SNP Links for Gene (Select 105374972) - SNP

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Select item 14915612491.

rs1491561249 has merged into rs1210022653 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT [Show Flanks]
Chromosome:: 6:22649690 (GRCh38)
6:22649919 (GRCh37)
Canonical SPDI:: NC_000006.12:22649679:TTTTTTTTTTTT:TTTTTTTTTT,NC_000006.12:22649679:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000006.12:22649679:TTTTTTTTTTTT:TTTTTTTTTTTTT
Gene:: LINC03005 (Varview), LOC105374973 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
T=0.00973/163 (TOMMO)
HGVS:: NC_000006.12:g.22649690_22649691del, NC_000006.12:g.22649691del, NC_000006.12:g.22649691dup, NC_000006.11:g.22649919_22649920del, NC_000006.11:g.22649920del, NC_000006.11:g.22649920dup

Select item 14915259772.

rs1491525977 [Homo sapiens]

Variant type:: INS
Alleles:: ->CA,CCA,CCT,G,T [Show Flanks]
Chromosome:: 6:22693888 (GRCh38)
6:22694118 (GRCh37)
Canonical SPDI:: NC_000006.12:22693888::CA,NC_000006.12:22693888::CCA,NC_000006.12:22693888::CCT,NC_000006.12:22693888::G,NC_000006.12:22693888::T
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCA=0./0 (ALFA)
CCA=0.000004/1 (TOPMED)
T=0.00006/1 (TOMMO)
HGVS:: NC_000006.12:g.22693888_22693889insCA, NC_000006.12:g.22693888_22693889insCCA, NC_000006.12:g.22693888_22693889insCCT, NC_000006.12:g.22693888_22693889insG, NC_000006.12:g.22693888_22693889insT, NC_000006.11:g.22694117_22694118insCA, NC_000006.11:g.22694117_22694118insCCA, NC_000006.11:g.22694117_22694118insCCT, NC_000006.11:g.22694117_22694118insG, NC_000006.11:g.22694117_22694118insT

Select item 14914988193.

rs1491498819 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTT [Show Flanks]
Chromosome:: 6:22715296 (GRCh38)
6:22715525 (GRCh37)
Canonical SPDI:: NC_000006.12:22715291:TTTTTT:TTTT,NC_000006.12:22715291:TTTTTT:TTTTTTT
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000036/5 (GnomAD)
T=0.000071/2 (TOMMO)
-=0.002729/5 (Korea1K)
HGVS:: NC_000006.12:g.22715296_22715297del, NC_000006.12:g.22715297dup, NC_000006.11:g.22715525_22715526del, NC_000006.11:g.22715526dup

Select item 14914914654.

rs1491491465 has merged into rs10710539 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCCC>-,C,CC,CCC,CCCCC,CCCCCC,CCCCCCC [Show Flanks]
Chromosome:: 6:22693885 (GRCh38)
6:22694114 (GRCh37)
Canonical SPDI:: NC_000006.12:22693876:CCCCCCCCCCCC:CCCCCCCC,NC_000006.12:22693876:CCCCCCCCCCCC:CCCCCCCCC,NC_000006.12:22693876:CCCCCCCCCCCC:CCCCCCCCCC,NC_000006.12:22693876:CCCCCCCCCCCC:CCCCCCCCCCC,NC_000006.12:22693876:CCCCCCCCCCCC:CCCCCCCCCCCCC,NC_000006.12:22693876:CCCCCCCCCCCC:CCCCCCCCCCCCCC,NC_000006.12:22693876:CCCCCCCCCCCC:CCCCCCCCCCCCCCC
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCCCCCCCCC=0./0 (ALFA)
HGVS:: NC_000006.12:g.22693885_22693888del, NC_000006.12:g.22693886_22693888del, NC_000006.12:g.22693887_22693888del, NC_000006.12:g.22693888del, NC_000006.12:g.22693888dup, NC_000006.12:g.22693887_22693888dup, NC_000006.12:g.22693886_22693888dup, NC_000006.11:g.22694114_22694117del, NC_000006.11:g.22694115_22694117del, NC_000006.11:g.22694116_22694117del, NC_000006.11:g.22694117del, NC_000006.11:g.22694117dup, NC_000006.11:g.22694116_22694117dup, NC_000006.11:g.22694115_22694117dup

Select item 14914874615.

rs1491487461 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,G [Show Flanks]
Chromosome:: 6:22693877 (GRCh38)
6:22694107 (GRCh37)
Canonical SPDI:: NC_000006.12:22693877::A,NC_000006.12:22693877::G
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
G=0.000138/1 (GnomAD)
HGVS:: NC_000006.12:g.22693877_22693878insA, NC_000006.12:g.22693877_22693878insG, NC_000006.11:g.22694106_22694107insA, NC_000006.11:g.22694106_22694107insG

Select item 14914309006.

rs1491430900 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 6:22693888 (GRCh38)
6:22694117 (GRCh37)
Canonical SPDI:: NC_000006.12:22693887:CA:
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000006.12:g.22693888_22693889del, NC_000006.11:g.22694117_22694118del

Select item 14914107037.

rs1491410703 has merged into rs149215528 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GA,GAGAGA [Show Flanks]
Chromosome:: 6:22702879 (GRCh38)
6:22703108 (GRCh37)
Canonical SPDI:: NC_000006.12:22702865:AGAGAGAGAGAGAGAGA:AGAGAGAGAGAGA,NC_000006.12:22702865:AGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGA,NC_000006.12:22702865:AGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGA
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAGAGAGAGAGA=0./0 (ALFA)
AG=0.00047/3 (1000Genomes)
HGVS:: NC_000006.12:g.22702867GA[6], NC_000006.12:g.22702867GA[7], NC_000006.12:g.22702867GA[9], NC_000006.11:g.22703096GA[6], NC_000006.11:g.22703096GA[7], NC_000006.11:g.22703096GA[9]

Select item 14912642328.

rs1491264232 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 6:22715292 (GRCh38)
6:22715522 (GRCh37)
Canonical SPDI:: NC_000006.12:22715292::A
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000035/1 (TOMMO)
A=0.000223/1 (Estonian)
A=0.000765/107 (GnomAD)
A=0.002729/5 (Korea1K)
HGVS:: NC_000006.12:g.22715292_22715293insA, NC_000006.11:g.22715521_22715522insA

Select item 14912283149.

rs1491228314 has merged into rs34573706 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 6:22693876 (GRCh38)
6:22694105 (GRCh37)
Canonical SPDI:: NC_000006.12:22693875:AC:
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.14968/555 (TWINSUK)
-=0.16243/626 (ALSPAC)
HGVS:: NC_000006.12:g.22693876_22693877del, NC_000006.11:g.22694105_22694106del

Select item 149121369310.

rs1491213693 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAAA,TATAAA [Show Flanks]
Chromosome:: 6:22644816 (GRCh38)
6:22645046 (GRCh37)
Canonical SPDI:: NC_000006.12:22644816:A:ATAAA,NC_000006.12:22644816:A:ATATAAA
Gene:: LINC03005 (Varview), LOC105374973 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATAAA=0./0 (ALFA)
HGVS:: NC_000006.12:g.22644817_22644818insTAAA, NC_000006.12:g.22644817AT[2]AAA[1], NC_000006.11:g.22645046_22645047insTAAA, NC_000006.11:g.22645046AT[2]AAA[1]

Select item 149121324011.

rs1491213240 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ACC,GC [Show Flanks]
Chromosome:: 6:22693876 (GRCh38)
6:22694106 (GRCh37)
Canonical SPDI:: NC_000006.12:22693876:C:CACC,NC_000006.12:22693876:C:CGC
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CGC=0./0 (ALFA)
CAC=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.22693877_22693878insACC, NC_000006.12:g.22693877_22693878insGC, NC_000006.11:g.22694106_22694107insACC, NC_000006.11:g.22694106_22694107insGC

Select item 149115144212.

rs1491151442 has merged into rs34438001 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT [Show Flanks]
Chromosome:: 6:22685290 (GRCh38)
6:22685519 (GRCh37)
Canonical SPDI:: NC_000006.12:22685278:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000006.12:22685278:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000006.12:22685278:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000006.12:22685278:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000006.12:22685278:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.4077/2042 (1000Genomes)
T=0.425/17 (GENOME_DK)
HGVS:: NC_000006.12:g.22685290_22685291del, NC_000006.12:g.22685291del, NC_000006.12:g.22685291dup, NC_000006.12:g.22685290_22685291dup, NC_000006.12:g.22685289_22685291dup, NC_000006.11:g.22685519_22685520del, NC_000006.11:g.22685520del, NC_000006.11:g.22685520dup, NC_000006.11:g.22685519_22685520dup, NC_000006.11:g.22685518_22685520dup

Select item 149107416113.

rs1491074161 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 6:22693878 (GRCh38)
6:22694108 (GRCh37)
Canonical SPDI:: NC_000006.12:22693878::G
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.00003/1 (GnomAD)
HGVS:: NC_000006.12:g.22693878_22693879insG, NC_000006.11:g.22694107_22694108insG

Select item 149105719314.

rs1491057193 has merged into rs70996696 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 6:22698986 (GRCh38)
6:22699215 (GRCh37)
Canonical SPDI:: NC_000006.12:22698976:AAAAAAAAAAA:AAAAAAAAA,NC_000006.12:22698976:AAAAAAAAAAA:AAAAAAAAAA,NC_000006.12:22698976:AAAAAAAAAAA:AAAAAAAAAAAA,NC_000006.12:22698976:AAAAAAAAAAA:AAAAAAAAAAAAA
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.405/1601 (1000Genomes)
HGVS:: NC_000006.12:g.22698986_22698987del, NC_000006.12:g.22698987del, NC_000006.12:g.22698987dup, NC_000006.12:g.22698986_22698987dup, NC_000006.11:g.22699215_22699216del, NC_000006.11:g.22699216del, NC_000006.11:g.22699216dup, NC_000006.11:g.22699215_22699216dup

Select item 149103859015.

rs1491038590 has merged into rs35444095 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 6:22676090 (GRCh38)
6:22676319 (GRCh37)
Canonical SPDI:: NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000006.12:22676078:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.2542/1273 (1000Genomes)
HGVS:: NC_000006.12:g.22676090_22676093del, NC_000006.12:g.22676091_22676093del, NC_000006.12:g.22676092_22676093del, NC_000006.12:g.22676093del, NC_000006.12:g.22676093dup, NC_000006.12:g.22676092_22676093dup, NC_000006.12:g.22676091_22676093dup, NC_000006.12:g.22676090_22676093dup, NC_000006.12:g.22676081_22676093dup, NC_000006.11:g.22676319_22676322del, NC_000006.11:g.22676320_22676322del, NC_000006.11:g.22676321_22676322del, NC_000006.11:g.22676322del, NC_000006.11:g.22676322dup, NC_000006.11:g.22676321_22676322dup, NC_000006.11:g.22676320_22676322dup, NC_000006.11:g.22676319_22676322dup, NC_000006.11:g.22676310_22676322dup

Select item 149103337316.

rs1491033373 has merged into rs57982782 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 6:22650519 (GRCh38)
6:22650748 (GRCh37)
Canonical SPDI:: NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:22650506:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC03005 (Varview), LOC105374973 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.0203/12 (NorthernSweden)
-=0.1599/801 (1000Genomes)
T=0.375/3 (KOREAN)
HGVS:: NC_000006.12:g.22650519_22650523del, NC_000006.12:g.22650520_22650523del, NC_000006.12:g.22650521_22650523del, NC_000006.12:g.22650522_22650523del, NC_000006.12:g.22650523del, NC_000006.12:g.22650523dup, NC_000006.12:g.22650522_22650523dup, NC_000006.12:g.22650521_22650523dup, NC_000006.12:g.22650520_22650523dup, NC_000006.12:g.22650519_22650523dup, NC_000006.12:g.22650516_22650523dup, NC_000006.12:g.22650523_22650524insTTTTTTTTTTTTTTTTTTTTTT, NC_000006.12:g.22650523_22650524insTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.12:g.22650523_22650524insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.11:g.22650748_22650752del, NC_000006.11:g.22650749_22650752del, NC_000006.11:g.22650750_22650752del, NC_000006.11:g.22650751_22650752del, NC_000006.11:g.22650752del, NC_000006.11:g.22650752dup, NC_000006.11:g.22650751_22650752dup, NC_000006.11:g.22650750_22650752dup, NC_000006.11:g.22650749_22650752dup, NC_000006.11:g.22650748_22650752dup, NC_000006.11:g.22650745_22650752dup, NC_000006.11:g.22650752_22650753insTTTTTTTTTTTTTTTTTTTTTT, NC_000006.11:g.22650752_22650753insTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.11:g.22650752_22650753insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 149103204217.

rs1491032042 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 6:22681248 (GRCh38)
6:22681478 (GRCh37)
Canonical SPDI:: NC_000006.12:22681248::G
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00017/2 (ALFA)
G=0.00038/35 (GnomAD)
HGVS:: NC_000006.12:g.22681248_22681249insG, NC_000006.11:g.22681477_22681478insG

Select item 149101322518.

rs1491013225 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 6:22681252 (GRCh38)
6:22681481 (GRCh37)
Canonical SPDI:: NC_000006.12:22681248:TGTGT:TGT
Gene:: LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGT=0./0 (ALFA)
HGVS:: NC_000006.12:g.22681250GT[1], NC_000006.11:g.22681479GT[1]

Select item 149094103519.

rs1490941035 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:22645344 (GRCh38)
6:22645573 (GRCh37)
Canonical SPDI:: NC_000006.12:22645343:A:G
Gene:: LINC03005 (Varview), LOC105374973 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22645344A>G, NC_000006.11:g.22645573A>G

Select item 149092359620.

rs1490923596 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:22663565 (GRCh38)
6:22663794 (GRCh37)
Canonical SPDI:: NC_000006.12:22663564:C:T
Gene:: LOC102724736 (Varview), LINC03005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22663565C>T, NC_000006.11:g.22663794C>T

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