SNP Links for Gene (Select 285759) - SNP

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Select item 14912817411.

rs1491281741 has merged into rs60002109 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTGTGT>-,GT,GTGT,GTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGT [Show Flanks]
Chromosome:: 6:113903085 (GRCh38)
6:114224249 (GRCh37)
Canonical SPDI:: NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000006.12:113903069:TGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Gene:: LINC02880 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGTGTGTGT=0./0 (ALFA)
HGVS:: NC_000006.12:g.113903071GT[7], NC_000006.12:g.113903071GT[8], NC_000006.12:g.113903071GT[9], NC_000006.12:g.113903071GT[10], NC_000006.12:g.113903071GT[12], NC_000006.12:g.113903071GT[13], NC_000006.12:g.113903071GT[14], NC_000006.12:g.113903071GT[15], NC_000006.12:g.113903071GT[16], NC_000006.12:g.113903071GT[17], NC_000006.11:g.114224235GT[7], NC_000006.11:g.114224235GT[8], NC_000006.11:g.114224235GT[9], NC_000006.11:g.114224235GT[10], NC_000006.11:g.114224235GT[12], NC_000006.11:g.114224235GT[13], NC_000006.11:g.114224235GT[14], NC_000006.11:g.114224235GT[15], NC_000006.11:g.114224235GT[16], NC_000006.11:g.114224235GT[17]

Select item 14910143132.

rs1491014313 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 6:113917439 (GRCh38)
6:114238603 (GRCh37)
Canonical SPDI:: NC_000006.12:113917436:ATAT:AT
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATAT=0./0 (ALFA)
-=0.00002/1 (GnomAD)
HGVS:: NC_000006.12:g.113917437AT[1], NC_000006.11:g.114238601AT[1]

Select item 14907075833.

rs1490707583 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:113909515 (GRCh38)
6:114230679 (GRCh37)
Canonical SPDI:: NC_000006.12:113909514:T:C
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.113909515T>C, NC_000006.11:g.114230679T>C

Select item 14905183544.

rs1490518354 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TT [Show Flanks]
Chromosome:: 6:113917602 (GRCh38)
6:114238767 (GRCh37)
Canonical SPDI:: NC_000006.12:113917602:TT:TTTT
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTTT=0./0 (ALFA)
TT=0.000008/1 (GnomAD)
HGVS:: NC_000006.12:g.113917603_113917604dup, NC_000006.11:g.114238767_114238768dup

Select item 14903333225.

rs1490333322 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 6:113920686 (GRCh38)
6:114241850 (GRCh37)
Canonical SPDI:: NC_000006.12:113920685:G:C,NC_000006.12:113920685:G:T
Gene:: LINC02880 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.113920686G>C, NC_000006.12:g.113920686G>T, NC_000006.11:g.114241850G>C, NC_000006.11:g.114241850G>T, NM_173673.1:c.*511G>C, NM_173673.1:c.*511G>T, NM_001039528.1:c.*511G>C, NM_001039528.1:c.*511G>T, NR_027060.1:n.1050G>C, NR_027060.1:n.1050G>T

Select item 14901461286.

rs1490146128 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:113904342 (GRCh38)
6:114225506 (GRCh37)
Canonical SPDI:: NC_000006.12:113904341:T:G
Gene:: LINC02880 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000034/9 (TOPMED)
HGVS:: NC_000006.12:g.113904342T>G, NC_000006.11:g.114225506T>G, NM_173673.1:c.-98T>G, NM_001039528.1:c.-98T>G

Select item 14897475677.

rs1489747567 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:113916382 (GRCh38)
6:114237546 (GRCh37)
Canonical SPDI:: NC_000006.12:113916381:T:C
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.113916382T>C, NC_000006.11:g.114237546T>C

Select item 14893817298.

rs1489381729 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:113919270 (GRCh38)
6:114240434 (GRCh37)
Canonical SPDI:: NC_000006.12:113919269:C:T
Gene:: LINC02880 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (KOREAN)
T=0.000007/1 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000006.12:g.113919270C>T, NC_000006.11:g.114240434C>T, NM_173673.1:c.*93C>T, NM_001039528.1:c.*93C>T, NR_027060.1:n.632C>T

Select item 14888721389.

rs1488872138 has merged into rs3075819 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCTCTCT>-,CT,CTCT,CTCTCT,CTCTCTCTCT,CTCTCTCTCTCT,CTCTCTCTCTCTCT [Show Flanks]
Chromosome:: 6:113905429 (GRCh38)
6:114226593 (GRCh37)
Canonical SPDI:: NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCT,NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCT,NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCT,NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT,NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT,NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT,NC_000006.12:113905415:TCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCT
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCTCTCTCTCTCT=0./0 (ALFA)
TC=0.482355/2269 (1000Genomes)
-=0.484559/128258 (TOPMED)
HGVS:: NC_000006.12:g.113905417CT[6], NC_000006.12:g.113905417CT[7], NC_000006.12:g.113905417CT[8], NC_000006.12:g.113905417CT[9], NC_000006.12:g.113905417CT[11], NC_000006.12:g.113905417CT[12], NC_000006.12:g.113905417CT[13], NC_000006.11:g.114226581CT[6], NC_000006.11:g.114226581CT[7], NC_000006.11:g.114226581CT[8], NC_000006.11:g.114226581CT[9], NC_000006.11:g.114226581CT[11], NC_000006.11:g.114226581CT[12], NC_000006.11:g.114226581CT[13]

Select item 148881520110.

rs1488815201 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:113916273 (GRCh38)
6:114237437 (GRCh37)
Canonical SPDI:: NC_000006.12:113916272:A:G
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.113916273A>G, NC_000006.11:g.114237437A>G

Select item 148877953411.

rs1488779534 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 6:113904441 (GRCh38)
6:114225605 (GRCh37)
Canonical SPDI:: NC_000006.12:113904440:T:
Gene:: LINC02880 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.113904441del, NC_000006.11:g.114225605del, NM_173673.1:c.2del, NM_001039528.1:c.2del, NR_027060.1:n.55del

Select item 148829828212.

rs1488298282 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 6:113916072 (GRCh38)
6:114237236 (GRCh37)
Canonical SPDI:: NC_000006.12:113916071:A:C,NC_000006.12:113916071:A:G
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.113916072A>C, NC_000006.12:g.113916072A>G, NC_000006.11:g.114237236A>C, NC_000006.11:g.114237236A>G

Select item 148810905313.

rs1488109053 [Homo sapiens]

Variant type:: DELINS
Alleles:: AACA>- [Show Flanks]
Chromosome:: 6:113910090 (GRCh38)
6:114231254 (GRCh37)
Canonical SPDI:: NC_000006.12:113910088:AAACA:A
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.113910090_113910093del, NC_000006.11:g.114231254_114231257del

Select item 148809224214.

rs1488092242 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:113909761 (GRCh38)
6:114230925 (GRCh37)
Canonical SPDI:: NC_000006.12:113909760:A:G
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
HGVS:: NC_000006.12:g.113909761A>G, NC_000006.11:g.114230925A>G

Select item 148804296815.

rs1488042968 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:113907760 (GRCh38)
6:114228924 (GRCh37)
Canonical SPDI:: NC_000006.12:113907759:C:T
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000006.12:g.113907760C>T, NC_000006.11:g.114228924C>T

Select item 148802302016.

rs1488023020 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:113909098 (GRCh38)
6:114230262 (GRCh37)
Canonical SPDI:: NC_000006.12:113909097:C:T
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.113909098C>T, NC_000006.11:g.114230262C>T

Select item 148761358517.

rs1487613585 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:113916512 (GRCh38)
6:114237676 (GRCh37)
Canonical SPDI:: NC_000006.12:113916511:C:A
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.113916512C>A, NC_000006.11:g.114237676C>A

Select item 148755891718.

rs1487558917 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:113902750 (GRCh38)
6:114223914 (GRCh37)
Canonical SPDI:: NC_000006.12:113902749:G:A
Gene:: LINC02880 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.113902750G>A, NC_000006.11:g.114223914G>A

Select item 148753432819.

rs1487534328 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:113915571 (GRCh38)
6:114236735 (GRCh37)
Canonical SPDI:: NC_000006.12:113915570:C:G
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.113915571C>G, NC_000006.11:g.114236735C>G

Select item 148749787320.

rs1487497873 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:113908267 (GRCh38)
6:114229431 (GRCh37)
Canonical SPDI:: NC_000006.12:113908266:G:A
Gene:: LINC02880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.113908267G>A, NC_000006.11:g.114229431G>A

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