Name: rs61565898
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs61565898

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr16:29450779-29450791 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₁₀ / del(T)₆ / del(T)₅ / del…
del(T)₁₀ / del(T)₆ / del(T)₅ / del(T)₄ / delTTT / delTT / delT / dupT / dupTT / dupTTT
Variation Type: Indel Insertion and Deletion
Frequency: del(T)₆=0.0000 (0/5614, ALFA)
del(T)₅=0.0000 (0/5614, ALFA)
del(T)₄=0.0000 (0/5614, ALFA) (+ 6 more)
delTTT=0.0000 (0/5614, ALFA)
delTT=0.0000 (0/5614, ALFA)
delT=0.0000 (0/5614, ALFA)
dupT=0.0000 (0/5614, ALFA)
dupTT=0.0000 (0/5614, ALFA)
dupTTT=0.0000 (0/5614, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: BOLA2-SMG1P6 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	HWEP
Total	Global	5614	TTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000	1.0	N/A
European	Sub	3352	TTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000	1.0	N/A
African	Sub	1444	TTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000	1.0	N/A
African Others	Sub	62	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00	1.0	N/A
African American	Sub	1382	TTTTTTTTTTTTT=1.0000	TTTTTTT=0.0000, TTTTTTTT=0.0000, TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000	1.0	N/A
Asian	Sub	62	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00	1.0	N/A
East Asian	Sub	52	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00	1.0	N/A
Other Asian	Sub	10	TTTTTTTTTTTTT=1.0	TTTTTTT=0.0, TTTTTTTT=0.0, TTTTTTTTT=0.0, TTTTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0	1.0	N/A
Latin American 1	Sub	84	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00	1.0	N/A
Latin American 2	Sub	386	TTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTT=0.000, TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000	1.0	N/A
South Asian	Sub	62	TTTTTTTTTTTTT=1.00	TTTTTTT=0.00, TTTTTTTT=0.00, TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00	1.0	N/A
Other	Sub	224	TTTTTTTTTTTTT=1.000	TTTTTTT=0.000, TTTTTTTT=0.000, TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000	1.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	5614	(T)₁₃=1.0000	del(T)₆=0.0000, del(T)₅=0.0000, del(T)₄=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	European	Sub	3352	(T)₁₃=1.0000	del(T)₆=0.0000, del(T)₅=0.0000, del(T)₄=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	African	Sub	1444	(T)₁₃=1.0000	del(T)₆=0.0000, del(T)₅=0.0000, del(T)₄=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	386	(T)₁₃=1.000	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	224	(T)₁₃=1.000	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Latin American 1	Sub	84	(T)₁₃=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	South Asian	Sub	62	(T)₁₃=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Asian	Sub	62	(T)₁₃=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 16	NC_000016.10:g.29450782_29450791del
GRCh38.p14 chr 16	NC_000016.10:g.29450786_29450791del
GRCh38.p14 chr 16	NC_000016.10:g.29450787_29450791del
GRCh38.p14 chr 16	NC_000016.10:g.29450788_29450791del
GRCh38.p14 chr 16	NC_000016.10:g.29450789_29450791del
GRCh38.p14 chr 16	NC_000016.10:g.29450790_29450791del
GRCh38.p14 chr 16	NC_000016.10:g.29450791del
GRCh38.p14 chr 16	NC_000016.10:g.29450791dup
GRCh38.p14 chr 16	NC_000016.10:g.29450790_29450791dup
GRCh38.p14 chr 16	NC_000016.10:g.29450789_29450791dup
GRCh37.p13 chr 16	NC_000016.9:g.29462103_29462112del
GRCh37.p13 chr 16	NC_000016.9:g.29462107_29462112del
GRCh37.p13 chr 16	NC_000016.9:g.29462108_29462112del
GRCh37.p13 chr 16	NC_000016.9:g.29462109_29462112del
GRCh37.p13 chr 16	NC_000016.9:g.29462110_29462112del
GRCh37.p13 chr 16	NC_000016.9:g.29462111_29462112del
GRCh37.p13 chr 16	NC_000016.9:g.29462112del
GRCh37.p13 chr 16	NC_000016.9:g.29462112dup
GRCh37.p13 chr 16	NC_000016.9:g.29462111_29462112dup
GRCh37.p13 chr 16	NC_000016.9:g.29462110_29462112dup

Gene: BOLA2-SMG1P6, BOLA2-SMG1P6 readthrough (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
BOLA2-SMG1P6 transcript variant 1	NM_001320622.1:c.321+3228… NM_001320622.1:c.321+3228_321+3237del	N/A	Intron Variant
BOLA2-SMG1P6 transcript variant 2	NM_001320623.1:c.359+3228… NM_001320623.1:c.359+3228_359+3237del	N/A	Intron Variant
BOLA2-SMG1P6 transcript variant 3	NM_001320624.1:c.261+3403… NM_001320624.1:c.261+3403_261+3412del	N/A	Intron Variant
BOLA2-SMG1P6 transcript variant 4	NM_001320625.1:c.5+3403_5… NM_001320625.1:c.5+3403_5+3412del	N/A	Intron Variant
BOLA2-SMG1P6 transcript variant 5	NM_001320627.1:c.-16+3228… NM_001320627.1:c.-16+3228_-16+3237del	N/A	Intron Variant
BOLA2-SMG1P6 transcript variant 6	NM_001320628.1:c.-16+3228… NM_001320628.1:c.-16+3228_-16+3237del	N/A	Intron Variant
BOLA2-SMG1P6 transcript variant 7	NR_135316.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₃=	del(T)₁₀	del(T)₆	del(T)₅	del(T)₄	delTTT	delTT	delT	dupT	dupTT	dupTTT
GRCh38.p14 chr 16	NC_000016.10:g.29450779_29450791=	NC_000016.10:g.29450782_29450791del	NC_000016.10:g.29450786_29450791del	NC_000016.10:g.29450787_29450791del	NC_000016.10:g.29450788_29450791del	NC_000016.10:g.29450789_29450791del	NC_000016.10:g.29450790_29450791del	NC_000016.10:g.29450791del	NC_000016.10:g.29450791dup	NC_000016.10:g.29450790_29450791dup	NC_000016.10:g.29450789_29450791dup
GRCh37.p13 chr 16	NC_000016.9:g.29462100_29462112=	NC_000016.9:g.29462103_29462112del	NC_000016.9:g.29462107_29462112del	NC_000016.9:g.29462108_29462112del	NC_000016.9:g.29462109_29462112del	NC_000016.9:g.29462110_29462112del	NC_000016.9:g.29462111_29462112del	NC_000016.9:g.29462112del	NC_000016.9:g.29462112dup	NC_000016.9:g.29462111_29462112dup	NC_000016.9:g.29462110_29462112dup
BOLA2-SMG1P6 transcript variant 1	NM_001320622.1:c.321+3237=	NM_001320622.1:c.321+3228_321+3237del	NM_001320622.1:c.321+3232_321+3237del	NM_001320622.1:c.321+3233_321+3237del	NM_001320622.1:c.321+3234_321+3237del	NM_001320622.1:c.321+3235_321+3237del	NM_001320622.1:c.321+3236_321+3237del	NM_001320622.1:c.321+3237del	NM_001320622.1:c.321+3237dup	NM_001320622.1:c.321+3236_321+3237dup	NM_001320622.1:c.321+3235_321+3237dup
BOLA2-SMG1P6 transcript variant 2	NM_001320623.1:c.359+3237=	NM_001320623.1:c.359+3228_359+3237del	NM_001320623.1:c.359+3232_359+3237del	NM_001320623.1:c.359+3233_359+3237del	NM_001320623.1:c.359+3234_359+3237del	NM_001320623.1:c.359+3235_359+3237del	NM_001320623.1:c.359+3236_359+3237del	NM_001320623.1:c.359+3237del	NM_001320623.1:c.359+3237dup	NM_001320623.1:c.359+3236_359+3237dup	NM_001320623.1:c.359+3235_359+3237dup
BOLA2-SMG1P6 transcript variant 3	NM_001320624.1:c.261+3412=	NM_001320624.1:c.261+3403_261+3412del	NM_001320624.1:c.261+3407_261+3412del	NM_001320624.1:c.261+3408_261+3412del	NM_001320624.1:c.261+3409_261+3412del	NM_001320624.1:c.261+3410_261+3412del	NM_001320624.1:c.261+3411_261+3412del	NM_001320624.1:c.261+3412del	NM_001320624.1:c.261+3412dup	NM_001320624.1:c.261+3411_261+3412dup	NM_001320624.1:c.261+3410_261+3412dup
BOLA2-SMG1P6 transcript variant 4	NM_001320625.1:c.5+3412=	NM_001320625.1:c.5+3403_5+3412del	NM_001320625.1:c.5+3407_5+3412del	NM_001320625.1:c.5+3408_5+3412del	NM_001320625.1:c.5+3409_5+3412del	NM_001320625.1:c.5+3410_5+3412del	NM_001320625.1:c.5+3411_5+3412del	NM_001320625.1:c.5+3412del	NM_001320625.1:c.5+3412dup	NM_001320625.1:c.5+3411_5+3412dup	NM_001320625.1:c.5+3410_5+3412dup
BOLA2-SMG1P6 transcript variant 5	NM_001320627.1:c.-16+3237=	NM_001320627.1:c.-16+3228_-16+3237del	NM_001320627.1:c.-16+3232_-16+3237del	NM_001320627.1:c.-16+3233_-16+3237del	NM_001320627.1:c.-16+3234_-16+3237del	NM_001320627.1:c.-16+3235_-16+3237del	NM_001320627.1:c.-16+3236_-16+3237del	NM_001320627.1:c.-16+3237del	NM_001320627.1:c.-16+3237dup	NM_001320627.1:c.-16+3236_-16+3237dup	NM_001320627.1:c.-16+3235_-16+3237dup
BOLA2-SMG1P6 transcript variant 6	NM_001320628.1:c.-16+3237=	NM_001320628.1:c.-16+3228_-16+3237del	NM_001320628.1:c.-16+3232_-16+3237del	NM_001320628.1:c.-16+3233_-16+3237del	NM_001320628.1:c.-16+3234_-16+3237del	NM_001320628.1:c.-16+3235_-16+3237del	NM_001320628.1:c.-16+3236_-16+3237del	NM_001320628.1:c.-16+3237del	NM_001320628.1:c.-16+3237dup	NM_001320628.1:c.-16+3236_-16+3237dup	NM_001320628.1:c.-16+3235_-16+3237dup
BOLA2 transcript variant X1	XM_005255415.1:c.359+3237=	XM_005255415.1:c.359+3228_359+3237del	XM_005255415.1:c.359+3232_359+3237del	XM_005255415.1:c.359+3233_359+3237del	XM_005255415.1:c.359+3234_359+3237del	XM_005255415.1:c.359+3235_359+3237del	XM_005255415.1:c.359+3236_359+3237del	XM_005255415.1:c.359+3237del	XM_005255415.1:c.359+3237dup	XM_005255415.1:c.359+3236_359+3237dup	XM_005255415.1:c.359+3235_359+3237dup
BOLA2 transcript variant X2	XM_005255416.1:c.-16+3237=	XM_005255416.1:c.-16+3228_-16+3237del	XM_005255416.1:c.-16+3232_-16+3237del	XM_005255416.1:c.-16+3233_-16+3237del	XM_005255416.1:c.-16+3234_-16+3237del	XM_005255416.1:c.-16+3235_-16+3237del	XM_005255416.1:c.-16+3236_-16+3237del	XM_005255416.1:c.-16+3237del	XM_005255416.1:c.-16+3237dup	XM_005255416.1:c.-16+3236_-16+3237dup	XM_005255416.1:c.-16+3235_-16+3237dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

30 SubSNP, 23 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss81871147	Dec 16, 2007 (129)
2	HGSV	ss81959168	Dec 16, 2007 (129)
3	EVA_DECODE	ss3699120535	Jul 13, 2019 (153)
4	EVA_DECODE	ss3699120538	Jul 13, 2019 (153)
5	EVA_DECODE	ss3699120539	Jul 13, 2019 (153)
6	EVA_DECODE	ss3699120540	Jul 13, 2019 (153)
7	PACBIO	ss3793006941	Jul 13, 2019 (153)
8	KOGIC	ss3977386983	Apr 27, 2020 (154)
9	KOGIC	ss3977386984	Apr 27, 2020 (154)
10	GNOMAD	ss4299340464	Apr 26, 2021 (155)
11	GNOMAD	ss4299340468	Apr 26, 2021 (155)
12	GNOMAD	ss4299340469	Apr 26, 2021 (155)
13	GNOMAD	ss4299340470	Apr 26, 2021 (155)
14	GNOMAD	ss4299340471	Apr 26, 2021 (155)
15	GNOMAD	ss4299340472	Apr 26, 2021 (155)
16	GNOMAD	ss4299340473	Apr 26, 2021 (155)
17	GNOMAD	ss4299340474	Apr 26, 2021 (155)
18	GNOMAD	ss4299340475	Apr 26, 2021 (155)
19	GNOMAD	ss4299340476	Apr 26, 2021 (155)
20	TOMMO_GENOMICS	ss5219140985	Apr 26, 2021 (155)
21	TOMMO_GENOMICS	ss5219140986	Apr 26, 2021 (155)
22	TOMMO_GENOMICS	ss5219140987	Apr 26, 2021 (155)
23	TOMMO_GENOMICS	ss5219140988	Apr 26, 2021 (155)
24	TOMMO_GENOMICS	ss5219140989	Apr 26, 2021 (155)
25	TOMMO_GENOMICS	ss5773830292	Oct 16, 2022 (156)
26	TOMMO_GENOMICS	ss5773830293	Oct 16, 2022 (156)
27	TOMMO_GENOMICS	ss5773830294	Oct 16, 2022 (156)
28	TOMMO_GENOMICS	ss5773830295	Oct 16, 2022 (156)
29	TOMMO_GENOMICS	ss5773830296	Oct 16, 2022 (156)
30	EVA	ss5851547305	Oct 16, 2022 (156)
31	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
32	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
33	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
34	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
35	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
36	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
37	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
38	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
39	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
40	gnomAD - Genomes Submission ignored due to conflicting rows: Row 487002349 (NC_000016.10:29450778::T 122/41432) Row 487002353 (NC_000016.10:29450778::TT 327/41400) Row 487002354 (NC_000016.10:29450778::TTT 2/41450)...	-	Apr 26, 2021 (155)
41	Korean Genome Project Submission ignored due to conflicting rows: Row 33764984 (NC_000016.10:29450778:TT: 35/1366) Row 33764985 (NC_000016.10:29450779:T: 121/1366)	-	Apr 27, 2020 (154)
42	Korean Genome Project Submission ignored due to conflicting rows: Row 33764984 (NC_000016.10:29450778:TT: 35/1366) Row 33764985 (NC_000016.10:29450779:T: 121/1366)	-	Apr 27, 2020 (154)
43	8.3KJPN Submission ignored due to conflicting rows: Row 77110292 (NC_000016.9:29462099:T: 1191/14250) Row 77110293 (NC_000016.9:29462099:TT: 381/14250) Row 77110294 (NC_000016.9:29462099:TTT: 23/14250)...	-	Apr 26, 2021 (155)
44	8.3KJPN Submission ignored due to conflicting rows: Row 77110292 (NC_000016.9:29462099:T: 1191/14250) Row 77110293 (NC_000016.9:29462099:TT: 381/14250) Row 77110294 (NC_000016.9:29462099:TTT: 23/14250)...	-	Apr 26, 2021 (155)
45	8.3KJPN Submission ignored due to conflicting rows: Row 77110292 (NC_000016.9:29462099:T: 1191/14250) Row 77110293 (NC_000016.9:29462099:TT: 381/14250) Row 77110294 (NC_000016.9:29462099:TTT: 23/14250)...	-	Apr 26, 2021 (155)
46	8.3KJPN Submission ignored due to conflicting rows: Row 77110292 (NC_000016.9:29462099:T: 1191/14250) Row 77110293 (NC_000016.9:29462099:TT: 381/14250) Row 77110294 (NC_000016.9:29462099:TTT: 23/14250)...	-	Apr 26, 2021 (155)
47	8.3KJPN Submission ignored due to conflicting rows: Row 77110292 (NC_000016.9:29462099:T: 1191/14250) Row 77110293 (NC_000016.9:29462099:TT: 381/14250) Row 77110294 (NC_000016.9:29462099:TTT: 23/14250)...	-	Apr 26, 2021 (155)
48	14KJPN Submission ignored due to conflicting rows: Row 107667396 (NC_000016.10:29450778:T: 2030/25024) Row 107667397 (NC_000016.10:29450778:TT: 503/25024) Row 107667398 (NC_000016.10:29450778:TTT: 61/25024)...	-	Oct 16, 2022 (156)
49	14KJPN Submission ignored due to conflicting rows: Row 107667396 (NC_000016.10:29450778:T: 2030/25024) Row 107667397 (NC_000016.10:29450778:TT: 503/25024) Row 107667398 (NC_000016.10:29450778:TTT: 61/25024)...	-	Oct 16, 2022 (156)
50	14KJPN Submission ignored due to conflicting rows: Row 107667396 (NC_000016.10:29450778:T: 2030/25024) Row 107667397 (NC_000016.10:29450778:TT: 503/25024) Row 107667398 (NC_000016.10:29450778:TTT: 61/25024)...	-	Oct 16, 2022 (156)
51	14KJPN Submission ignored due to conflicting rows: Row 107667396 (NC_000016.10:29450778:T: 2030/25024) Row 107667397 (NC_000016.10:29450778:TT: 503/25024) Row 107667398 (NC_000016.10:29450778:TTT: 61/25024)...	-	Oct 16, 2022 (156)
52	14KJPN Submission ignored due to conflicting rows: Row 107667396 (NC_000016.10:29450778:T: 2030/25024) Row 107667397 (NC_000016.10:29450778:TT: 503/25024) Row 107667398 (NC_000016.10:29450778:TTT: 61/25024)...	-	Oct 16, 2022 (156)
53	ALFA	NC_000016.10 - 29450779	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4299340476	NC_000016.10:29450778:TTTTTTTTTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTT	(self)
ss4299340475	NC_000016.10:29450778:TTTTTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTT	(self)
ss4299340474	NC_000016.10:29450778:TTTTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTT	(self)
ss81871147, ss81959168	NC_000016.8:29369609:TTTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTT	(self)
ss5219140989	NC_000016.9:29462099:TTTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTT	(self)
ss3699120535, ss4299340473, ss5773830296	NC_000016.10:29450778:TTTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTT	(self)
ss5219140987	NC_000016.9:29462099:TTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTT	(self)
ss4299340472, ss5773830294	NC_000016.10:29450778:TTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTT	(self)
ss3699120538	NC_000016.10:29450779:TTT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTT	(self)
ss5219140986	NC_000016.9:29462099:TT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3977386983, ss4299340471, ss5773830293	NC_000016.10:29450778:TT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3699120539	NC_000016.10:29450780:TT:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3793006941, ss5219140985	NC_000016.9:29462099:T:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss4299340470, ss5773830292, ss5851547305	NC_000016.10:29450778:T:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3977386984	NC_000016.10:29450779:T:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3699120540	NC_000016.10:29450781:T:	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss4299340464	NC_000016.10:29450778::T	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss5219140988	NC_000016.9:29462099::TT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4299340468, ss5773830295	NC_000016.10:29450778::TT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4299340469	NC_000016.10:29450778::TTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
4804513079	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000016.10:29450778:TTTTTTTTTTTT… NC_000016.10:29450778:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs61565898

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs61565898