows: Row 4583402 (NC_000004.11:79573313:A: 538/590) Row 4583403 (NC_000004.11:79573313:AA: 9/590)	-	Jul 13, 2019 (153)
64	Northern Sweden Submission ignored due to conflicting rows: Row 4583402 (NC_000004.11:79573313:A: 538/590) Row 4583403 (NC_000004.11:79573313:AA: 9/590)	-	Jul 13, 2019 (153)
65	8.3KJPN Submission ignored due to conflicting rows: Row 24424385 (NC_000004.11:79573313:A: 15388/16760) Row 24424386 (NC_000004.11:79573313:AA: 39/16760)	-	Apr 26, 2021 (155)
66	8.3KJPN Submission ignored due to conflicting rows: Row 24424385 (NC_000004.11:79573313:A: 15388/16760) Row 24424386 (NC_000004.11:79573313:AA: 39/16760)	-	Apr 26, 2021 (155)
67	14KJPN Submission ignored due to conflicting rows: Row 34844592 (NC_000004.12:78652159:A: 25931/28258) Row 34844593 (NC_000004.12:78652159:AA: 80/28258) Row 34844594 (NC_000004.12:78652159::A 1/28258)	-	Oct 13, 2022 (156)
68	14KJPN Submission ignored due to conflicting rows: Row 34844592 (NC_000004.12:78652159:A: 25931/28258) Row 34844593 (NC_000004.12:78652159:AA: 80/28258) Row 34844594 (NC_000004.12:78652159::A 1/28258)	-	Oct 13, 2022 (156)
69	14KJPN Submission ignored due to conflicting rows: Row 34844592 (NC_000004.12:78652159:A: 25931/28258) Row 34844593 (NC_000004.12:78652159:AA: 80/28258) Row 34844594 (NC_000004.12:78652159::A 1/28258)	-	Oct 13, 2022 (156)
70	UK 10K study - Twins	NC_000004.11 - 79573314	Oct 12, 2018 (152)
71	ALFA	NC_000004.12 - 78652160	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs869247517	Jul 19, 2016 (147)
rs5859644	May 11, 2012 (137)
rs5859645	May 11, 2012 (137)
rs5859646	May 11, 2012 (137)
rs33913630	May 23, 2006 (127)
rs33985883	May 23, 2006 (127)
rs33993814	May 23, 2006 (127)
rs67548551	May 11, 2012 (137)
rs67548552	Feb 27, 2009 (130)
rs368512310	May 13, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss3712378292, ss4114214900	NC_000004.12:78652159:AAA:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
13655224515	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss1536414205, ss2994976772, ss3731298538, ss3784764675, ss5166455079	NC_000004.11:79573313:AA:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss4114214899, ss5259790396, ss5458485194, ss5701007489	NC_000004.12:78652159:AA:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
13655224515	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss3712378291	NC_000004.12:78652160:AA:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA	(self)
ss288545615, ss295173503	NC_000004.10:79792337:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss295173504	NC_000004.10:79792351:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
21832909, 12139342, 12139342, ss663531280, ss666265334, ss1372358624, ss1704223035, ss1704223228, ss1801712492, ss2625678804, ss3731298537, ss3784764674, ss3790215603, ss3795090956, ss5166455078, ss5844225648, ss5980233516	NC_000004.11:79573313:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss947119266	NC_000004.11:79573314:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3645805934, ss3647771548, ss3805143863, ss3843194480, ss4114214898, ss5259790394, ss5458485195, ss5701007488, ss5805234186, ss5864111237	NC_000004.12:78652159:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
13655224515	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3712378290	NC_000004.12:78652161:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss287750993	NT_016354.19:4121034:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss8126007	NT_016354.19:4121039:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss8126009, ss95359953	NT_016354.19:4121048:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss193745537	NT_016354.20:19730778:A:	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss4114214895, ss5259790395, ss5458485196, ss5701007490	NC_000004.12:78652159::A	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
13655224515	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss4114214896	NC_000004.12:78652159::AA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
13655224515	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA	(self)
ss3712378289	NC_000004.12:78652162::AAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss4114214897	NC_000004.12:78652159::AAAAAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA	(self)
ss3712378288	NC_000004.12:78652162::AAAAAAAAAAAA	NC_000004.12:78652159:AAAAAAAAAAAA… NC_000004.12:78652159:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs5859643

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs5859643