Name: rs59945410
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs59945410

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr3:37806307-37806320 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delGTGT / delGT / dupGT / dupGTGT …
delGTGT / delGT / dupGT / dupGTGT / dup(GT)₃
Variation Type: Indel Insertion and Deletion
Frequency: delGT=0.120904 (32002/264690, TOPMED)
delGT=0.00770 (125/16238, ALFA)
delGT=0.1388 (695/5008, 1000G) (+ 4 more)
delGT=0.1070 (196/1832, Korea1K)
delGT=0.075 (75/998, GoNL)
delGT=0.048 (29/600, NorthernSweden)
delGT=0.03 (1/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: ITGA9 : Intron Variant
ITGA9-AS1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	16238	GTGTGTGTGTGTGT=0.99212	GTGTGTGTGT=0.00000, GTGTGTGTGTGT=0.00770, GTGTGTGTGTGTGTGTGTGT=0.00006, GTGTGTGTGTGTGTGT=0.00012, GTGTGTGTGTGTGTGTGT=0.00000	0.984839	0.000123	0.015038	0
European	Sub	13396	GTGTGTGTGTGTGT=0.99044	GTGTGTGTGT=0.00000, GTGTGTGTGTGT=0.00933, GTGTGTGTGTGTGTGTGTGT=0.00007, GTGTGTGTGTGTGTGT=0.00015, GTGTGTGTGTGTGTGTGT=0.00000	0.98162	0.000149	0.018231	0
African	Sub	1610	GTGTGTGTGTGTGT=1.0000	GTGTGTGTGT=0.0000, GTGTGTGTGTGT=0.0000, GTGTGTGTGTGTGTGTGTGT=0.0000, GTGTGTGTGTGTGTGT=0.0000, GTGTGTGTGTGTGTGTGT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	58	GTGTGTGTGTGTGT=1.00	GTGTGTGTGT=0.00, GTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
African American	Sub	1552	GTGTGTGTGTGTGT=1.0000	GTGTGTGTGT=0.0000, GTGTGTGTGTGT=0.0000, GTGTGTGTGTGTGTGTGTGT=0.0000, GTGTGTGTGTGTGTGT=0.0000, GTGTGTGTGTGTGTGTGT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	96	GTGTGTGTGTGTGT=1.00	GTGTGTGTGT=0.00, GTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	74	GTGTGTGTGTGTGT=1.00	GTGTGTGTGT=0.00, GTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	22	GTGTGTGTGTGTGT=1.00	GTGTGTGTGT=0.00, GTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	100	GTGTGTGTGTGTGT=1.00	GTGTGTGTGT=0.00, GTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	548	GTGTGTGTGTGTGT=1.000	GTGTGTGTGT=0.000, GTGTGTGTGTGT=0.000, GTGTGTGTGTGTGTGTGTGT=0.000, GTGTGTGTGTGTGTGT=0.000, GTGTGTGTGTGTGTGTGT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	82	GTGTGTGTGTGTGT=1.00	GTGTGTGTGT=0.00, GTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGT=0.00, GTGTGTGTGTGTGTGTGT=0.00	1.0	0.0	0.0	N/A
Other	Sub	406	GTGTGTGTGTGTGT=1.000	GTGTGTGTGT=0.000, GTGTGTGTGTGT=0.000, GTGTGTGTGTGTGTGTGTGT=0.000, GTGTGTGTGTGTGTGT=0.000, GTGTGTGTGTGTGTGTGT=0.000	1.0	0.0	0.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	(GT)₇=0.879096	delGT=0.120904
Allele Frequency Aggregator	Total	Global	16238	(GT)₇=0.99212	delGTGT=0.00000, delGT=0.00770, dupGT=0.00012, dupGTGT=0.00000, dup(GT)₃=0.00006
Allele Frequency Aggregator	European	Sub	13396	(GT)₇=0.99044	delGTGT=0.00000, delGT=0.00933, dupGT=0.00015, dupGTGT=0.00000, dup(GT)₃=0.00007
Allele Frequency Aggregator	African	Sub	1610	(GT)₇=1.0000	delGTGT=0.0000, delGT=0.0000, dupGT=0.0000, dupGTGT=0.0000, dup(GT)₃=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	548	(GT)₇=1.000	delGTGT=0.000, delGT=0.000, dupGT=0.000, dupGTGT=0.000, dup(GT)₃=0.000
Allele Frequency Aggregator	Other	Sub	406	(GT)₇=1.000	delGTGT=0.000, delGT=0.000, dupGT=0.000, dupGTGT=0.000, dup(GT)₃=0.000
Allele Frequency Aggregator	Latin American 1	Sub	100	(GT)₇=1.00	delGTGT=0.00, delGT=0.00, dupGT=0.00, dupGTGT=0.00, dup(GT)₃=0.00
Allele Frequency Aggregator	Asian	Sub	96	(GT)₇=1.00	delGTGT=0.00, delGT=0.00, dupGT=0.00, dupGTGT=0.00, dup(GT)₃=0.00
Allele Frequency Aggregator	South Asian	Sub	82	(GT)₇=1.00	delGTGT=0.00, delGT=0.00, dupGT=0.00, dupGTGT=0.00, dup(GT)₃=0.00
1000Genomes	Global	Study-wide	5008	(GT)₇=0.8612	delGT=0.1388
1000Genomes	African	Sub	1322	(GT)₇=0.6891	delGT=0.3109
1000Genomes	East Asian	Sub	1008	(GT)₇=0.9345	delGT=0.0655
1000Genomes	Europe	Sub	1006	(GT)₇=0.9394	delGT=0.0606
1000Genomes	South Asian	Sub	978	(GT)₇=0.891	delGT=0.109
1000Genomes	American	Sub	694	(GT)₇=0.928	delGT=0.072
Korean Genome Project	KOREAN	Study-wide	1832	(GT)₇=0.8930	delGT=0.1070
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	(GT)₇=0.925	delGT=0.075
Northern Sweden	ACPOP	Study-wide	600	(GT)₇=0.952	delGT=0.048
The Danish reference pan genome	Danish	Study-wide	40	(GT)₇=0.97	delGT=0.03

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 3	NC_000003.12:g.37806307GT[5]
GRCh38.p14 chr 3	NC_000003.12:g.37806307GT[6]
GRCh38.p14 chr 3	NC_000003.12:g.37806307GT[8]
GRCh38.p14 chr 3	NC_000003.12:g.37806307GT[9]
GRCh38.p14 chr 3	NC_000003.12:g.37806307GT[10]
GRCh37.p13 chr 3	NC_000003.11:g.37847798GT[5]
GRCh37.p13 chr 3	NC_000003.11:g.37847798GT[6]
GRCh37.p13 chr 3	NC_000003.11:g.37847798GT[8]
GRCh37.p13 chr 3	NC_000003.11:g.37847798GT[9]
GRCh37.p13 chr 3	NC_000003.11:g.37847798GT[10]
ITGA9 RefSeqGene	NG_016166.1:g.358986GT[5]
ITGA9 RefSeqGene	NG_016166.1:g.358986GT[6]
ITGA9 RefSeqGene	NG_016166.1:g.358986GT[8]
ITGA9 RefSeqGene	NG_016166.1:g.358986GT[9]
ITGA9 RefSeqGene	NG_016166.1:g.358986GT[10]
GRCh38.p14 chr 3 fix patch HG2069_PATCH	NW_025791771.1:g.378964GT[5]
GRCh38.p14 chr 3 fix patch HG2069_PATCH	NW_025791771.1:g.378964GT[6]
GRCh38.p14 chr 3 fix patch HG2069_PATCH	NW_025791771.1:g.378964GT[8]
GRCh38.p14 chr 3 fix patch HG2069_PATCH	NW_025791771.1:g.378964GT[9]
GRCh38.p14 chr 3 fix patch HG2069_PATCH	NW_025791771.1:g.378964GT[10]

Gene: ITGA9, integrin subunit alpha 9 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ITGA9 transcript	NM_002207.3:c.3009+2365GT… NM_002207.3:c.3009+2365GT[5]	N/A	Intron Variant

Gene: ITGA9-AS1, ITGA9 antisense RNA 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ITGA9-AS1 transcript variant 1	NR_110531.1:n.	N/A	Intron Variant
ITGA9-AS1 transcript variant 2	NR_110532.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(GT)₇=	delGTGT	delGT	dupGT	dupGTGT	dup(GT)₃
GRCh38.p14 chr 3	NC_000003.12:g.37806307_37806320=	NC_000003.12:g.37806307GT[5]	NC_000003.12:g.37806307GT[6]	NC_000003.12:g.37806307GT[8]	NC_000003.12:g.37806307GT[9]	NC_000003.12:g.37806307GT[10]
GRCh37.p13 chr 3	NC_000003.11:g.37847798_37847811=	NC_000003.11:g.37847798GT[5]	NC_000003.11:g.37847798GT[6]	NC_000003.11:g.37847798GT[8]	NC_000003.11:g.37847798GT[9]	NC_000003.11:g.37847798GT[10]
ITGA9 RefSeqGene	NG_016166.1:g.358986_358999=	NG_016166.1:g.358986GT[5]	NG_016166.1:g.358986GT[6]	NG_016166.1:g.358986GT[8]	NG_016166.1:g.358986GT[9]	NG_016166.1:g.358986GT[10]
GRCh38.p14 chr 3 fix patch HG2069_PATCH	NW_025791771.1:g.378964_378977=	NW_025791771.1:g.378964GT[5]	NW_025791771.1:g.378964GT[6]	NW_025791771.1:g.378964GT[8]	NW_025791771.1:g.378964GT[9]	NW_025791771.1:g.378964GT[10]
ITGA9 transcript	NM_002207.2:c.3009+2365=	NM_002207.2:c.3009+2365GT[5]	NM_002207.2:c.3009+2365GT[6]	NM_002207.2:c.3009+2365GT[8]	NM_002207.2:c.3009+2365GT[9]	NM_002207.2:c.3009+2365GT[10]
ITGA9 transcript	NM_002207.3:c.3009+2365=	NM_002207.3:c.3009+2365GT[5]	NM_002207.3:c.3009+2365GT[6]	NM_002207.3:c.3009+2365GT[8]	NM_002207.3:c.3009+2365GT[9]	NM_002207.3:c.3009+2365GT[10]

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

44 SubSNP, 19 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss82374300	Sep 08, 2015 (146)
2	BUSHMAN	ss193666913	Jul 04, 2010 (132)
3	GMI	ss288344854	May 04, 2012 (137)
4	1000GENOMES	ss326360304	May 09, 2011 (137)
5	1000GENOMES	ss326382455	May 09, 2011 (137)
6	LUNTER	ss551224567	Apr 25, 2013 (138)
7	LUNTER	ss553014219	Apr 25, 2013 (138)
8	TISHKOFF	ss553988508	Apr 25, 2013 (138)
9	SSMP	ss663406279	Apr 01, 2015 (144)
10	EVA-GONL	ss978486135	Aug 21, 2014 (142)
11	1000GENOMES	ss1370222218	Aug 21, 2014 (142)
12	DDI	ss1536348993	Apr 01, 2015 (144)
13	EVA_GENOME_DK	ss1575919768	Apr 01, 2015 (144)
14	EVA_UK10K_TWINSUK	ss1703587365	Apr 01, 2015 (144)
15	EVA_UK10K_ALSPAC	ss1703587366	Apr 01, 2015 (144)
16	EVA_UK10K_ALSPAC	ss1710076070	Apr 01, 2015 (144)
17	EVA_UK10K_TWINSUK	ss1710076081	Apr 01, 2015 (144)
18	HAMMER_LAB	ss1799152469	Sep 08, 2015 (146)
19	JJLAB	ss2030507732	Sep 14, 2016 (149)
20	SWEGEN	ss2992145940	Nov 08, 2017 (151)
21	MCHAISSO	ss3064904037	Nov 08, 2017 (151)
22	MCHAISSO	ss3065875934	Nov 08, 2017 (151)
23	EVA_DECODE	ss3709028547	Jul 13, 2019 (153)
24	EVA_DECODE	ss3709028548	Jul 13, 2019 (153)
25	ACPOP	ss3729803316	Jul 13, 2019 (153)
26	KHV_HUMAN_GENOMES	ss3803052691	Jul 13, 2019 (153)
27	EVA	ss3827761379	Apr 25, 2020 (154)
28	KOGIC	ss3951040257	Apr 25, 2020 (154)
29	GNOMAD	ss4069225721	Apr 26, 2021 (155)
30	GNOMAD	ss4069225722	Apr 26, 2021 (155)
31	GNOMAD	ss4069225724	Apr 26, 2021 (155)
32	GNOMAD	ss4069225725	Apr 26, 2021 (155)
33	TOPMED	ss4561008987	Apr 26, 2021 (155)
34	TOMMO_GENOMICS	ss5158677806	Apr 26, 2021 (155)
35	TOMMO_GENOMICS	ss5158677807	Apr 26, 2021 (155)
36	1000G_HIGH_COVERAGE	ss5253730059	Oct 13, 2022 (156)
37	1000G_HIGH_COVERAGE	ss5253730061	Oct 13, 2022 (156)
38	HUGCELL_USP	ss5453161212	Oct 13, 2022 (156)
39	TOMMO_GENOMICS	ss5690190989	Oct 13, 2022 (156)
40	TOMMO_GENOMICS	ss5690190990	Oct 13, 2022 (156)
41	EVA	ss5825615172	Oct 13, 2022 (156)
42	EVA	ss5825615173	Oct 13, 2022 (156)
43	EVA	ss5825615174	Oct 13, 2022 (156)
44	EVA	ss5853573654	Oct 13, 2022 (156)
45	1000Genomes	NC_000003.11 - 37847798	Oct 12, 2018 (152)
46	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 8203082 (NC_000003.11:37847797:GT: 348/3854) Row 8203083 (NC_000003.11:37847797::GT 15/3854)	-	Oct 12, 2018 (152)
47	The Avon Longitudinal Study of Parents and Children Submission ignored due to conflicting rows: Row 8203082 (NC_000003.11:37847797:GT: 348/3854) Row 8203083 (NC_000003.11:37847797::GT 15/3854)	-	Oct 12, 2018 (152)
48	The Danish reference pan genome	NC_000003.11 - 37847798	Apr 25, 2020 (154)
49	gnomAD - Genomes Submission ignored due to conflicting rows: Row 104715385 (NC_000003.12:37806306::GT 72/137248) Row 104715386 (NC_000003.12:37806306::GTGTGT 1/137254) Row 104715388 (NC_000003.12:37806306:GT: 16095/137172)...	-	Apr 26, 2021 (155)
50	gnomAD - Genomes Submission ignored due to conflicting rows: Row 104715385 (NC_000003.12:37806306::GT 72/137248) Row 104715386 (NC_000003.12:37806306::GTGTGT 1/137254) Row 104715388 (NC_000003.12:37806306:GT: 16095/137172)...	-	Apr 26, 2021 (155)
51	gnomAD - Genomes Submission ignored due to conflicting rows: Row 104715385 (NC_000003.12:37806306::GT 72/137248) Row 104715386 (NC_000003.12:37806306::GTGTGT 1/137254) Row 104715388 (NC_000003.12:37806306:GT: 16095/137172)...	-	Apr 26, 2021 (155)
52	gnomAD - Genomes Submission ignored due to conflicting rows: Row 104715385 (NC_000003.12:37806306::GT 72/137248) Row 104715386 (NC_000003.12:37806306::GTGTGT 1/137254) Row 104715388 (NC_000003.12:37806306:GT: 16095/137172)...	-	Apr 26, 2021 (155)
53	Genome of the Netherlands Release 5	NC_000003.11 - 37847798	Apr 25, 2020 (154)
54	Korean Genome Project	NC_000003.12 - 37806307	Apr 25, 2020 (154)
55	Northern Sweden	NC_000003.11 - 37847798	Jul 13, 2019 (153)
56	8.3KJPN Submission ignored due to conflicting rows: Row 16647113 (NC_000003.11:37847797:GT: 1320/16760) Row 16647114 (NC_000003.11:37847797::GT 5/16760)	-	Apr 26, 2021 (155)
57	8.3KJPN Submission ignored due to conflicting rows: Row 16647113 (NC_000003.11:37847797:GT: 1320/16760) Row 16647114 (NC_000003.11:37847797::GT 5/16760)	-	Apr 26, 2021 (155)
58	14KJPN Submission ignored due to conflicting rows: Row 24028093 (NC_000003.12:37806306:GT: 2156/28258) Row 24028094 (NC_000003.12:37806306::GT 4/28258)	-	Oct 13, 2022 (156)
59	14KJPN Submission ignored due to conflicting rows: Row 24028093 (NC_000003.12:37806306:GT: 2156/28258) Row 24028094 (NC_000003.12:37806306::GT 4/28258)	-	Oct 13, 2022 (156)
60	TopMed	NC_000003.12 - 37806307	Apr 26, 2021 (155)
61	UK 10K study - Twins Submission ignored due to conflicting rows: Row 8203082 (NC_000003.11:37847797:GT: 304/3708) Row 8203083 (NC_000003.11:37847797::GT 5/3708)	-	Oct 12, 2018 (152)
62	UK 10K study - Twins Submission ignored due to conflicting rows: Row 8203082 (NC_000003.11:37847797:GT: 304/3708) Row 8203083 (NC_000003.11:37847797::GT 5/3708)	-	Oct 12, 2018 (152)
63	ALFA	NC_000003.12 - 37806307	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs72093409	May 11, 2012 (137)
rs147992020	May 11, 2012 (137)
rs375740716	May 15, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss5825615174	NC_000003.11:37847797:GTGT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGT
ss4069225725	NC_000003.12:37806306:GTGT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGT	(self)
7920528586	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGT	(self)
ss82374300	NC_000003.9:37822813:GT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	(self)
ss288344854, ss326360304, ss326382455, ss551224567, ss553014219	NC_000003.10:37822801:GT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	(self)
14763247, 819307, 3604257, 3088181, ss663406279, ss978486135, ss1370222218, ss1536348993, ss1575919768, ss1703587365, ss1703587366, ss1799152469, ss2030507732, ss2992145940, ss3729803316, ss3827761379, ss5158677806, ss5825615172	NC_000003.11:37847797:GT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	(self)
ss553988508	NC_000003.11:37847809:GT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	(self)
7418258, 398386542, ss3064904037, ss3065875934, ss3709028548, ss3803052691, ss3951040257, ss4069225724, ss4561008987, ss5253730059, ss5453161212, ss5690190989, ss5853573654	NC_000003.12:37806306:GT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	(self)
7920528586	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	(self)
ss193666913	NT_022517.19:37796318:GT:	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGT	(self)
ss5158677807, ss5825615173	NC_000003.11:37847797::GT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGT	(self)
ss1710076070, ss1710076081	NC_000003.11:37847799::GT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGT	(self)
ss4069225721, ss5253730061, ss5690190990	NC_000003.12:37806306::GT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGT	(self)
7920528586	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGT	(self)
ss3709028547	NC_000003.12:37806308::GT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGT	(self)
7920528586	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGT	(self)
ss4069225722	NC_000003.12:37806306::GTGTGT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGT	(self)
7920528586	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGT	NC_000003.12:37806306:GTGTGTGTGTGT… NC_000003.12:37806306:GTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs59945410

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs59945410