SNP Links for Nucleotide (Select 951235811) - SNP

Links from Nucleotide

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Select item 14915718541.

rs1491571854 [Homo sapiens]

Variant type:: INS
Alleles:: ->AC,ATA,ATAC,ATATAC [Show Flanks]
Chromosome:: 7:155073876 (GRCh38)
7:154865587 (GRCh37)
Canonical SPDI:: NC_000007.14:155073876::AC,NC_000007.14:155073876::ATA,NC_000007.14:155073876::ATAC,NC_000007.14:155073876::ATATAC
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATA=0./0 (ALFA)
HGVS:: NC_000007.14:g.155073876_155073877insAC, NC_000007.14:g.155073876_155073877insATA, NC_000007.14:g.155073876_155073877insATAC, NC_000007.14:g.155073876_155073877insATATAC, NC_000007.13:g.154865586_154865587insAC, NC_000007.13:g.154865586_154865587insATA, NC_000007.13:g.154865586_154865587insATAC, NC_000007.13:g.154865586_154865587insATATAC, NG_044997.1:g.8553_8554insAC, NG_044997.1:g.8553_8554insATA, NG_044997.1:g.8553_8554insATAC, NG_044997.1:g.8553_8554insATATAC

Select item 14914050402.

rs1491405040 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT,GTGTGT,GTGTGTGT [Show Flanks]
Chromosome:: 7:155073877 (GRCh38)
7:154865587 (GRCh37)
Canonical SPDI:: NC_000007.14:155073875:TGT:T,NC_000007.14:155073875:TGT:TGTGT,NC_000007.14:155073875:TGT:TGTGTGT,NC_000007.14:155073875:TGT:TGTGTGTGT
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGT=0./0 (ALFA)
HGVS:: NC_000007.14:g.155073877_155073878del, NC_000007.14:g.155073877_155073878dup, NC_000007.14:g.155073877GT[3], NC_000007.14:g.155073877GT[4], NC_000007.13:g.154865587_154865588del, NC_000007.13:g.154865587_154865588dup, NC_000007.13:g.154865587GT[3], NC_000007.13:g.154865587GT[4], NG_044997.1:g.8554_8555del, NG_044997.1:g.8554_8555dup, NG_044997.1:g.8554GT[3], NG_044997.1:g.8554GT[4]

Select item 14911541873.

rs1491154187 has merged into rs1436625736 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT,GTGTGT,GTGTGTGT [Show Flanks]
Chromosome:: 7:155073889 (GRCh38)
7:154865599 (GRCh37)
Canonical SPDI:: NC_000007.14:155073887:TGT:T,NC_000007.14:155073887:TGT:TGTGT,NC_000007.14:155073887:TGT:TGTGTGT,NC_000007.14:155073887:TGT:TGTGTGTGT
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGT=0./0 (ALFA)
TGTG=0.00036/6 (TOMMO)
TGTGTG=0.00056/1 (Korea1K)
HGVS:: NC_000007.14:g.155073889_155073890del, NC_000007.14:g.155073889_155073890dup, NC_000007.14:g.155073889GT[3], NC_000007.14:g.155073889GT[4], NC_000007.13:g.154865599_154865600del, NC_000007.13:g.154865599_154865600dup, NC_000007.13:g.154865599GT[3], NC_000007.13:g.154865599GT[4], NG_044997.1:g.8566_8567del, NG_044997.1:g.8566_8567dup, NG_044997.1:g.8566GT[3], NG_044997.1:g.8566GT[4]

Select item 14910651764.

rs1491065176 has merged into rs60282843 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA,CACACA,CACACACA,CACACACACA [Show Flanks]
Chromosome:: 7:155073840 (GRCh38)
7:154865550 (GRCh37)
Canonical SPDI:: NC_000007.14:155073830:ACACACACACA:ACACACACA,NC_000007.14:155073830:ACACACACACA:ACACACACACACA,NC_000007.14:155073830:ACACACACACA:ACACACACACACACA,NC_000007.14:155073830:ACACACACACA:ACACACACACACACACA,NC_000007.14:155073830:ACACACACACA:ACACACACACACACACACA
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACA=0./0 (ALFA)
-=0./0 (GENOME_DK)
-=0.103/516 (1000Genomes)
HGVS:: NC_000007.14:g.155073832CA[4], NC_000007.14:g.155073832CA[6], NC_000007.14:g.155073832CA[7], NC_000007.14:g.155073832CA[8], NC_000007.14:g.155073832CA[9], NC_000007.13:g.154865542CA[4], NC_000007.13:g.154865542CA[6], NC_000007.13:g.154865542CA[7], NC_000007.13:g.154865542CA[8], NC_000007.13:g.154865542CA[9], NG_044997.1:g.8509CA[4], NG_044997.1:g.8509CA[6], NG_044997.1:g.8509CA[7], NG_044997.1:g.8509CA[8], NG_044997.1:g.8509CA[9]

Select item 14910045145.

rs1491004514 has merged into rs151333626 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATATATATAT>-,AT,ATAT,ATATAT,ATATATAT,ATATATATATAT,ATATATATATATAT [Show Flanks]
Chromosome:: 7:155073867 (GRCh38)
7:154865577 (GRCh37)
Canonical SPDI:: NC_000007.14:155073865:TATATATATAT:T,NC_000007.14:155073865:TATATATATAT:TAT,NC_000007.14:155073865:TATATATATAT:TATAT,NC_000007.14:155073865:TATATATATAT:TATATAT,NC_000007.14:155073865:TATATATATAT:TATATATAT,NC_000007.14:155073865:TATATATATAT:TATATATATATAT,NC_000007.14:155073865:TATATATATAT:TATATATATATATAT
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAT=0./0 (ALFA)
-=0.31607/1172 (TWINSUK)
-=0.3259/1256 (ALSPAC)
HGVS:: NC_000007.14:g.155073867_155073876del, NC_000007.14:g.155073867AT[1], NC_000007.14:g.155073867AT[2], NC_000007.14:g.155073867AT[3], NC_000007.14:g.155073867AT[4], NC_000007.14:g.155073867AT[6], NC_000007.14:g.155073867AT[7], NC_000007.13:g.154865577_154865586del, NC_000007.13:g.154865577AT[1], NC_000007.13:g.154865577AT[2], NC_000007.13:g.154865577AT[3], NC_000007.13:g.154865577AT[4], NC_000007.13:g.154865577AT[6], NC_000007.13:g.154865577AT[7], NG_044997.1:g.8544_8553del, NG_044997.1:g.8544AT[1], NG_044997.1:g.8544AT[2], NG_044997.1:g.8544AT[3], NG_044997.1:g.8544AT[4], NG_044997.1:g.8544AT[6], NG_044997.1:g.8544AT[7]

Select item 14909397496.

rs1490939749 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:155081348 (GRCh38)
7:154873058 (GRCh37)
Canonical SPDI:: NC_000007.14:155081347:T:C
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.155081348T>C, NC_000007.13:g.154873058T>C, NG_044997.1:g.16025T>C

Select item 14907737767.

rs1490773776 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:155073669 (GRCh38)
7:154865379 (GRCh37)
Canonical SPDI:: NC_000007.14:155073668:A:G
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.155073669A>G, NC_000007.13:g.154865379A>G, NG_044997.1:g.8346A>G

Select item 14907205118.

rs1490720511 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:155088668 (GRCh38)
7:154880378 (GRCh37)
Canonical SPDI:: NC_000007.14:155088667:G:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.155088668G>A, NC_000007.13:g.154880378G>A, NG_044997.1:g.23345G>A

Select item 14907103749.

rs1490710374 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:155087776 (GRCh38)
7:154879486 (GRCh37)
Canonical SPDI:: NC_000007.14:155087775:C:T
Gene:: HTR5A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.155087776C>T, NC_000007.13:g.154879486C>T, NG_044997.1:g.22453C>T

Select item 149054107710.

rs1490541077 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:155086399 (GRCh38)
7:154878109 (GRCh37)
Canonical SPDI:: NC_000007.14:155086398:G:A
Gene:: HTR5A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000007.14:g.155086399G>A, NC_000007.13:g.154878109G>A, NG_044997.1:g.21076G>A, NM_024012.4:c.*1912G>A, NM_024012.3:c.*1912G>A

Select item 149050593711.

rs1490505937 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:155082768 (GRCh38)
7:154874478 (GRCh37)
Canonical SPDI:: NC_000007.14:155082767:C:G,NC_000007.14:155082767:C:T
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.155082768C>G, NC_000007.14:g.155082768C>T, NC_000007.13:g.154874478C>G, NC_000007.13:g.154874478C>T, NG_044997.1:g.17445C>G, NG_044997.1:g.17445C>T

Select item 149044927212.

rs1490449272 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:155081846 (GRCh38)
7:154873556 (GRCh37)
Canonical SPDI:: NC_000007.14:155081845:A:T
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.00003/8 (TOPMED)
T=0.000248/4 (TOMMO)
T=0.001027/3 (KOREAN)
T=0.001638/3 (Korea1K)
T=0.004717/1 (Vietnamese)
HGVS:: NC_000007.14:g.155081846A>T, NC_000007.13:g.154873556A>T, NG_044997.1:g.16523A>T

Select item 149025675913.

rs1490256759 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TG [Show Flanks]
Chromosome:: 7:155075777 (GRCh38)
7:154867488 (GRCh37)
Canonical SPDI:: NC_000007.14:155075777:TGTG:TGTGTG
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGTGTG=0./0 (ALFA)
TG=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.155075778TG[3], NC_000007.13:g.154867488TG[3], NG_044997.1:g.10455TG[3]

Select item 149023168314.

rs1490231683 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTT>- [Show Flanks]
Chromosome:: 7:155089080 (GRCh38)
7:154880790 (GRCh37)
Canonical SPDI:: NC_000007.14:155089073:TTCTTTCTTT:TTCTTT
Validated:: by frequency,by alfa,by cluster
MAF:: TTCTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.155089076CTTT[1], NC_000007.13:g.154880786CTTT[1], NG_044997.1:g.23753CTTT[1]

Select item 149009840615.

rs1490098406 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:155085580 (GRCh38)
7:154877290 (GRCh37)
Canonical SPDI:: NC_000007.14:155085579:A:G
Gene:: HTR5A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.155085580A>G, NC_000007.13:g.154877290A>G, NG_044997.1:g.20257A>G, NM_024012.4:c.*1093A>G, NM_024012.3:c.*1093A>G

Select item 149002014216.

rs1490020142 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:155083279 (GRCh38)
7:154874989 (GRCh37)
Canonical SPDI:: NC_000007.14:155083278:A:G
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.155083279A>G, NC_000007.13:g.154874989A>G, NG_044997.1:g.17956A>G

Select item 148994492617.

rs1489944926 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:155082242 (GRCh38)
7:154873952 (GRCh37)
Canonical SPDI:: NC_000007.14:155082241:T:C
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.155082242T>C, NC_000007.13:g.154873952T>C, NG_044997.1:g.16919T>C

Select item 148984885618.

rs1489848856 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:155070162 (GRCh38)
7:154861872 (GRCh37)
Canonical SPDI:: NC_000007.14:155070161:C:A,NC_000007.14:155070161:C:T
Gene:: HTR5A (Varview), HTR5A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.155070162C>A, NC_000007.14:g.155070162C>T, NC_000007.13:g.154861872C>A, NC_000007.13:g.154861872C>T, NG_044997.1:g.4839C>A, NG_044997.1:g.4839C>T

Select item 148973576619.

rs1489735766 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:155076145 (GRCh38)
7:154867855 (GRCh37)
Canonical SPDI:: NC_000007.14:155076144:A:G
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.155076145A>G, NC_000007.13:g.154867855A>G, NG_044997.1:g.10822A>G

Select item 148948316720.

rs1489483167 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 7:155077600 (GRCh38)
7:154869310 (GRCh37)
Canonical SPDI:: NC_000007.14:155077599:A:C,NC_000007.14:155077599:A:T
Gene:: HTR5A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.155077600A>C, NC_000007.14:g.155077600A>T, NC_000007.13:g.154869310A>C, NC_000007.13:g.154869310A>T, NG_044997.1:g.12277A>C, NG_044997.1:g.12277A>T

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