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Links from Nucleotide

Items: 1 to 20 of 6898

1.

rs1491574494 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    ->G [Show Flanks]
    Chromosome:
    20:56374352 (GRCh38)
    20:54949409 (GRCh37)
    Canonical SPDI:
    NC_000020.11:56374352:G:GG
    Gene:
    AURKA (Varview)
    Functional Consequence:
    intron_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    GG=0.000285/4 (ALFA)
    G=0.00006/16 (TOPMED)
    G=0.000072/10 (GnomAD)
    HGVS:
    2.

    rs1491544898 has merged into rs1267606855 [Homo sapiens]
      Variant type:
      DELINS
      Alleles:
      CACACA>-,CA,CACA,CACACACA,CACACACACA [Show Flanks]
      Chromosome:
      20:56393141 (GRCh38)
      20:54968197 (GRCh37)
      Canonical SPDI:
      NC_000020.11:56393131:ACACACACACACACA:ACACACACA,NC_000020.11:56393131:ACACACACACACACA:ACACACACACA,NC_000020.11:56393131:ACACACACACACACA:ACACACACACACA,NC_000020.11:56393131:ACACACACACACACA:ACACACACACACACACA,NC_000020.11:56393131:ACACACACACACACA:ACACACACACACACACACA
      Gene:
      CSTF1 (Varview), AURKA (Varview)
      Functional Consequence:
      upstream_transcript_variant,intron_variant,2KB_upstream_variant
      Validated:
      by frequency,by alfa,by cluster
      MAF:
      ACACACACACA=0./0 (ALFA)
      AC=0.03821/70 (Korea1K)
      HGVS:
      3.

      rs1491479192 [Homo sapiens]
        Variant type:
        INS
        Alleles:
        ->CATATG,CATATGTG,CATG [Show Flanks]
        Chromosome:
        20:56393168 (GRCh38)
        20:54968225 (GRCh37)
        Canonical SPDI:
        NC_000020.11:56393168::CATATG,NC_000020.11:56393168::CATATGTG,NC_000020.11:56393168::CATG
        Gene:
        CSTF1 (Varview), AURKA (Varview)
        Functional Consequence:
        upstream_transcript_variant,intron_variant,2KB_upstream_variant
        Validated:
        by frequency,by alfa
        MAF:
        CATATGTG=0./0 (ALFA)
        CATG=0.00015/15 (GnomAD)
        HGVS:
        4.

        rs1491468568 has merged into rs869074687 [Homo sapiens]
          Variant type:
          DELINS
          Alleles:
          ->A,CATA [Show Flanks]
          Chromosome:
          20:56393167 (GRCh38)
          20:54968224 (GRCh37)
          Canonical SPDI:
          NC_000020.11:56393167:A:AA,NC_000020.11:56393167:A:ACATA
          Gene:
          CSTF1 (Varview), AURKA (Varview)
          Functional Consequence:
          2KB_upstream_variant,intron_variant,upstream_transcript_variant
          Validated:
          by frequency,by alfa
          MAF:
          ACATA=0./0 (ALFA)
          HGVS:
          5.

          rs1491453563 [Homo sapiens]
            Variant type:
            DELINS
            Alleles:
            TATA>-,TA [Show Flanks]
            Chromosome:
            20:56393147 (GRCh38)
            20:54968203 (GRCh37)
            Canonical SPDI:
            NC_000020.11:56393145:ATATA:A,NC_000020.11:56393145:ATATA:ATA
            Gene:
            CSTF1 (Varview), AURKA (Varview)
            Functional Consequence:
            upstream_transcript_variant,intron_variant,2KB_upstream_variant
            Validated:
            by frequency,by alfa
            MAF:
            ATA=0.000084/1 (ALFA)
            -=0.000039/4 (GnomAD)
            HGVS:
            6.

            rs1491399992 [Homo sapiens]
              Variant type:
              DELINS
              Alleles:
              AC>- [Show Flanks]
              Chromosome:
              20:56379715 (GRCh38)
              20:54954771 (GRCh37)
              Canonical SPDI:
              NC_000020.11:56379713:CAC:C
              Gene:
              AURKA (Varview)
              Functional Consequence:
              intron_variant
              Validated:
              by frequency
              MAF:
              -=0.000021/3 (GnomAD)
              HGVS:
              7.

              rs1491359702 has merged into rs776595023 [Homo sapiens]
                Variant type:
                DELINS
                Alleles:
                ->AT [Show Flanks]
                Chromosome:
                20:56374050 (GRCh38)
                20:54949107 (GRCh37)
                Canonical SPDI:
                NC_000020.11:56374050:AT:ATAT
                Gene:
                AURKA (Varview)
                Functional Consequence:
                intron_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                ATAT=0./0 (ALFA)
                AT=0.000007/1 (GnomAD)
                AT=0.000008/2 (TOPMED)
                AT=0.000809/3 (TWINSUK)
                AT=0.002335/9 (ALSPAC)
                HGVS:
                8.

                rs1491342882 [Homo sapiens]
                  Variant type:
                  INS
                  Alleles:
                  ->TGAGGCGG [Show Flanks]
                  Chromosome:
                  20:56379714 (GRCh38)
                  20:54954771 (GRCh37)
                  Canonical SPDI:
                  NC_000020.11:56379714::TGAGGCGG
                  Gene:
                  AURKA (Varview)
                  Functional Consequence:
                  intron_variant
                  Validated:
                  by frequency,by alfa
                  MAF:
                  TGAGGCGG=0./0 (ALFA)
                  HGVS:
                  9.

                  rs1491232512 [Homo sapiens]
                    Variant type:
                    DEL
                    Alleles:
                    TG>- [Show Flanks]
                    Chromosome:
                    20:56374352 (GRCh38)
                    20:54949408 (GRCh37)
                    Canonical SPDI:
                    NC_000020.11:56374351:TG:
                    Gene:
                    AURKA (Varview)
                    Functional Consequence:
                    intron_variant
                    Validated:
                    by frequency,by alfa
                    MAF:
                    -=0./0 (ALFA)
                    -=0.000008/2 (TOPMED)
                    HGVS:
                    10.

                    rs1491194814 [Homo sapiens]
                      Variant type:
                      INS
                      Alleles:
                      ->TATG [Show Flanks]
                      Chromosome:
                      20:56393132 (GRCh38)
                      20:54968189 (GRCh37)
                      Canonical SPDI:
                      NC_000020.11:56393132::TATG
                      Gene:
                      CSTF1 (Varview), AURKA (Varview)
                      Functional Consequence:
                      upstream_transcript_variant,intron_variant,2KB_upstream_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      TATG=0.000084/1 (ALFA)
                      TATG=0.000025/3 (GnomAD)
                      HGVS:
                      11.

                      rs1491117701 [Homo sapiens]
                        Variant type:
                        DELINS
                        Alleles:
                        AT>- [Show Flanks]
                        Chromosome:
                        20:56393170 (GRCh38)
                        20:54968226 (GRCh37)
                        Canonical SPDI:
                        NC_000020.11:56393167:ATAT:AT
                        Gene:
                        CSTF1 (Varview), AURKA (Varview)
                        Functional Consequence:
                        upstream_transcript_variant,intron_variant,2KB_upstream_variant
                        Validated:
                        by frequency,by alfa
                        MAF:
                        ATAT=0.00008/1 (ALFA)
                        -=0.00023/3 (GnomAD)
                        HGVS:
                        12.

                        rs1491083142 has merged into rs150366258 [Homo sapiens]
                          Variant type:
                          DELINS
                          Alleles:
                          TATA>-,TA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA [Show Flanks]
                          Chromosome:
                          20:56393129 (GRCh38)
                          20:54968185 (GRCh37)
                          Canonical SPDI:
                          NC_000020.11:56393117:ATATATATATATATA:ATATATATATA,NC_000020.11:56393117:ATATATATATATATA:ATATATATATATA,NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATA,NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATA,NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATA,NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATA,NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATA,NC_000020.11:56393117:ATATATATATATATA:ATATATATATATATATATATATATATA
                          Gene:
                          CSTF1 (Varview), AURKA (Varview)
                          Functional Consequence:
                          intron_variant,upstream_transcript_variant,2KB_upstream_variant
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          ATATATATATATA=0./0 (ALFA)
                          -=0.2055/1029 (1000Genomes)
                          HGVS:
                          13.

                          rs1491065900 has merged into rs112721980 [Homo sapiens]
                            Variant type:
                            DELINS
                            Alleles:
                            TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT [Show Flanks]
                            Chromosome:
                            20:56390322 (GRCh38)
                            20:54965378 (GRCh37)
                            Canonical SPDI:
                            NC_000020.11:56390309:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000020.11:56390309:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000020.11:56390309:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000020.11:56390309:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000020.11:56390309:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000020.11:56390309:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000020.11:56390309:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT
                            Gene:
                            AURKA (Varview)
                            Functional Consequence:
                            intron_variant
                            Validated:
                            by frequency,by alfa,by cluster
                            MAF:
                            TTTTTTTTTTTTT=0./0 (ALFA)
                            T=0.16494/826 (1000Genomes)
                            HGVS:
                            14.

                            rs1491047700 has merged into rs11473393 [Homo sapiens]
                              Variant type:
                              DELINS
                              Alleles:
                              GTGTGTGTGT>-,GTGTGT,GTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGT [Show Flanks]
                              Chromosome:
                              20:56393180 (GRCh38)
                              20:54968236 (GRCh37)
                              Canonical SPDI:
                              NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGT,NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGT,NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGT,NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGT,NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGT,NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000020.11:56393170:TGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGT
                              Gene:
                              CSTF1 (Varview), AURKA (Varview)
                              Functional Consequence:
                              intron_variant,upstream_transcript_variant,2KB_upstream_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              TGTGTGTGTGTGTGTGT=0./0 (ALFA)
                              TGTG=0.045601/12070 (TOPMED)
                              -=0.5/20 (GENOME_DK)
                              HGVS:
                              15.

                              rs1491004085 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                A>G,T [Show Flanks]
                                Chromosome:
                                20:56373500 (GRCh38)
                                20:54948556 (GRCh37)
                                Canonical SPDI:
                                NC_000020.11:56373499:A:G,NC_000020.11:56373499:A:T
                                Gene:
                                AURKA (Varview)
                                Functional Consequence:
                                synonymous_variant,coding_sequence_variant,missense_variant
                                Validated:
                                by frequency,by cluster
                                MAF:
                                G=0.000008/2 (GnomAD_exomes)
                                HGVS:
                                NC_000020.11:g.56373500A>G, NC_000020.11:g.56373500A>T, NC_000020.10:g.54948556A>G, NC_000020.10:g.54948556A>T, NG_012133.1:g.23796T>C, NG_012133.1:g.23796T>A, NM_003600.4:c.762T>C, NM_003600.4:c.762T>A, NM_003600.3:c.762T>C, NM_003600.3:c.762T>A, NM_003600.2:c.762T>C, NM_003600.2:c.762T>A, NM_198433.3:c.762T>C, NM_198433.3:c.762T>A, NM_198433.2:c.762T>C, NM_198433.2:c.762T>A, NM_198433.1:c.762T>C, NM_198433.1:c.762T>A, NM_198434.3:c.762T>C, NM_198434.3:c.762T>A, NM_198434.2:c.762T>C, NM_198434.2:c.762T>A, NM_198434.1:c.762T>C, NM_198434.1:c.762T>A, NM_198436.3:c.762T>C, NM_198436.3:c.762T>A, NM_198436.2:c.762T>C, NM_198436.2:c.762T>A, NM_198436.1:c.762T>C, NM_198436.1:c.762T>A, NM_198435.3:c.762T>C, NM_198435.3:c.762T>A, NM_198435.2:c.762T>C, NM_198435.2:c.762T>A, NM_198435.1:c.762T>C, NM_198435.1:c.762T>A, NM_198437.3:c.762T>C, NM_198437.3:c.762T>A, NM_198437.2:c.762T>C, NM_198437.2:c.762T>A, NM_198437.1:c.762T>C, NM_198437.1:c.762T>A, NM_001323303.2:c.762T>C, NM_001323303.2:c.762T>A, NM_001323303.1:c.762T>C, NM_001323303.1:c.762T>A, NM_001323305.2:c.762T>C, NM_001323305.2:c.762T>A, NM_001323305.1:c.762T>C, NM_001323305.1:c.762T>A, NM_001323304.2:c.762T>C, NM_001323304.2:c.762T>A, NM_001323304.1:c.762T>C, NM_001323304.1:c.762T>A, XM_017028034.3:c.864T>C, XM_017028034.3:c.864T>A, XM_017028034.2:c.864T>C, XM_017028034.2:c.864T>A, XM_017028034.1:c.864T>C, XM_017028034.1:c.864T>A, XM_017028035.2:c.762T>C, XM_017028035.2:c.762T>A, XM_017028035.1:c.762T>C, XM_017028035.1:c.762T>A, XM_047440428.1:c.864T>C, XM_047440428.1:c.864T>A, XM_047440427.1:c.864T>C, XM_047440427.1:c.864T>A, NM_003158.1:c.759T>C, NM_003158.1:c.759T>A, NP_003591.2:p.His254Gln, NP_940835.1:p.His254Gln, NP_940836.1:p.His254Gln, NP_940838.1:p.His254Gln, NP_940837.1:p.His254Gln, NP_940839.1:p.His254Gln, NP_001310232.1:p.His254Gln, NP_001310234.1:p.His254Gln, NP_001310233.1:p.His254Gln, XP_016883523.1:p.His288Gln, XP_016883524.1:p.His254Gln, XP_047296384.1:p.His288Gln, XP_047296383.1:p.His288Gln
                                16.

                                rs1490816529 [Homo sapiens]
                                  Variant type:
                                  SNV
                                  Alleles:
                                  G>A,C [Show Flanks]
                                  Chromosome:
                                  20:56390007 (GRCh38)
                                  20:54965063 (GRCh37)
                                  Canonical SPDI:
                                  NC_000020.11:56390006:G:A,NC_000020.11:56390006:G:C
                                  Gene:
                                  AURKA (Varview)
                                  Functional Consequence:
                                  intron_variant
                                  Validated:
                                  by frequency,by alfa,by cluster
                                  MAF:
                                  C=0./0 (ALFA)
                                  C=0.000004/1 (TOPMED)
                                  A=0.000007/1 (GnomAD)
                                  HGVS:
                                  17.

                                  rs1490796178 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    C>A,G [Show Flanks]
                                    Chromosome:
                                    20:56389592 (GRCh38)
                                    20:54964648 (GRCh37)
                                    Canonical SPDI:
                                    NC_000020.11:56389591:C:A,NC_000020.11:56389591:C:G
                                    Gene:
                                    AURKA (Varview)
                                    Functional Consequence:
                                    intron_variant
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    G=0./0 (ALFA)
                                    A=0.000007/1 (GnomAD)
                                    HGVS:
                                    18.

                                    rs1490586228 [Homo sapiens]
                                      Variant type:
                                      SNV
                                      Alleles:
                                      C>T [Show Flanks]
                                      Chromosome:
                                      20:56380980 (GRCh38)
                                      20:54956036 (GRCh37)
                                      Canonical SPDI:
                                      NC_000020.11:56380979:C:T
                                      Gene:
                                      AURKA (Varview)
                                      Functional Consequence:
                                      intron_variant
                                      Validated:
                                      by frequency,by alfa,by cluster
                                      MAF:
                                      T=0./0 (ALFA)
                                      T=0.000007/1 (GnomAD)
                                      T=0.000008/2 (TOPMED)
                                      HGVS:
                                      19.

                                      rs1490349239 [Homo sapiens]
                                        Variant type:
                                        SNV
                                        Alleles:
                                        C>A [Show Flanks]
                                        Chromosome:
                                        20:56368176 (GRCh38)
                                        20:54943232 (GRCh37)
                                        Canonical SPDI:
                                        NC_000020.11:56368175:C:A
                                        Gene:
                                        FAM210B (Varview)
                                        Functional Consequence:
                                        3_prime_UTR_variant
                                        Validated:
                                        by frequency,by alfa,by cluster
                                        MAF:
                                        A=0.000142/2 (ALFA)
                                        A=0.000029/4 (GnomAD)
                                        A=0.000045/12 (TOPMED)
                                        HGVS:

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