Name: rs59789660
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs59789660

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr19:49314096-49314108 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delAA / delA / dupA / dup(A)₅
Variation Type: Indel Insertion and Deletion
Frequency: delAA=0.019785 (5237/264690, TOPMED)
delA=0.01018 (106/10410, ALFA)
delA=0.3820 (1913/5008, 1000G) (+ 1 more)
delA=0.017 (10/600, NorthernSweden)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: SLC6A16 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	10410	AAAAAAAAAAAAA=0.98934	AAAAAAAAAAA=0.00000, AAAAAAAAAAAA=0.01018, AAAAAAAAAAAAAA=0.00048	0.980192	0.000577	0.019231	7
European	Sub	9364	AAAAAAAAAAAAA=0.9881	AAAAAAAAAAA=0.0000, AAAAAAAAAAAA=0.0113, AAAAAAAAAAAAAA=0.0005	0.977977	0.000641	0.021381	6
African	Sub	604	AAAAAAAAAAAAA=1.000	AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
African Others	Sub	22	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
African American	Sub	582	AAAAAAAAAAAAA=1.000	AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
Asian	Sub	34	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	26	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	8	AAAAAAAAAAAAA=1.0	AAAAAAAAAAA=0.0, AAAAAAAAAAAA=0.0, AAAAAAAAAAAAAA=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	58	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	146	AAAAAAAAAAAAA=1.000	AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	28	AAAAAAAAAAAAA=1.00	AAAAAAAAAAA=0.00, AAAAAAAAAAAA=0.00, AAAAAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Other	Sub	176	AAAAAAAAAAAAA=1.000	AAAAAAAAAAA=0.000, AAAAAAAAAAAA=0.000, AAAAAAAAAAAAAA=0.000	1.0	0.0	0.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	(A)₁₃=0.980215	delAA=0.019785
Allele Frequency Aggregator	Total	Global	10410	(A)₁₃=0.98934	delAA=0.00000, delA=0.01018, dupA=0.00048
Allele Frequency Aggregator	European	Sub	9364	(A)₁₃=0.9881	delAA=0.0000, delA=0.0113, dupA=0.0005
Allele Frequency Aggregator	African	Sub	604	(A)₁₃=1.000	delAA=0.000, delA=0.000, dupA=0.000
Allele Frequency Aggregator	Other	Sub	176	(A)₁₃=1.000	delAA=0.000, delA=0.000, dupA=0.000
Allele Frequency Aggregator	Latin American 2	Sub	146	(A)₁₃=1.000	delAA=0.000, delA=0.000, dupA=0.000
Allele Frequency Aggregator	Latin American 1	Sub	58	(A)₁₃=1.00	delAA=0.00, delA=0.00, dupA=0.00
Allele Frequency Aggregator	Asian	Sub	34	(A)₁₃=1.00	delAA=0.00, delA=0.00, dupA=0.00
Allele Frequency Aggregator	South Asian	Sub	28	(A)₁₃=1.00	delAA=0.00, delA=0.00, dupA=0.00
1000Genomes	Global	Study-wide	5008	(A)₁₃=0.6180	delA=0.3820
1000Genomes	African	Sub	1322	(A)₁₃=0.5847	delA=0.4153
1000Genomes	East Asian	Sub	1008	(A)₁₃=0.6111	delA=0.3889
1000Genomes	Europe	Sub	1006	(A)₁₃=0.6571	delA=0.3429
1000Genomes	South Asian	Sub	978	(A)₁₃=0.626	delA=0.374
1000Genomes	American	Sub	694	(A)₁₃=0.624	delA=0.376
Northern Sweden	ACPOP	Study-wide	600	(A)₁₃=0.983	delA=0.017

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 19	NC_000019.10:g.49314107_49314108del
GRCh38.p14 chr 19	NC_000019.10:g.49314108del
GRCh38.p14 chr 19	NC_000019.10:g.49314108dup
GRCh38.p14 chr 19	NC_000019.10:g.49314104_49314108dup
GRCh37.p13 chr 19	NC_000019.9:g.49817364_49817365del
GRCh37.p13 chr 19	NC_000019.9:g.49817365del
GRCh37.p13 chr 19	NC_000019.9:g.49817365dup
GRCh37.p13 chr 19	NC_000019.9:g.49817361_49817365dup

Gene: SLC6A16, solute carrier family 6 member 16 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
SLC6A16 transcript	NM_014037.3:c.-64-2686_-6… NM_014037.3:c.-64-2686_-64-2685del	N/A	Intron Variant
SLC6A16 transcript variant X6	XM_005258820.4:c.-161-148… XM_005258820.4:c.-161-1488_-161-1487del	N/A	Intron Variant
SLC6A16 transcript variant X7	XM_006723168.4:c.-64-2686… XM_006723168.4:c.-64-2686_-64-2685del	N/A	Intron Variant
SLC6A16 transcript variant X3	XM_011526859.4:c.-64-2686… XM_011526859.4:c.-64-2686_-64-2685del	N/A	Intron Variant
SLC6A16 transcript variant X5	XM_011526860.3:c.3-2686_3… XM_011526860.3:c.3-2686_3-2685del	N/A	Intron Variant
SLC6A16 transcript variant X8	XM_024451472.2:c.-81-2669… XM_024451472.2:c.-81-2669_-81-2668del	N/A	Intron Variant
SLC6A16 transcript variant X1	XM_047438701.1:c.97-2669_… XM_047438701.1:c.97-2669_97-2668del	N/A	Intron Variant
SLC6A16 transcript variant X2	XM_047438702.1:c.97-2669_… XM_047438702.1:c.97-2669_97-2668del	N/A	Intron Variant
SLC6A16 transcript variant X4	XM_047438703.1:c.6-2686_6… XM_047438703.1:c.6-2686_6-2685del	N/A	Intron Variant
SLC6A16 transcript variant X10	XM_047438704.1:c.-26-3587… XM_047438704.1:c.-26-3587_-26-3586del	N/A	Intron Variant
SLC6A16 transcript variant X9	XM_011526861.4:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₃=	delAA	delA	dupA	dup(A)₅
GRCh38.p14 chr 19	NC_000019.10:g.49314096_49314108=	NC_000019.10:g.49314107_49314108del	NC_000019.10:g.49314108del	NC_000019.10:g.49314108dup	NC_000019.10:g.49314104_49314108dup
GRCh37.p13 chr 19	NC_000019.9:g.49817353_49817365=	NC_000019.9:g.49817364_49817365del	NC_000019.9:g.49817365del	NC_000019.9:g.49817365dup	NC_000019.9:g.49817361_49817365dup
SLC6A16 transcript	NM_014037.2:c.-64-2685=	NM_014037.2:c.-64-2686_-64-2685del	NM_014037.2:c.-64-2685del	NM_014037.2:c.-64-2685dup	NM_014037.2:c.-64-2689_-64-2685dup
SLC6A16 transcript	NM_014037.3:c.-64-2685=	NM_014037.3:c.-64-2686_-64-2685del	NM_014037.3:c.-64-2685del	NM_014037.3:c.-64-2685dup	NM_014037.3:c.-64-2689_-64-2685dup
SLC6A16 transcript variant X1	XM_005258819.1:c.183-2685=	XM_005258819.1:c.183-2686_183-2685del	XM_005258819.1:c.183-2685del	XM_005258819.1:c.183-2685dup	XM_005258819.1:c.183-2689_183-2685dup
SLC6A16 transcript variant X3	XM_005258820.1:c.-161-1487=	XM_005258820.1:c.-161-1488_-161-1487del	XM_005258820.1:c.-161-1487del	XM_005258820.1:c.-161-1487dup	XM_005258820.1:c.-161-1491_-161-1487dup
SLC6A16 transcript variant X6	XM_005258820.4:c.-161-1487=	XM_005258820.4:c.-161-1488_-161-1487del	XM_005258820.4:c.-161-1487del	XM_005258820.4:c.-161-1487dup	XM_005258820.4:c.-161-1491_-161-1487dup
SLC6A16 transcript variant X7	XM_006723168.4:c.-64-2685=	XM_006723168.4:c.-64-2686_-64-2685del	XM_006723168.4:c.-64-2685del	XM_006723168.4:c.-64-2685dup	XM_006723168.4:c.-64-2689_-64-2685dup
SLC6A16 transcript variant X3	XM_011526859.4:c.-64-2685=	XM_011526859.4:c.-64-2686_-64-2685del	XM_011526859.4:c.-64-2685del	XM_011526859.4:c.-64-2685dup	XM_011526859.4:c.-64-2689_-64-2685dup
SLC6A16 transcript variant X5	XM_011526860.3:c.3-2685=	XM_011526860.3:c.3-2686_3-2685del	XM_011526860.3:c.3-2685del	XM_011526860.3:c.3-2685dup	XM_011526860.3:c.3-2689_3-2685dup
SLC6A16 transcript variant X8	XM_024451472.2:c.-81-2668=	XM_024451472.2:c.-81-2669_-81-2668del	XM_024451472.2:c.-81-2668del	XM_024451472.2:c.-81-2668dup	XM_024451472.2:c.-81-2672_-81-2668dup
SLC6A16 transcript variant X1	XM_047438701.1:c.97-2668=	XM_047438701.1:c.97-2669_97-2668del	XM_047438701.1:c.97-2668del	XM_047438701.1:c.97-2668dup	XM_047438701.1:c.97-2672_97-2668dup
SLC6A16 transcript variant X2	XM_047438702.1:c.97-2668=	XM_047438702.1:c.97-2669_97-2668del	XM_047438702.1:c.97-2668del	XM_047438702.1:c.97-2668dup	XM_047438702.1:c.97-2672_97-2668dup
SLC6A16 transcript variant X4	XM_047438703.1:c.6-2685=	XM_047438703.1:c.6-2686_6-2685del	XM_047438703.1:c.6-2685del	XM_047438703.1:c.6-2685dup	XM_047438703.1:c.6-2689_6-2685dup
SLC6A16 transcript variant X10	XM_047438704.1:c.-26-3586=	XM_047438704.1:c.-26-3587_-26-3586del	XM_047438704.1:c.-26-3586del	XM_047438704.1:c.-26-3586dup	XM_047438704.1:c.-26-3590_-26-3586dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

33 SubSNP, 17 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss81114093	Sep 08, 2015 (146)
2	BGI	ss104719511	Dec 06, 2013 (138)
3	GMI	ss289392432	May 04, 2012 (137)
4	BILGI_BIOE	ss666734313	Apr 25, 2013 (138)
5	1000GENOMES	ss1378224217	Aug 21, 2014 (142)
6	EVA_UK10K_ALSPAC	ss1709233612	Apr 01, 2015 (144)
7	EVA_UK10K_TWINSUK	ss1709233646	Apr 01, 2015 (144)
8	EVA_UK10K_ALSPAC	ss1710796780	Apr 01, 2015 (144)
9	EVA_UK10K_TWINSUK	ss1710796790	Apr 01, 2015 (144)
10	HAMMER_LAB	ss1809342018	Sep 08, 2015 (146)
11	SWEGEN	ss3017602414	Nov 17, 2017 (151)
12	BIOINF_KMB_FNS_UNIBA	ss3645524943	Oct 12, 2018 (152)
13	ACPOP	ss3743103599	Jul 13, 2019 (153)
14	PACBIO	ss3788552039	Jul 13, 2019 (153)
15	KHV_HUMAN_GENOMES	ss3821400327	Jul 13, 2019 (153)
16	KOGIC	ss3981521085	Apr 27, 2020 (154)
17	KOGIC	ss3981521086	Apr 27, 2020 (154)
18	GNOMAD	ss4332536788	Apr 26, 2021 (155)
19	GNOMAD	ss4332536789	Apr 26, 2021 (155)
20	GNOMAD	ss4332536790	Apr 26, 2021 (155)
21	TOPMED	ss5077295499	Apr 26, 2021 (155)
22	TOMMO_GENOMICS	ss5228124316	Apr 26, 2021 (155)
23	TOMMO_GENOMICS	ss5228124317	Apr 26, 2021 (155)
24	1000G_HIGH_COVERAGE	ss5307527087	Oct 16, 2022 (156)
25	1000G_HIGH_COVERAGE	ss5307527088	Oct 16, 2022 (156)
26	HUGCELL_USP	ss5500002056	Oct 16, 2022 (156)
27	HUGCELL_USP	ss5500002057	Oct 16, 2022 (156)
28	HUGCELL_USP	ss5500002058	Oct 16, 2022 (156)
29	TOMMO_GENOMICS	ss5786881899	Oct 16, 2022 (156)
30	TOMMO_GENOMICS	ss5786881900	Oct 16, 2022 (156)
31	YY_MCH	ss5817667389	Oct 16, 2022 (156)
32	EVA	ss5852316992	Oct 16, 2022 (156)
33	EVA	ss5928390634	Oct 16, 2022 (156)
34	1000Genomes	NC_000019.9 - 49817353	Oct 12, 2018 (152)
35	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 42564127 (NC_000019.9:49817352:A: 2698/3854) Row 42564128 (NC_000019.9:49817352::AAAAA 81/3854)	-	Oct 12, 2018 (152)
36	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 42564127 (NC_000019.9:49817352:A: 2698/3854) Row 42564128 (NC_000019.9:49817352::AAAAA 81/3854)	-	Oct 12, 2018 (152)
37	gnomAD - Genomes Submission ignored due to conflicting rows: Row 542199300 (NC_000019.10:49314095::A 16/128386) Row 542199301 (NC_000019.10:49314095:A: 3035/128348) Row 542199302 (NC_000019.10:49314095:AA: 2357/128366)	-	Apr 26, 2021 (155)
38	gnomAD - Genomes Submission ignored due to conflicting rows: Row 542199300 (NC_000019.10:49314095::A 16/128386) Row 542199301 (NC_000019.10:49314095:A: 3035/128348) Row 542199302 (NC_000019.10:49314095:AA: 2357/128366)	-	Apr 26, 2021 (155)
39	gnomAD - Genomes Submission ignored due to conflicting rows: Row 542199300 (NC_000019.10:49314095::A 16/128386) Row 542199301 (NC_000019.10:49314095:A: 3035/128348) Row 542199302 (NC_000019.10:49314095:AA: 2357/128366)	-	Apr 26, 2021 (155)
40	Korean Genome Project Submission ignored due to conflicting rows: Row 37899086 (NC_000019.10:49314095:A: 166/1832) Row 37899087 (NC_000019.10:49314096::A 8/1832)	-	Apr 27, 2020 (154)
41	Korean Genome Project Submission ignored due to conflicting rows: Row 37899086 (NC_000019.10:49314095:A: 166/1832) Row 37899087 (NC_000019.10:49314096::A 8/1832)	-	Apr 27, 2020 (154)
42	Northern Sweden	NC_000019.9 - 49817353	Jul 13, 2019 (153)
43	8.3KJPN Submission ignored due to conflicting rows: Row 86093623 (NC_000019.9:49817352:A: 982/16760) Row 86093624 (NC_000019.9:49817352::A 12/16760)	-	Apr 26, 2021 (155)
44	8.3KJPN Submission ignored due to conflicting rows: Row 86093623 (NC_000019.9:49817352:A: 982/16760) Row 86093624 (NC_000019.9:49817352::A 12/16760)	-	Apr 26, 2021 (155)
45	14KJPN Submission ignored due to conflicting rows: Row 120719003 (NC_000019.10:49314095:A: 1759/28256) Row 120719004 (NC_000019.10:49314095::A 22/28256)	-	Oct 16, 2022 (156)
46	14KJPN Submission ignored due to conflicting rows: Row 120719003 (NC_000019.10:49314095:A: 1759/28256) Row 120719004 (NC_000019.10:49314095::A 22/28256)	-	Oct 16, 2022 (156)
47	TopMed	NC_000019.10 - 49314096	Apr 26, 2021 (155)
48	UK 10K study - Twins Submission ignored due to conflicting rows: Row 42564127 (NC_000019.9:49817352:A: 2580/3708) Row 42564128 (NC_000019.9:49817352::AAAAA 52/3708)	-	Oct 12, 2018 (152)
49	UK 10K study - Twins Submission ignored due to conflicting rows: Row 42564127 (NC_000019.9:49817352:A: 2580/3708) Row 42564128 (NC_000019.9:49817352::AAAAA 52/3708)	-	Oct 12, 2018 (152)
50	ALFA	NC_000019.10 - 49314096	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs78343731	May 11, 2012 (137)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss3017602414	NC_000019.9:49817352:AA:	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
292841163, ss4332536790, ss5077295499, ss5307527088, ss5500002057	NC_000019.10:49314095:AA:	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
9999898454	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAA	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAA	(self)
ss81114093, ss289392432	NC_000019.8:54509176:A:	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
76879114, 16388464, ss666734313, ss1378224217, ss1709233612, ss1709233646, ss1809342018, ss3743103599, ss3788552039, ss5228124316	NC_000019.9:49817352:A:	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss3645524943, ss3821400327, ss3981521085, ss4332536789, ss5307527087, ss5500002056, ss5786881899, ss5817667389, ss5852316992, ss5928390634	NC_000019.10:49314095:A:	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
9999898454	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAA	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss104719511	NT_011109.16:22085581:A:	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAA	(self)
ss5228124317	NC_000019.9:49817352::A	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss4332536788, ss5500002058, ss5786881900	NC_000019.10:49314095::A	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
9999898454	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
ss3981521086	NC_000019.10:49314096::A	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAAAA	(self)
	NC_000019.9:49817352::AAAAA	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)
ss1710796780, ss1710796790	NC_000019.9:49817353::AAAAA	NC_000019.10:49314095:AAAAAAAAAAAA… NC_000019.10:49314095:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs59789660

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs59789660