Name: rs5874297
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5874297

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr6:10952585-10952597 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delAA / delA / dupA / dupAA / dupA…
delAA / delA / dupA / dupAA / dupAAA / dup(A)₅
Variation Type: Indel Insertion and Deletion
Frequency: (A)₁₃=0.1955 (979/5008, 1000G)
(A)₁₃=0.0065 (25/3854, ALSPAC)
(A)₁₃=0.0100 (37/3708, TWINSUK) (+ 7 more)
delAA=0.00 (0/86, ALFA)
delA=0.00 (0/86, ALFA)
dupA=0.00 (0/86, ALFA)
dupAA=0.00 (0/86, ALFA)
dupAAA=0.00 (0/86, ALFA)
dup(A)₅=0.00 (0/86, ALFA)
(A)₁₃=0.12 (5/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: SYCP2L : Intron Variant
LOC101928191 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	86	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
European	Sub	6	AAAAAAAAAAAAA=1.0	AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
African	Sub	72	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
African Others	Sub	2	AAAAAAAAAAAAA=1.0	AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
African American	Sub	70	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAA=0.00, AAAAAAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Asian	Sub	0	AAAAAAAAAAAAA=0	AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAA=0	0	0	0	N/A
East Asian	Sub	0	AAAAAAAAAAAAA=0	AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Other Asian	Sub	0	AAAAAAAAAAAAA=0	AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Latin American 1	Sub	0	AAAAAAAAAAAAA=0	AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Latin American 2	Sub	0	AAAAAAAAAAAAA=0	AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAA=0	0	0	0	N/A
South Asian	Sub	0	AAAAAAAAAAAAA=0	AAAAAAAAAAA=0, AAAAAAAAAAAA=0, AAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAA=0, AAAAAAAAAAAAAAAAAA=0	0	0	0	N/A
Other	Sub	8	AAAAAAAAAAAAA=1.0	AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAA=0.0, AAAAAAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
1000Genomes	Global	Study-wide	5008	- No frequency provided	dupA=0.8045
1000Genomes	African	Sub	1322	- No frequency provided	dupA=0.6679
1000Genomes	East Asian	Sub	1008	- No frequency provided	dupA=0.8601
1000Genomes	Europe	Sub	1006	- No frequency provided	dupA=0.8588
1000Genomes	South Asian	Sub	978	- No frequency provided	dupA=0.857
1000Genomes	American	Sub	694	- No frequency provided	dupA=0.831
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	- No frequency provided	dupA=0.9935
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	- No frequency provided	dupA=0.9900
Allele Frequency Aggregator	Total	Global	86	(A)₁₃=1.00	delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00, dup(A)₅=0.00
Allele Frequency Aggregator	African	Sub	72	(A)₁₃=1.00	delAA=0.00, delA=0.00, dupA=0.00, dupAA=0.00, dupAAA=0.00, dup(A)₅=0.00
Allele Frequency Aggregator	Other	Sub	8	(A)₁₃=1.0	delAA=0.0, delA=0.0, dupA=0.0, dupAA=0.0, dupAAA=0.0, dup(A)₅=0.0
Allele Frequency Aggregator	European	Sub	6	(A)₁₃=1.0	delAA=0.0, delA=0.0, dupA=0.0, dupAA=0.0, dupAAA=0.0, dup(A)₅=0.0
Allele Frequency Aggregator	Latin American 1	Sub	0	(A)₁₃=0	delAA=0, delA=0, dupA=0, dupAA=0, dupAAA=0, dup(A)₅=0
Allele Frequency Aggregator	Latin American 2	Sub	0	(A)₁₃=0	delAA=0, delA=0, dupA=0, dupAA=0, dupAAA=0, dup(A)₅=0
Allele Frequency Aggregator	South Asian	Sub	0	(A)₁₃=0	delAA=0, delA=0, dupA=0, dupAA=0, dupAAA=0, dup(A)₅=0
Allele Frequency Aggregator	Asian	Sub	0	(A)₁₃=0	delAA=0, delA=0, dupA=0, dupAA=0, dupAAA=0, dup(A)₅=0
The Danish reference pan genome	Danish	Study-wide	40	- No frequency provided	dupA=0.88

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 6	NC_000006.12:g.10952596_10952597del
GRCh38.p14 chr 6	NC_000006.12:g.10952597del
GRCh38.p14 chr 6	NC_000006.12:g.10952597dup
GRCh38.p14 chr 6	NC_000006.12:g.10952596_10952597dup
GRCh38.p14 chr 6	NC_000006.12:g.10952595_10952597dup
GRCh38.p14 chr 6	NC_000006.12:g.10952593_10952597dup
GRCh37.p13 chr 6	NC_000006.11:g.10952829_10952830del
GRCh37.p13 chr 6	NC_000006.11:g.10952830del
GRCh37.p13 chr 6	NC_000006.11:g.10952830dup
GRCh37.p13 chr 6	NC_000006.11:g.10952829_10952830dup
GRCh37.p13 chr 6	NC_000006.11:g.10952828_10952830dup
GRCh37.p13 chr 6	NC_000006.11:g.10952826_10952830dup

Gene: SYCP2L, synaptonemal complex protein 2 like (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
SYCP2L transcript	NM_001040274.3:c.1955-252… NM_001040274.3:c.1955-2520_1955-2519del	N/A	Intron Variant

Gene: LOC101928191, uncharacterized LOC101928191 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC101928191 transcript	NR_125851.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₃=	delAA	delA	dupA	dupAA	dupAAA	dup(A)₅
GRCh38.p14 chr 6	NC_000006.12:g.10952585_10952597=	NC_000006.12:g.10952596_10952597del	NC_000006.12:g.10952597del	NC_000006.12:g.10952597dup	NC_000006.12:g.10952596_10952597dup	NC_000006.12:g.10952595_10952597dup	NC_000006.12:g.10952593_10952597dup
GRCh37.p13 chr 6	NC_000006.11:g.10952818_10952830=	NC_000006.11:g.10952829_10952830del	NC_000006.11:g.10952830del	NC_000006.11:g.10952830dup	NC_000006.11:g.10952829_10952830dup	NC_000006.11:g.10952828_10952830dup	NC_000006.11:g.10952826_10952830dup
SYCP2L transcript	NM_001040274.2:c.1955-2531=	NM_001040274.2:c.1955-2520_1955-2519del	NM_001040274.2:c.1955-2519del	NM_001040274.2:c.1955-2519dup	NM_001040274.2:c.1955-2520_1955-2519dup	NM_001040274.2:c.1955-2521_1955-2519dup	NM_001040274.2:c.1955-2523_1955-2519dup
SYCP2L transcript	NM_001040274.3:c.1955-2531=	NM_001040274.3:c.1955-2520_1955-2519del	NM_001040274.3:c.1955-2519del	NM_001040274.3:c.1955-2519dup	NM_001040274.3:c.1955-2520_1955-2519dup	NM_001040274.3:c.1955-2521_1955-2519dup	NM_001040274.3:c.1955-2523_1955-2519dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

47 SubSNP, 16 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss82348265	Dec 03, 2013 (138)
2	HUMANGENOME_JCVI	ss95419346	Feb 03, 2009 (130)
3	BUSHMAN	ss193845552	Jul 04, 2010 (138)
4	GMI	ss287787767	Dec 06, 2013 (138)
5	GMI	ss288683560	May 04, 2012 (137)
6	PJP	ss295264575	May 09, 2011 (137)
7	SSMP	ss663640418	Apr 01, 2015 (144)
8	BILGI_BIOE	ss666342855	Apr 25, 2013 (138)
9	1000GENOMES	ss1375125273	Aug 21, 2014 (142)
10	EVA_GENOME_DK	ss1576682512	Apr 01, 2015 (144)
11	EVA_UK10K_ALSPAC	ss1705039347	Apr 01, 2015 (144)
12	EVA_UK10K_TWINSUK	ss1705039473	Apr 01, 2015 (144)
13	HAMMER_LAB	ss1804279798	Sep 08, 2015 (146)
14	SYSTEMSBIOZJU	ss2626256433	Nov 08, 2017 (151)
15	SWEGEN	ss2998513654	Nov 08, 2017 (151)
16	SWEGEN	ss2998513655	Nov 08, 2017 (151)
17	MCHAISSO	ss3066064680	Nov 08, 2017 (151)
18	BIOINF_KMB_FNS_UNIBA	ss3645932578	Oct 12, 2018 (152)
19	EVA_DECODE	ss3716581143	Jul 13, 2019 (153)
20	EVA_DECODE	ss3716581144	Jul 13, 2019 (153)
21	EVA_DECODE	ss3716581145	Jul 13, 2019 (153)
22	PACBIO	ss3785372947	Jul 13, 2019 (153)
23	PACBIO	ss3790738662	Jul 13, 2019 (153)
24	PACBIO	ss3795615912	Jul 13, 2019 (153)
25	KHV_HUMAN_GENOMES	ss3807773694	Jul 13, 2019 (153)
26	EVA	ss3829732413	Apr 26, 2020 (154)
27	GNOMAD	ss4136874915	Apr 26, 2021 (155)
28	GNOMAD	ss4136874916	Apr 26, 2021 (155)
29	GNOMAD	ss4136874917	Apr 26, 2021 (155)
30	GNOMAD	ss4136874918	Apr 26, 2021 (155)
31	GNOMAD	ss4136874919	Apr 26, 2021 (155)
32	TOMMO_GENOMICS	ss5176150502	Apr 26, 2021 (155)
33	TOMMO_GENOMICS	ss5176150503	Apr 26, 2021 (155)
34	TOMMO_GENOMICS	ss5176150504	Apr 26, 2021 (155)
35	1000G_HIGH_COVERAGE	ss5267395711	Oct 13, 2022 (156)
36	1000G_HIGH_COVERAGE	ss5267395712	Oct 13, 2022 (156)
37	HUGCELL_USP	ss5465186646	Oct 13, 2022 (156)
38	HUGCELL_USP	ss5465186647	Oct 13, 2022 (156)
39	TOMMO_GENOMICS	ss5713813190	Oct 13, 2022 (156)
40	TOMMO_GENOMICS	ss5713813191	Oct 13, 2022 (156)
41	TOMMO_GENOMICS	ss5713813192	Oct 13, 2022 (156)
42	YY_MCH	ss5807150687	Oct 13, 2022 (156)
43	EVA	ss5841791748	Oct 13, 2022 (156)
44	EVA	ss5841791749	Oct 13, 2022 (156)
45	EVA	ss5855203124	Oct 13, 2022 (156)
46	EVA	ss5882647343	Oct 13, 2022 (156)
47	EVA	ss5968262675	Oct 13, 2022 (156)
48	1000Genomes	NC_000006.11 - 10952818	Oct 12, 2018 (152)
49	The Avon Longitudinal Study of Parents and Children	NC_000006.11 - 10952818	Oct 12, 2018 (152)
50	The Danish reference pan genome	NC_000006.11 - 10952818	Apr 26, 2020 (154)
51	gnomAD - Genomes Submission ignored due to conflicting rows: Row 217036718 (NC_000006.12:10952584::A 116252/132692) Row 217036719 (NC_000006.12:10952584::AA 6555/132448) Row 217036720 (NC_000006.12:10952584::AAA 4/132702)...	-	Apr 26, 2021 (155)
52	gnomAD - Genomes Submission ignored due to conflicting rows: Row 217036718 (NC_000006.12:10952584::A 116252/132692) Row 217036719 (NC_000006.12:10952584::AA 6555/132448) Row 217036720 (NC_000006.12:10952584::AAA 4/132702)...	-	Apr 26, 2021 (155)
53	gnomAD - Genomes Submission ignored due to conflicting rows: Row 217036718 (NC_000006.12:10952584::A 116252/132692) Row 217036719 (NC_000006.12:10952584::AA 6555/132448) Row 217036720 (NC_000006.12:10952584::AAA 4/132702)...	-	Apr 26, 2021 (155)
54	gnomAD - Genomes Submission ignored due to conflicting rows: Row 217036718 (NC_000006.12:10952584::A 116252/132692) Row 217036719 (NC_000006.12:10952584::AA 6555/132448) Row 217036720 (NC_000006.12:10952584::AAA 4/132702)...	-	Apr 26, 2021 (155)
55	gnomAD - Genomes Submission ignored due to conflicting rows: Row 217036718 (NC_000006.12:10952584::A 116252/132692) Row 217036719 (NC_000006.12:10952584::AA 6555/132448) Row 217036720 (NC_000006.12:10952584::AAA 4/132702)...	-	Apr 26, 2021 (155)
56	8.3KJPN Submission ignored due to conflicting rows: Row 34119809 (NC_000006.11:10952817::A 16636/16760) Row 34119810 (NC_000006.11:10952817::AA 36/16760) Row 34119811 (NC_000006.11:10952817:AA: 5/16760)	-	Apr 26, 2021 (155)
57	8.3KJPN Submission ignored due to conflicting rows: Row 34119809 (NC_000006.11:10952817::A 16636/16760) Row 34119810 (NC_000006.11:10952817::AA 36/16760) Row 34119811 (NC_000006.11:10952817:AA: 5/16760)	-	Apr 26, 2021 (155)
58	8.3KJPN Submission ignored due to conflicting rows: Row 34119809 (NC_000006.11:10952817::A 16636/16760) Row 34119810 (NC_000006.11:10952817::AA 36/16760) Row 34119811 (NC_000006.11:10952817:AA: 5/16760)	-	Apr 26, 2021 (155)
59	14KJPN Submission ignored due to conflicting rows: Row 47650294 (NC_000006.12:10952584::A 28066/28258) Row 47650295 (NC_000006.12:10952584::AA 71/28258) Row 47650296 (NC_000006.12:10952584:AA: 12/28258)	-	Oct 13, 2022 (156)
60	14KJPN Submission ignored due to conflicting rows: Row 47650294 (NC_000006.12:10952584::A 28066/28258) Row 47650295 (NC_000006.12:10952584::AA 71/28258) Row 47650296 (NC_000006.12:10952584:AA: 12/28258)	-	Oct 13, 2022 (156)
61	14KJPN Submission ignored due to conflicting rows: Row 47650294 (NC_000006.12:10952584::A 28066/28258) Row 47650295 (NC_000006.12:10952584::AA 71/28258) Row 47650296 (NC_000006.12:10952584:AA: 12/28258)	-	Oct 13, 2022 (156)
62	UK 10K study - Twins	NC_000006.11 - 10952818	Oct 12, 2018 (152)
63	ALFA	NC_000006.12 - 10952585	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs33996525	May 11, 2012 (137)
rs61419478	May 23, 2008 (130)
rs111713134	May 15, 2013 (138)
rs139835581	May 11, 2012 (137)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss5176150504	NC_000006.11:10952817:AA:	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss5713813192	NC_000006.12:10952584:AA:	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
1834433862	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss3716581145, ss4136874919	NC_000006.12:10952584:A:	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
1834433862	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss295264575	NC_000006.10:11060810::A	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss288683560	NC_000006.10:11060816::A	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
30706875, 17097989, 1054169, 17097989, ss663640418, ss666342855, ss1375125273, ss1576682512, ss1705039347, ss1705039473, ss1804279798, ss2626256433, ss2998513654, ss3785372947, ss3790738662, ss3795615912, ss3829732413, ss5176150502, ss5841791748, ss5968262675	NC_000006.11:10952817::A	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3645932578, ss3807773694, ss4136874915, ss5267395711, ss5465186646, ss5713813190, ss5807150687, ss5855203124, ss5882647343	NC_000006.12:10952584::A	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
1834433862	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3716581144	NC_000006.12:10952585::A	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss82348265, ss95419346, ss287787767	NT_007592.15:10892830::A	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss193845552	NT_007592.16:10892584::A	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss2998513655, ss5176150503, ss5841791749	NC_000006.11:10952817::AA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss3066064680, ss4136874916, ss5267395712, ss5465186647, ss5713813191	NC_000006.12:10952584::AA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
1834433862	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss3716581143	NC_000006.12:10952585::AA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA	(self)
ss4136874917	NC_000006.12:10952584::AAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
1834433862	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA	(self)
ss4136874918	NC_000006.12:10952584::AAAAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
1834433862	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	NC_000006.12:10952584:AAAAAAAAAAAA… NC_000006.12:10952584:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs5874297

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs5874297